Wall clock time and date at job start Tue Mar 31 2020 01:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47059 * 2 1 4 4 H 1.08999 * 109.46670 * 57.04540 * 3 2 1 5 5 C 1.52996 * 109.46850 * 177.04428 * 3 2 1 6 6 O 1.42901 * 109.47496 * 55.00288 * 5 3 2 7 7 C 1.42901 * 113.99978 * 180.02562 * 6 5 3 8 8 O 1.42899 * 109.47083 * 297.04365 * 3 2 1 9 9 C 1.35744 * 116.99670 * 156.11667 * 8 3 2 10 10 C 1.41196 * 120.28345 * 276.84006 * 9 8 3 11 11 C 1.41185 * 120.26551 * 0.02562 * 10 9 8 12 12 H 1.07999 * 119.99756 * 327.15221 * 11 10 9 13 13 C 1.39922 * 120.00097 * 147.16189 * 11 10 9 14 14 N 1.30871 * 120.00067 * 348.93851 * 13 11 10 15 15 Si 1.86803 * 119.99898 * 168.94342 * 13 11 10 16 16 H 1.48501 * 109.47026 * 59.99883 * 15 13 11 17 17 H 1.48500 * 109.46661 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.46928 * 299.99657 * 15 13 11 19 19 C 1.40772 * 119.46935 * 179.75268 * 10 9 8 20 20 C 1.36490 * 120.02230 * 0.54801 * 19 10 9 21 21 C 1.38771 * 120.58183 * 359.69977 * 20 19 10 22 22 C 1.38712 * 120.53590 * 0.02562 * 21 20 19 23 23 O 1.36000 * 120.01950 * 180.02562 * 22 21 20 24 24 C 1.42907 * 117.00405 * 359.97438 * 23 22 21 25 25 H 1.09006 * 109.46991 * 65.88555 * 1 2 3 26 26 H 1.08997 * 109.47112 * 185.88084 * 1 2 3 27 27 H 1.08991 * 109.47251 * 305.88189 * 1 2 3 28 28 H 1.09003 * 109.46620 * 240.00635 * 2 1 3 29 29 H 1.08999 * 109.46887 * 120.00280 * 2 1 3 30 30 H 1.09000 * 109.47410 * 294.99991 * 5 3 2 31 31 H 1.09007 * 109.46859 * 175.00676 * 5 3 2 32 32 H 1.08996 * 109.46660 * 299.99629 * 7 6 5 33 33 H 1.09000 * 109.47199 * 59.99743 * 7 6 5 34 34 H 1.09003 * 109.46873 * 180.02562 * 7 6 5 35 35 H 0.96992 * 120.00338 * 180.02562 * 14 13 11 36 36 H 1.08004 * 119.98620 * 180.24609 * 19 10 9 37 37 H 1.07999 * 119.70729 * 179.72571 * 20 19 10 38 38 H 1.07999 * 119.72976 * 180.02562 * 21 20 19 39 39 H 1.08997 * 109.47415 * 180.02562 * 24 23 22 40 40 H 1.08999 * 109.46691 * 300.00069 * 24 23 22 41 41 H 1.09001 * 109.46929 * 59.99932 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6340 1.9713 0.8623 5 6 3.5682 1.4431 0.0744 6 8 4.0973 0.6517 -0.9914 7 6 5.5246 0.5856 -1.0129 8 8 1.6213 2.0958 -1.2000 9 6 1.5350 3.4501 -1.1664 10 6 0.3793 4.0774 -0.6523 11 6 -0.6962 3.3012 -0.1684 12 1 -0.9191 2.3461 -0.6206 13 6 -1.4733 3.7694 0.8968 14 7 -1.0811 4.8116 1.5843 15 14 -3.0704 2.9067 1.3376 16 1 -2.7875 1.4932 1.6941 17 1 -3.7000 3.5921 2.4948 18 1 -3.9930 2.9489 0.1748 19 6 0.3103 5.4831 -0.6209 20 6 1.3505 6.2287 -1.0951 21 6 2.4850 5.6137 -1.6055 22 6 2.5805 4.2304 -1.6427 23 8 3.6974 3.6387 -2.1447 24 6 4.7330 4.5028 -2.6169 25 1 -0.3633 0.4199 -0.9380 26 1 -0.3633 -1.0222 0.1053 27 1 -0.3633 0.6023 0.8326 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 3.8857 1.0250 1.0296 31 1 3.9359 2.4654 -0.0149 32 1 5.9332 1.5899 -1.1245 33 1 5.8823 0.1494 -0.0801 34 1 5.8471 -0.0327 -1.8507 35 1 -1.6196 5.1360 2.3229 36 1 -0.5682 5.9717 -0.2257 37 1 1.2903 7.3068 -1.0726 38 1 3.3001 6.2171 -1.9768 39 1 5.5639 3.9041 -2.9900 40 1 4.3458 5.1279 -3.4215 41 1 5.0790 5.1357 -1.7996 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225842762.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:19 Heat of formation + Delta-G solvation = -125.750111 kcal Electronic energy + Delta-G solvation = -23513.188760 eV Core-core repulsion = 20165.087344 eV Total energy + Delta-G solvation = -3348.101416 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.91239 -39.34331 -38.32898 -37.34123 -35.27224 -34.37489 -31.32330 -30.32096 -29.86564 -27.96687 -27.00180 -26.81945 -24.50340 -22.67052 -22.59563 -21.46363 -19.59843 -18.47893 -17.64236 -17.24795 -16.99193 -16.72165 -16.55869 -16.17098 -16.02752 -15.53237 -15.16732 -15.00050 -14.64389 -14.37329 -13.90094 -13.69557 -13.46800 -13.20050 -13.00602 -12.82207 -12.67029 -12.56613 -12.42919 -12.21157 -12.09812 -11.99180 -11.77076 -11.58097 -11.46005 -11.19201 -11.00994 -10.47360 -10.26589 -9.19433 -8.71283 -8.52115 -6.34012 0.83884 1.08162 1.39078 1.48826 1.51844 2.21446 2.67325 2.77332 2.95859 3.24890 3.77469 3.98652 4.14241 4.33019 4.37416 4.39716 4.45948 4.50213 4.52640 4.57848 4.65759 4.68611 4.70246 4.80259 4.86931 4.93567 5.02554 5.08452 5.12732 5.17921 5.28493 5.35826 5.46863 5.59250 5.79187 5.94462 6.10170 6.14293 6.35540 6.55978 6.73028 6.86221 6.96240 7.43628 8.36389 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.015488 B = 0.008090 C = 0.005652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.391664 B = 3460.435524 C = 4952.635178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 C 0.092 3.908 4 H 0.047 0.953 5 C 0.055 3.945 6 O -0.391 6.391 7 C 0.029 3.971 8 O -0.308 6.308 9 C -0.073 4.073 10 C 0.097 3.903 11 C -0.467 4.467 12 H 0.084 0.916 13 C 0.041 3.959 14 N -0.826 5.826 15 Si 0.965 3.035 16 H -0.254 1.254 17 H -0.269 1.269 18 H -0.262 1.262 19 C -0.195 4.195 20 C -0.082 4.082 21 C -0.310 4.310 22 C 0.127 3.873 23 O -0.324 6.324 24 C 0.024 3.976 25 H 0.041 0.959 26 H 0.069 0.931 27 H 0.042 0.958 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.033 0.967 32 H 0.035 0.965 33 H 0.050 0.950 34 H 0.096 0.904 35 H 0.287 0.713 36 H 0.102 0.898 37 H 0.118 0.882 38 H 0.128 0.872 39 H 0.113 0.887 40 H 0.053 0.947 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.890 -4.603 -0.618 9.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.137 4.137 3 C 0.036 3.964 4 H 0.065 0.935 5 C -0.022 4.022 6 O -0.310 6.310 7 C -0.068 4.068 8 O -0.225 6.225 9 C -0.118 4.118 10 C 0.094 3.906 11 C -0.497 4.497 12 H 0.102 0.898 13 C -0.174 4.174 14 N -0.452 5.452 15 Si 0.787 3.213 16 H -0.178 1.178 17 H -0.193 1.193 18 H -0.186 1.186 19 C -0.214 4.214 20 C -0.100 4.100 21 C -0.330 4.330 22 C 0.082 3.918 23 O -0.238 6.238 24 C -0.071 4.071 25 H 0.061 0.939 26 H 0.088 0.912 27 H 0.061 0.939 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.115 0.885 35 H 0.098 0.902 36 H 0.120 0.880 37 H 0.136 0.864 38 H 0.146 0.854 39 H 0.131 0.869 40 H 0.072 0.928 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.727 -4.871 -0.715 9.162 hybrid contribution -0.342 0.739 0.674 1.057 sum 7.385 -4.132 -0.040 8.462 Atomic orbital electron populations 1.21716 0.95650 1.01163 1.01371 1.21380 0.96127 0.93354 1.02796 1.22378 0.91169 0.94545 0.88353 0.93513 1.22953 0.95039 0.94243 0.89961 1.87909 1.21357 1.70581 1.51113 1.22846 0.80583 1.00936 1.02387 1.86057 1.86802 1.15657 1.33937 1.18248 0.93620 0.82974 1.16993 1.18024 0.91117 0.92776 0.88690 1.19658 1.10494 1.05288 1.14215 0.89798 1.26616 1.01029 0.94931 0.94791 1.69866 1.37530 1.22012 1.15787 0.85487 0.77551 0.79721 0.78588 1.17789 1.19301 1.18623 1.20866 0.99861 0.93770 1.06950 1.20529 0.93398 0.98942 0.97170 1.20672 1.02445 0.92146 1.17735 1.19274 0.85649 0.91637 0.95248 1.86153 1.25572 1.36129 1.75983 1.23129 0.89546 0.95600 0.98818 0.93937 0.91170 0.93920 0.91258 0.89430 0.91790 0.94889 0.94594 0.93184 0.88521 0.90229 0.87982 0.86449 0.85417 0.86884 0.92821 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.12 8.92 71.98 0.64 -4.48 16 2 C -0.10 -3.51 5.41 30.60 0.17 -3.35 16 3 C 0.09 3.87 2.37 30.59 0.07 3.95 16 4 H 0.05 2.19 7.86 -2.39 -0.02 2.18 16 5 C 0.06 2.04 5.50 71.98 0.40 2.43 16 6 O -0.39 -13.89 9.85 -144.34 -1.42 -15.31 16 7 C 0.03 0.73 11.01 113.37 1.25 1.98 16 8 O -0.31 -15.25 8.47 -70.61 -0.60 -15.85 16 9 C -0.07 -3.77 5.50 23.15 0.13 -3.64 16 10 C 0.10 5.27 5.50 -21.21 -0.12 5.15 16 11 C -0.47 -24.77 8.32 23.40 0.19 -24.58 16 12 H 0.08 4.42 5.72 -2.91 -0.02 4.40 16 13 C 0.04 2.04 5.22 85.24 0.45 2.48 16 14 N -0.83 -42.32 11.13 21.82 0.24 -42.08 16 15 Si 0.97 37.95 29.57 68.60 2.03 39.98 16 16 H -0.25 -9.58 7.11 99.48 0.71 -8.88 16 17 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16 18 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 19 C -0.19 -10.19 8.58 22.48 0.19 -10.00 16 20 C -0.08 -3.77 9.96 21.99 0.22 -3.55 16 21 C -0.31 -13.59 9.05 22.51 0.20 -13.39 16 22 C 0.13 5.99 6.28 22.54 0.14 6.14 16 23 O -0.32 -13.46 9.07 -79.65 -0.72 -14.19 16 24 C 0.02 0.70 9.81 113.37 1.11 1.81 16 25 H 0.04 1.71 6.90 -2.38 -0.02 1.69 16 26 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.04 1.65 8.07 -2.39 -0.02 1.63 16 28 H 0.07 2.48 7.66 -2.39 -0.02 2.46 16 29 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.03 1.34 6.60 -2.38 -0.02 1.33 16 32 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.29 13.42 8.30 -92.71 -0.77 12.65 16 36 H 0.10 5.52 6.53 -2.91 -0.02 5.50 16 37 H 0.12 4.65 8.06 -2.91 -0.02 4.62 16 38 H 0.13 4.69 6.27 -2.91 -0.02 4.67 16 39 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.05 1.48 7.66 -2.39 -0.02 1.47 16 41 H 0.05 1.44 7.66 -2.39 -0.02 1.42 16 Total: -1.00 -62.55 335.11 5.59 -56.96 By element: Atomic # 1 Polarization: 28.50 SS G_CDS: 1.01 Total: 29.51 kcal Atomic # 6 Polarization: -44.07 SS G_CDS: 5.04 Total: -39.03 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.24 Total: -42.08 kcal Atomic # 8 Polarization: -42.60 SS G_CDS: -2.74 Total: -45.34 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 2.03 Total: 39.98 kcal Total: -62.55 5.59 -56.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225842762.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.789 kcal (2) G-P(sol) polarization free energy of solvation -62.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds