Wall clock time and date at job start Tue Mar 31 2020 01:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36001 * 116.99968 * 2 1 4 4 C 1.38707 * 120.02572 * 359.97155 * 3 2 1 5 5 C 1.38772 * 120.53952 * 180.02562 * 4 3 2 6 6 C 1.36494 * 120.58191 * 0.04716 * 5 4 3 7 7 C 1.40766 * 120.02047 * 359.95428 * 6 5 4 8 8 C 1.41180 * 120.26605 * 180.02562 * 7 6 5 9 9 H 1.07998 * 120.00391 * 204.77028 * 8 7 6 10 10 C 1.39927 * 119.99743 * 24.76356 * 8 7 6 11 11 N 1.30874 * 119.99812 * 17.68705 * 10 8 7 12 12 Si 1.86794 * 119.99944 * 197.68617 * 10 8 7 13 13 H 1.48505 * 109.47299 * 59.99887 * 12 10 8 14 14 H 1.48498 * 109.47357 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47416 * 300.00151 * 12 10 8 16 16 C 1.38886 * 120.02026 * 179.97438 * 3 2 1 17 17 O 1.35741 * 120.28249 * 0.25133 * 16 3 2 18 18 C 1.42899 * 117.00148 * 269.72244 * 17 16 3 19 19 C 1.52997 * 109.47029 * 179.97438 * 18 17 16 20 20 C 1.53001 * 109.46888 * 179.97438 * 19 18 17 21 21 H 1.08996 * 109.47157 * 305.00098 * 20 19 18 22 22 C 1.53006 * 109.46705 * 185.00379 * 20 19 18 23 23 O 1.42899 * 109.47119 * 65.00631 * 20 19 18 24 24 C 1.42904 * 113.99796 * 210.00020 * 23 20 19 25 25 H 1.09002 * 109.47200 * 300.00482 * 1 2 3 26 26 H 1.09000 * 109.46778 * 60.00383 * 1 2 3 27 27 H 1.09001 * 109.47633 * 180.02562 * 1 2 3 28 28 H 1.08003 * 119.73065 * 0.05134 * 4 3 2 29 29 H 1.07999 * 119.71160 * 180.02562 * 5 4 3 30 30 H 1.08002 * 119.98695 * 179.97438 * 6 5 4 31 31 H 0.96998 * 119.99655 * 180.02562 * 11 10 8 32 32 H 1.08994 * 109.46955 * 299.99876 * 18 17 16 33 33 H 1.08997 * 109.46974 * 60.00091 * 18 17 16 34 34 H 1.08999 * 109.47154 * 300.00287 * 19 18 17 35 35 H 1.09001 * 109.46943 * 59.99781 * 19 18 17 36 36 H 1.09008 * 109.46744 * 180.02562 * 22 20 19 37 37 H 1.08996 * 109.47083 * 299.99764 * 22 20 19 38 38 H 1.08989 * 109.47464 * 60.00087 * 22 20 19 39 39 H 1.09000 * 109.46692 * 179.97438 * 24 23 20 40 40 H 1.09004 * 109.46901 * 299.99299 * 24 23 20 41 41 H 1.08997 * 109.47084 * 59.99779 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2915 2.3754 -0.0006 5 6 1.9104 3.6175 -0.0011 6 6 3.2718 3.7150 -0.0021 7 6 4.0614 2.5496 -0.0015 8 6 5.4700 2.6444 -0.0019 9 1 6.0658 1.8331 -0.3934 10 6 6.0942 3.7896 0.5048 11 7 5.4299 4.6079 1.2807 12 14 7.8756 4.1504 0.0739 13 1 8.0103 4.2901 -1.3984 14 1 8.2979 5.4133 0.7311 15 1 8.7348 3.0349 0.5459 16 6 3.4334 1.2850 0.0005 17 8 4.1787 0.1505 -0.0041 18 6 4.5399 -0.3937 1.2669 19 6 5.3714 -1.6614 1.0612 20 6 5.7586 -2.2437 2.4221 21 1 6.2672 -1.4812 3.0121 22 6 6.6926 -3.4383 2.2185 23 8 4.5811 -2.6714 3.1097 24 6 4.6776 -2.5903 4.5332 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 0.2132 2.3143 -0.0002 29 1 1.3096 4.5149 -0.0012 30 1 3.7434 4.6866 -0.0029 31 1 5.8626 5.4020 1.6316 32 1 5.1250 0.3389 1.8227 33 1 3.6374 -0.6384 1.8270 34 1 4.7858 -2.3938 0.5055 35 1 6.2738 -1.4170 0.5009 36 1 6.9681 -3.8534 3.1881 37 1 6.1840 -4.2007 1.6285 38 1 7.5907 -3.1122 1.6941 39 1 3.7442 -2.9319 4.9805 40 1 5.4980 -3.2197 4.8782 41 1 4.8640 -1.5572 4.8264 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225843202.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:09 Heat of formation + Delta-G solvation = -131.929691 kcal Electronic energy + Delta-G solvation = -22447.541259 eV Core-core repulsion = 19099.171876 eV Total energy + Delta-G solvation = -3348.369383 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.83785 -39.51890 -38.67556 -37.54708 -35.34880 -34.22144 -31.44913 -30.68714 -29.56672 -28.02610 -27.54615 -26.87582 -24.29251 -22.68315 -22.40131 -22.01096 -19.68372 -18.29675 -17.90125 -17.57818 -17.27819 -16.64950 -16.51717 -16.16512 -16.04843 -15.67144 -15.39517 -15.08493 -14.70639 -14.41862 -13.97247 -13.65802 -13.44312 -13.39226 -13.09698 -13.02210 -12.71726 -12.63080 -12.41381 -12.37929 -12.16915 -12.12311 -11.90868 -11.67903 -11.60936 -11.39507 -11.02482 -10.59767 -10.35849 -9.37051 -8.79549 -8.62833 -6.40417 0.79635 1.03155 1.37080 1.48303 1.53236 2.17998 2.61251 2.69669 2.83558 3.07168 3.68182 4.00346 4.01784 4.18968 4.31400 4.33102 4.44731 4.47750 4.49116 4.50618 4.59879 4.60237 4.68265 4.75105 4.79610 4.85552 4.94878 4.98328 5.02306 5.08667 5.16935 5.24212 5.28758 5.33491 5.73102 5.89040 6.00864 6.09205 6.28445 6.46982 6.64399 6.77794 6.87599 7.33462 8.24342 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.010712 B = 0.007172 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.284172 B = 3903.221279 C = 5898.879144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.340 6.340 3 C 0.126 3.874 4 C -0.316 4.316 5 C -0.076 4.076 6 C -0.205 4.205 7 C 0.097 3.903 8 C -0.470 4.470 9 H 0.075 0.925 10 C 0.039 3.961 11 N -0.811 5.811 12 Si 0.982 3.018 13 H -0.260 1.260 14 H -0.262 1.262 15 H -0.258 1.258 16 C -0.089 4.089 17 O -0.328 6.328 18 C 0.076 3.924 19 C -0.104 4.104 20 C 0.088 3.912 21 H 0.062 0.938 22 C -0.163 4.163 23 O -0.408 6.408 24 C 0.025 3.975 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.116 0.884 28 H 0.131 0.869 29 H 0.122 0.878 30 H 0.111 0.889 31 H 0.293 0.707 32 H 0.023 0.977 33 H 0.026 0.974 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.060 0.940 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.333 -8.536 4.034 9.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.254 6.254 3 C 0.081 3.919 4 C -0.336 4.336 5 C -0.094 4.094 6 C -0.224 4.224 7 C 0.094 3.906 8 C -0.498 4.498 9 H 0.093 0.907 10 C -0.178 4.178 11 N -0.436 5.436 12 Si 0.802 3.198 13 H -0.184 1.184 14 H -0.186 1.186 15 H -0.182 1.182 16 C -0.135 4.135 17 O -0.245 6.245 18 C 0.001 3.999 19 C -0.141 4.141 20 C 0.031 3.969 21 H 0.080 0.920 22 C -0.220 4.220 23 O -0.328 6.328 24 C -0.071 4.071 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.134 0.866 28 H 0.148 0.852 29 H 0.140 0.860 30 H 0.129 0.871 31 H 0.104 0.896 32 H 0.041 0.959 33 H 0.045 0.955 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.114 0.886 40 H 0.078 0.922 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.330 -8.680 3.947 9.541 hybrid contribution 0.358 0.800 0.363 0.949 sum 0.688 -7.879 4.310 9.007 Atomic orbital electron populations 1.23175 0.77724 1.04564 1.01539 1.86053 1.22602 1.27510 1.89234 1.19352 0.91219 0.84576 0.96722 1.20650 0.98898 0.91449 1.22592 1.20561 0.94472 0.96668 0.97745 1.20941 0.93174 0.98137 1.10192 1.17992 0.94541 0.90017 0.88044 1.19617 0.91733 1.02651 1.35801 0.90708 1.26809 1.05238 0.94058 0.91683 1.69883 1.40670 1.11350 1.21675 0.85258 0.75878 0.78831 0.79881 1.18407 1.18591 1.18240 1.18196 0.86204 0.86510 1.22560 1.85908 1.70880 1.39297 1.28437 1.22439 0.96971 0.94351 0.86152 1.21570 1.00348 0.94922 0.97268 1.22121 0.86293 0.96424 0.92105 0.92009 1.22187 0.99178 0.97544 1.03118 1.87913 1.38326 1.86918 1.19656 1.22941 1.03489 1.00519 0.80147 0.92736 0.92393 0.86565 0.85154 0.85986 0.87086 0.89635 0.95905 0.95533 0.91010 0.89396 0.90989 0.91757 0.90268 0.88637 0.92171 0.94571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.76 9.81 113.37 1.11 1.87 16 2 O -0.34 -15.17 10.28 -79.67 -0.82 -15.99 16 3 C 0.13 6.31 6.69 22.54 0.15 6.46 16 4 C -0.32 -14.38 9.05 22.51 0.20 -14.17 16 5 C -0.08 -3.58 9.96 21.99 0.22 -3.36 16 6 C -0.20 -10.96 8.64 22.48 0.19 -10.77 16 7 C 0.10 5.50 5.58 -21.21 -0.12 5.39 16 8 C -0.47 -25.94 8.72 23.40 0.20 -25.74 16 9 H 0.07 4.14 7.65 -2.91 -0.02 4.12 16 10 C 0.04 1.95 5.14 85.24 0.44 2.39 16 11 N -0.81 -41.54 10.96 21.83 0.24 -41.30 16 12 Si 0.98 37.75 29.59 68.60 2.03 39.78 16 13 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 14 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 15 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 16 C -0.09 -4.91 5.77 23.15 0.13 -4.77 16 17 O -0.33 -17.26 9.14 -76.75 -0.70 -17.96 16 18 C 0.08 3.45 5.96 71.98 0.43 3.87 16 19 C -0.10 -3.64 5.29 30.59 0.16 -3.48 16 20 C 0.09 2.54 2.72 30.60 0.08 2.63 16 21 H 0.06 1.75 7.79 -2.39 -0.02 1.74 16 22 C -0.16 -3.52 9.53 71.98 0.69 -2.83 16 23 O -0.41 -12.62 9.88 -148.98 -1.47 -14.09 16 24 C 0.03 0.58 10.82 113.37 1.23 1.80 16 25 H 0.05 1.58 7.66 -2.39 -0.02 1.57 16 26 H 0.06 1.66 7.66 -2.39 -0.02 1.64 16 27 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 28 H 0.13 4.94 6.27 -2.91 -0.02 4.93 16 29 H 0.12 4.87 8.06 -2.91 -0.02 4.85 16 30 H 0.11 6.04 6.17 -2.91 -0.02 6.02 16 31 H 0.29 13.41 8.30 -92.71 -0.77 12.64 16 32 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.03 1.25 7.82 -2.39 -0.02 1.23 16 34 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 36 H 0.07 1.30 7.87 -2.38 -0.02 1.28 16 37 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.06 1.09 7.87 -2.38 -0.02 1.07 16 41 H 0.04 0.86 8.08 -2.39 -0.02 0.84 16 Total: -1.00 -66.40 343.04 5.40 -60.99 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: 1.00 Total: 29.27 kcal Atomic # 6 Polarization: -45.83 SS G_CDS: 5.12 Total: -40.71 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.24 Total: -41.30 kcal Atomic # 8 Polarization: -45.04 SS G_CDS: -2.99 Total: -48.04 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 2.03 Total: 39.78 kcal Total: -66.40 5.40 -60.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225843202.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.937 kcal (2) G-P(sol) polarization free energy of solvation -66.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds