Wall clock time and date at job start Tue Mar 31 2020 01:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 114.00538 * 2 1 4 4 C 1.52993 * 109.47448 * 156.45753 * 3 2 1 5 5 C 1.53001 * 109.46966 * 295.00056 * 4 3 2 6 6 H 1.08999 * 109.47252 * 54.99787 * 5 4 3 7 7 C 1.53006 * 109.47054 * 174.99851 * 5 4 3 8 8 O 1.42903 * 109.47291 * 294.99971 * 5 4 3 9 9 C 1.35635 * 116.99969 * 154.92271 * 8 5 4 10 10 C 1.38448 * 120.26903 * 2.23269 * 9 8 5 11 11 C 1.38305 * 120.05177 * 179.74753 * 10 9 8 12 12 C 1.38824 * 120.59066 * 0.56005 * 11 10 9 13 13 C 1.36491 * 120.53971 * 359.69880 * 12 11 10 14 14 C 1.40725 * 119.92669 * 0.02562 * 13 12 11 15 15 C 1.41153 * 120.28990 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00032 * 144.70293 * 15 14 13 17 17 C 1.39935 * 120.00064 * 324.70773 * 15 14 13 18 18 N 1.30869 * 119.99967 * 355.92010 * 17 15 14 19 19 Si 1.86804 * 120.00036 * 175.91674 * 17 15 14 20 20 H 1.48504 * 109.46604 * 90.00165 * 19 17 15 21 21 H 1.48500 * 109.47033 * 209.99931 * 19 17 15 22 22 H 1.48499 * 109.47239 * 330.00092 * 19 17 15 23 23 O 1.42904 * 109.47035 * 276.45873 * 3 2 1 24 24 C 1.42904 * 114.00057 * 73.38524 * 23 3 2 25 25 H 1.09003 * 109.47216 * 295.12568 * 1 2 3 26 26 H 1.08998 * 109.47079 * 55.12180 * 1 2 3 27 27 H 1.08999 * 109.47599 * 175.12592 * 1 2 3 28 28 H 1.09004 * 109.46713 * 36.45186 * 3 2 1 29 29 H 1.09002 * 109.47573 * 55.00001 * 4 3 2 30 30 H 1.09002 * 109.47379 * 175.00327 * 4 3 2 31 31 H 1.09002 * 109.46705 * 60.00491 * 7 5 4 32 32 H 1.09006 * 109.46950 * 179.97438 * 7 5 4 33 33 H 1.08994 * 109.47210 * 300.00056 * 7 5 4 34 34 H 1.07996 * 119.96975 * 0.03245 * 10 9 8 35 35 H 1.07997 * 119.70453 * 180.28341 * 11 10 9 36 36 H 1.07994 * 119.73038 * 179.72030 * 12 11 10 37 37 H 1.07992 * 120.03599 * 180.02562 * 13 12 11 38 38 H 0.96998 * 119.99556 * 179.97438 * 18 17 15 39 39 H 1.09004 * 109.46823 * 45.01646 * 24 23 3 40 40 H 1.09000 * 109.46989 * 165.02002 * 24 23 3 41 41 H 1.08997 * 109.46980 * 285.01872 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.4258 1.2333 0.5761 5 6 3.3569 0.8209 2.0479 6 1 2.8030 -0.1135 2.1379 7 6 4.7745 0.6277 2.5902 8 8 2.6949 1.8412 2.7981 9 6 2.0867 1.4623 3.9497 10 6 2.1614 0.1481 4.3786 11 6 1.5439 -0.2323 5.5563 12 6 0.8355 0.6913 6.3129 13 6 0.7419 1.9920 5.9100 14 6 1.3665 2.4046 4.7183 15 6 1.2751 3.7479 4.2947 16 1 2.1107 4.2143 3.7940 17 6 0.1018 4.4754 4.5235 18 7 -0.9386 3.8882 5.0578 19 14 0.0206 6.2848 4.0664 20 1 -0.4627 6.4210 2.6688 21 1 -0.9136 6.9857 4.9837 22 1 1.3733 6.8861 4.1832 23 8 2.0656 1.8021 -1.3388 24 6 0.7966 2.1941 -1.8662 25 1 -0.3634 0.4364 0.9304 26 1 -0.3633 0.5876 -0.8431 27 1 -0.3634 -1.0239 -0.0873 28 1 1.4029 1.9735 0.6106 29 1 4.0077 0.4985 0.0198 30 1 3.9015 2.2107 0.4946 31 1 5.3284 1.5622 2.5003 32 1 4.7255 0.3343 3.6389 33 1 5.2795 -0.1506 2.0181 34 1 2.7061 -0.5796 3.7955 35 1 1.6096 -1.2580 5.8879 36 1 0.3550 0.3782 7.2279 37 1 0.1892 2.7038 6.5050 38 1 -1.7517 4.3926 5.2167 39 1 0.2584 2.7793 -1.1206 40 1 0.9460 2.7963 -2.7624 41 1 0.2177 1.3056 -2.1179 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230276518.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:18 Heat of formation + Delta-G solvation = -114.741082 kcal Electronic energy + Delta-G solvation = -22948.768795 eV Core-core repulsion = 19601.144766 eV Total energy + Delta-G solvation = -3347.624029 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.43963 -38.58969 -36.41590 -35.75697 -33.50082 -32.87137 -29.78244 -29.12254 -28.54978 -26.61667 -25.86790 -25.08805 -22.92523 -21.86577 -20.69623 -19.70029 -17.60553 -17.18825 -17.02498 -16.47484 -15.85214 -15.19034 -14.49910 -14.34648 -14.23700 -14.13286 -13.65771 -13.47692 -13.37999 -12.82940 -12.56940 -12.39413 -12.31035 -12.05310 -11.66790 -11.49533 -11.30482 -11.21765 -11.06547 -10.96762 -10.71423 -10.52968 -10.28938 -9.91901 -9.76229 -9.70513 -9.65454 -9.33178 -9.16522 -7.38705 -6.91974 -6.58332 -4.25292 2.77918 2.98938 3.11356 3.16907 3.19838 3.64472 3.94931 4.02086 4.29890 4.73468 5.00881 5.19518 5.21462 5.32837 5.35261 5.46079 5.54002 5.58763 5.62182 5.69614 5.77591 5.85349 5.91852 6.03341 6.04404 6.12557 6.26511 6.36644 6.47263 6.55018 6.94739 7.15383 7.16100 7.23592 7.32535 7.39804 7.73810 7.83399 8.06243 8.24230 8.43041 8.75870 8.92236 9.10401 10.36028 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.012343 B = 0.007196 C = 0.005563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.863064 B = 3890.262183 C = 5031.901653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.394 6.394 3 C 0.241 3.759 4 C -0.093 4.093 5 C 0.083 3.917 6 H 0.075 0.925 7 C -0.173 4.173 8 O -0.303 6.303 9 C 0.027 3.973 10 C -0.185 4.185 11 C -0.200 4.200 12 C -0.135 4.135 13 C -0.128 4.128 14 C 0.094 3.906 15 C -0.452 4.452 16 H 0.078 0.922 17 C 0.070 3.930 18 N -0.817 5.817 19 Si 0.909 3.091 20 H -0.272 1.272 21 H -0.279 1.279 22 H -0.263 1.263 23 O -0.397 6.397 24 C 0.023 3.977 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.123 0.877 38 H 0.276 0.724 39 H 0.046 0.954 40 H 0.082 0.918 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.824 -3.734 -8.287 9.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.315 6.315 3 C 0.146 3.854 4 C -0.130 4.130 5 C 0.026 3.974 6 H 0.093 0.907 7 C -0.230 4.230 8 O -0.218 6.218 9 C -0.017 4.017 10 C -0.204 4.204 11 C -0.219 4.219 12 C -0.154 4.154 13 C -0.148 4.148 14 C 0.091 3.909 15 C -0.483 4.483 16 H 0.096 0.904 17 C -0.144 4.144 18 N -0.445 5.445 19 Si 0.735 3.265 20 H -0.198 1.198 21 H -0.204 1.204 22 H -0.187 1.187 23 O -0.318 6.318 24 C -0.073 4.073 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.117 0.883 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.140 0.860 38 H 0.087 0.913 39 H 0.065 0.935 40 H 0.101 0.899 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.877 -3.626 -8.395 9.586 hybrid contribution -0.739 0.668 -0.108 1.001 sum 2.138 -2.958 -8.502 9.253 Atomic orbital electron populations 1.23106 0.81111 1.02903 1.00977 1.87945 1.19920 1.29794 1.93792 1.23484 0.96239 0.82966 0.82691 1.21501 0.93612 1.04164 0.93727 1.22069 0.93288 0.92582 0.89459 0.90715 1.22289 0.96561 1.02077 1.02114 1.86005 1.67318 1.34645 1.33786 1.19306 1.02250 0.92586 0.87592 1.20691 1.05915 0.94736 0.99070 1.20213 1.05976 0.97866 0.97890 1.20422 1.01097 0.94626 0.99257 1.20908 1.02916 0.94963 0.95999 1.17072 0.91198 0.92406 0.90179 1.19305 0.99766 0.95644 1.33590 0.90431 1.25803 0.95187 0.99943 0.93457 1.69784 1.02676 1.37274 1.34793 0.86295 0.79052 0.82353 0.78842 1.19791 1.20393 1.18657 1.87964 1.30066 1.81963 1.31789 1.22986 0.86074 0.99050 0.99239 0.93017 0.93466 0.89753 0.90807 0.89280 0.88957 0.91867 0.91579 0.92022 0.88344 0.89322 0.89321 0.85961 0.91304 0.93489 0.89919 0.93453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.66 101.05 1.08 1.29 16 2 O -0.39 -6.66 10.02 -59.04 -0.59 -7.25 16 3 C 0.24 4.07 2.80 37.15 0.10 4.18 16 4 C -0.09 -1.46 5.00 -26.73 -0.13 -1.59 16 5 C 0.08 1.47 2.18 -26.73 -0.06 1.41 16 6 H 0.07 1.37 5.70 -51.93 -0.30 1.08 16 7 C -0.17 -2.62 9.22 37.16 0.34 -2.27 16 8 O -0.30 -6.73 8.67 -18.61 -0.16 -6.89 16 9 C 0.03 0.66 6.63 -38.33 -0.25 0.40 16 10 C -0.19 -4.14 8.31 -39.48 -0.33 -4.47 16 11 C -0.20 -4.45 10.04 -39.34 -0.39 -4.85 16 12 C -0.14 -3.17 9.97 -40.00 -0.40 -3.57 16 13 C -0.13 -3.32 8.57 -39.27 -0.34 -3.66 16 14 C 0.09 2.51 5.51 -106.68 -0.59 1.92 16 15 C -0.45 -12.16 8.61 -37.84 -0.33 -12.48 16 16 H 0.08 2.08 7.79 -52.49 -0.41 1.67 16 17 C 0.07 1.79 5.33 -17.33 -0.09 1.70 16 18 N -0.82 -21.37 10.97 55.55 0.61 -20.76 16 19 Si 0.91 19.29 29.56 -169.99 -5.03 14.26 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 21 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 22 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 23 O -0.40 -6.34 10.61 -59.04 -0.63 -6.97 16 24 C 0.02 0.29 9.82 101.05 0.99 1.28 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.59 4.57 -51.93 -0.24 0.36 16 27 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.07 1.40 7.17 -51.93 -0.37 1.03 16 29 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.07 1.07 7.16 -51.93 -0.37 0.70 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.10 1.96 5.56 -52.49 -0.29 1.67 16 35 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 36 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 37 H 0.12 3.27 6.49 -52.49 -0.34 2.93 16 38 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 39 H 0.05 0.60 7.83 -51.93 -0.41 0.20 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.05 0.55 5.96 -51.93 -0.31 0.24 16 LS Contribution 333.42 15.07 5.02 5.02 Total: -1.00 -28.96 333.42 -7.14 -36.10 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -5.97 Total: 7.20 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: -0.39 Total: -20.71 kcal Atomic # 7 Polarization: -21.37 SS G_CDS: 0.61 Total: -20.76 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -1.38 Total: -21.12 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.03 Total: 14.26 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.96 -7.14 -36.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276518.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.642 kcal (2) G-P(sol) polarization free energy of solvation -28.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds