Wall clock time and date at job start Tue Mar 31 2020 01:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36001 * 116.99968 * 2 1 4 4 C 1.38707 * 120.02572 * 359.97155 * 3 2 1 5 5 C 1.38772 * 120.53952 * 180.02562 * 4 3 2 6 6 C 1.36494 * 120.58191 * 0.04716 * 5 4 3 7 7 C 1.40766 * 120.02047 * 359.95428 * 6 5 4 8 8 C 1.41180 * 120.26605 * 180.02562 * 7 6 5 9 9 H 1.07998 * 120.00391 * 204.77028 * 8 7 6 10 10 C 1.39927 * 119.99743 * 24.76356 * 8 7 6 11 11 N 1.30874 * 119.99812 * 17.68705 * 10 8 7 12 12 Si 1.86794 * 119.99944 * 197.68617 * 10 8 7 13 13 H 1.48505 * 109.47299 * 59.99887 * 12 10 8 14 14 H 1.48498 * 109.47357 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47416 * 300.00151 * 12 10 8 16 16 C 1.38886 * 120.02026 * 179.97438 * 3 2 1 17 17 O 1.35741 * 120.28249 * 0.25133 * 16 3 2 18 18 C 1.42899 * 117.00148 * 269.72244 * 17 16 3 19 19 C 1.52997 * 109.47029 * 179.97438 * 18 17 16 20 20 C 1.53001 * 109.46888 * 179.97438 * 19 18 17 21 21 H 1.08996 * 109.47157 * 305.00098 * 20 19 18 22 22 C 1.53006 * 109.46705 * 185.00379 * 20 19 18 23 23 O 1.42899 * 109.47119 * 65.00631 * 20 19 18 24 24 C 1.42904 * 113.99796 * 210.00020 * 23 20 19 25 25 H 1.09002 * 109.47200 * 300.00482 * 1 2 3 26 26 H 1.09000 * 109.46778 * 60.00383 * 1 2 3 27 27 H 1.09001 * 109.47633 * 180.02562 * 1 2 3 28 28 H 1.08003 * 119.73065 * 0.05134 * 4 3 2 29 29 H 1.07999 * 119.71160 * 180.02562 * 5 4 3 30 30 H 1.08002 * 119.98695 * 179.97438 * 6 5 4 31 31 H 0.96998 * 119.99655 * 180.02562 * 11 10 8 32 32 H 1.08994 * 109.46955 * 299.99876 * 18 17 16 33 33 H 1.08997 * 109.46974 * 60.00091 * 18 17 16 34 34 H 1.08999 * 109.47154 * 300.00287 * 19 18 17 35 35 H 1.09001 * 109.46943 * 59.99781 * 19 18 17 36 36 H 1.09008 * 109.46744 * 180.02562 * 22 20 19 37 37 H 1.08996 * 109.47083 * 299.99764 * 22 20 19 38 38 H 1.08989 * 109.47464 * 60.00087 * 22 20 19 39 39 H 1.09000 * 109.46692 * 179.97438 * 24 23 20 40 40 H 1.09004 * 109.46901 * 299.99299 * 24 23 20 41 41 H 1.08997 * 109.47084 * 59.99779 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2915 2.3754 -0.0006 5 6 1.9104 3.6175 -0.0011 6 6 3.2718 3.7150 -0.0021 7 6 4.0614 2.5496 -0.0015 8 6 5.4700 2.6444 -0.0019 9 1 6.0658 1.8331 -0.3934 10 6 6.0942 3.7896 0.5048 11 7 5.4299 4.6079 1.2807 12 14 7.8756 4.1504 0.0739 13 1 8.0103 4.2901 -1.3984 14 1 8.2979 5.4133 0.7311 15 1 8.7348 3.0349 0.5459 16 6 3.4334 1.2850 0.0005 17 8 4.1787 0.1505 -0.0041 18 6 4.5399 -0.3937 1.2669 19 6 5.3714 -1.6614 1.0612 20 6 5.7586 -2.2437 2.4221 21 1 6.2672 -1.4812 3.0121 22 6 6.6926 -3.4383 2.2185 23 8 4.5811 -2.6714 3.1097 24 6 4.6776 -2.5903 4.5332 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 0.2132 2.3143 -0.0002 29 1 1.3096 4.5149 -0.0012 30 1 3.7434 4.6866 -0.0029 31 1 5.8626 5.4020 1.6316 32 1 5.1250 0.3389 1.8227 33 1 3.6374 -0.6384 1.8270 34 1 4.7858 -2.3938 0.5055 35 1 6.2738 -1.4170 0.5009 36 1 6.9681 -3.8534 3.1881 37 1 6.1840 -4.2007 1.6285 38 1 7.5907 -3.1122 1.6941 39 1 3.7442 -2.9319 4.9805 40 1 5.4980 -3.2197 4.8782 41 1 4.8640 -1.5572 4.8264 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225843202.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:10 Heat of formation + Delta-G solvation = -114.937865 kcal Electronic energy + Delta-G solvation = -22446.804438 eV Core-core repulsion = 19099.171876 eV Total energy + Delta-G solvation = -3347.632562 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.03217 -38.28147 -36.94830 -35.70245 -33.47324 -32.90837 -29.66018 -29.04812 -28.02979 -26.54177 -26.38934 -25.04860 -22.81870 -20.81691 -20.72585 -20.52108 -17.84656 -16.72578 -16.40557 -15.76745 -15.53282 -15.13038 -14.95872 -14.80099 -14.73810 -14.05254 -13.76169 -13.40784 -13.08697 -12.79210 -12.69964 -12.46439 -12.07018 -11.94687 -11.50771 -11.42186 -11.30758 -11.14662 -11.03575 -10.70584 -10.62443 -10.52461 -10.39519 -10.11957 -9.91711 -9.59866 -9.43429 -9.17794 -8.47713 -7.43070 -6.92893 -6.74838 -4.42567 2.65911 2.92278 3.02558 3.05869 3.19287 3.86394 3.92850 4.28431 4.49519 4.71608 5.13228 5.22441 5.36770 5.45456 5.48088 5.66973 5.68560 5.68881 5.73424 5.76720 5.86299 5.92068 5.93760 6.09459 6.20536 6.28723 6.32346 6.50765 6.67152 6.73839 6.85434 6.95632 7.12665 7.22669 7.37361 7.64401 7.75882 7.93176 8.04259 8.41350 8.45710 8.72786 8.80480 9.24666 10.07271 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.010712 B = 0.007172 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.284172 B = 3903.221279 C = 5898.879144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.320 6.320 3 C 0.134 3.866 4 C -0.319 4.319 5 C -0.077 4.077 6 C -0.181 4.181 7 C 0.126 3.874 8 C -0.439 4.439 9 H 0.086 0.914 10 C 0.075 3.925 11 N -0.785 5.785 12 Si 0.911 3.089 13 H -0.261 1.261 14 H -0.278 1.278 15 H -0.264 1.264 16 C -0.059 4.059 17 O -0.313 6.313 18 C 0.068 3.932 19 C -0.111 4.111 20 C 0.087 3.913 21 H 0.062 0.938 22 C -0.171 4.171 23 O -0.382 6.382 24 C 0.031 3.969 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.122 0.878 31 H 0.283 0.717 32 H 0.043 0.957 33 H 0.042 0.958 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.036 0.964 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.194 -7.908 3.633 8.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.234 6.234 3 C 0.090 3.910 4 C -0.339 4.339 5 C -0.096 4.096 6 C -0.200 4.200 7 C 0.122 3.878 8 C -0.467 4.467 9 H 0.105 0.895 10 C -0.144 4.144 11 N -0.410 5.410 12 Si 0.735 3.265 13 H -0.186 1.186 14 H -0.203 1.203 15 H -0.188 1.188 16 C -0.105 4.105 17 O -0.229 6.229 18 C -0.007 4.007 19 C -0.149 4.149 20 C 0.029 3.971 21 H 0.080 0.920 22 C -0.228 4.228 23 O -0.301 6.301 24 C -0.066 4.066 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.102 0.898 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.139 0.861 31 H 0.094 0.906 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.055 0.945 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.221 -8.042 3.536 8.787 hybrid contribution 0.578 0.660 0.446 0.984 sum 0.800 -7.382 3.981 8.425 Atomic orbital electron populations 1.22785 0.80904 1.01900 1.00518 1.86090 1.19326 1.28436 1.89512 1.19216 0.91365 0.83205 0.97257 1.20296 0.97271 0.92273 1.24103 1.20217 0.95024 0.95079 0.99259 1.20931 0.92020 0.98893 1.08146 1.17624 0.93697 0.89155 0.87280 1.19510 0.91604 1.01558 1.34070 0.89545 1.26006 1.00856 0.95005 0.92553 1.69857 1.38687 1.10915 1.21520 0.86316 0.81585 0.78413 0.80204 1.18556 1.20287 1.18833 1.17858 0.84899 0.86285 1.21457 1.85968 1.70758 1.39536 1.26682 1.22413 0.97426 0.93270 0.87604 1.21565 1.00991 0.97225 0.95086 1.22114 0.86023 0.95093 0.93825 0.92030 1.22254 0.99663 0.99055 1.01870 1.87962 1.37560 1.86823 1.17717 1.22748 1.01724 1.00219 0.81887 0.93733 0.93643 0.89846 0.88480 0.89068 0.86072 0.90618 0.93868 0.94011 0.90766 0.90125 0.92804 0.91769 0.91475 0.89964 0.94522 0.93984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 9.81 101.05 0.99 1.57 16 2 O -0.32 -7.21 10.28 -34.29 -0.35 -7.56 16 3 C 0.13 3.32 6.69 -39.17 -0.26 3.06 16 4 C -0.32 -7.42 9.05 -39.21 -0.35 -7.78 16 5 C -0.08 -1.83 9.96 -40.01 -0.40 -2.23 16 6 C -0.18 -4.70 8.64 -39.26 -0.34 -5.04 16 7 C 0.13 3.42 5.58 -106.70 -0.60 2.82 16 8 C -0.44 -11.62 8.72 -37.83 -0.33 -11.95 16 9 H 0.09 2.27 7.65 -52.49 -0.40 1.87 16 10 C 0.07 1.84 5.14 -17.33 -0.09 1.75 16 11 N -0.79 -19.75 10.96 55.55 0.61 -19.14 16 12 Si 0.91 18.35 29.59 -169.99 -5.03 13.32 16 13 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 14 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 15 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 16 C -0.06 -1.57 5.77 -38.22 -0.22 -1.79 16 17 O -0.31 -7.88 9.14 -33.47 -0.31 -8.18 16 18 C 0.07 1.48 5.96 37.16 0.22 1.70 16 19 C -0.11 -1.93 5.29 -26.73 -0.14 -2.07 16 20 C 0.09 1.28 2.72 -26.73 -0.07 1.21 16 21 H 0.06 0.88 7.79 -51.93 -0.40 0.48 16 22 C -0.17 -2.02 9.53 37.16 0.35 -1.66 16 23 O -0.38 -6.00 9.88 -35.23 -0.35 -6.35 16 24 C 0.03 0.37 10.82 101.05 1.09 1.47 16 25 H 0.04 0.70 7.66 -51.93 -0.40 0.31 16 26 H 0.04 0.71 7.66 -51.93 -0.40 0.31 16 27 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.10 1.98 6.27 -52.48 -0.33 1.65 16 29 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 30 H 0.12 3.19 6.17 -52.49 -0.32 2.87 16 31 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 32 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.04 0.94 7.82 -51.93 -0.41 0.54 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.05 0.56 7.87 -51.92 -0.41 0.15 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.72 8.14 -51.94 -0.42 0.30 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.04 0.37 7.87 -51.93 -0.41 -0.04 16 41 H 0.04 0.51 8.08 -51.93 -0.42 0.09 16 LS Contribution 343.04 15.07 5.17 5.17 Total: -1.00 -29.63 343.04 -6.82 -36.45 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -6.41 Total: 5.23 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: -0.14 Total: -18.95 kcal Atomic # 7 Polarization: -19.75 SS G_CDS: 0.61 Total: -19.14 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -1.01 Total: -22.08 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.63 -6.82 -36.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225843202.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.490 kcal (2) G-P(sol) polarization free energy of solvation -29.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds