Wall clock time and date at job start Tue Mar 31 2020 01:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 114.00538 * 2 1 4 4 C 1.52993 * 109.47448 * 156.45753 * 3 2 1 5 5 C 1.53001 * 109.46966 * 295.00056 * 4 3 2 6 6 H 1.08999 * 109.47252 * 54.99787 * 5 4 3 7 7 C 1.53006 * 109.47054 * 174.99851 * 5 4 3 8 8 O 1.42903 * 109.47291 * 294.99971 * 5 4 3 9 9 C 1.35635 * 116.99969 * 154.92271 * 8 5 4 10 10 C 1.38448 * 120.26903 * 2.23269 * 9 8 5 11 11 C 1.38305 * 120.05177 * 179.74753 * 10 9 8 12 12 C 1.38824 * 120.59066 * 0.56005 * 11 10 9 13 13 C 1.36491 * 120.53971 * 359.69880 * 12 11 10 14 14 C 1.40725 * 119.92669 * 0.02562 * 13 12 11 15 15 C 1.41153 * 120.28990 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00032 * 144.70293 * 15 14 13 17 17 C 1.39935 * 120.00064 * 324.70773 * 15 14 13 18 18 N 1.30869 * 119.99967 * 355.92010 * 17 15 14 19 19 Si 1.86804 * 120.00036 * 175.91674 * 17 15 14 20 20 H 1.48504 * 109.46604 * 90.00165 * 19 17 15 21 21 H 1.48500 * 109.47033 * 209.99931 * 19 17 15 22 22 H 1.48499 * 109.47239 * 330.00092 * 19 17 15 23 23 O 1.42904 * 109.47035 * 276.45873 * 3 2 1 24 24 C 1.42904 * 114.00057 * 73.38524 * 23 3 2 25 25 H 1.09003 * 109.47216 * 295.12568 * 1 2 3 26 26 H 1.08998 * 109.47079 * 55.12180 * 1 2 3 27 27 H 1.08999 * 109.47599 * 175.12592 * 1 2 3 28 28 H 1.09004 * 109.46713 * 36.45186 * 3 2 1 29 29 H 1.09002 * 109.47573 * 55.00001 * 4 3 2 30 30 H 1.09002 * 109.47379 * 175.00327 * 4 3 2 31 31 H 1.09002 * 109.46705 * 60.00491 * 7 5 4 32 32 H 1.09006 * 109.46950 * 179.97438 * 7 5 4 33 33 H 1.08994 * 109.47210 * 300.00056 * 7 5 4 34 34 H 1.07996 * 119.96975 * 0.03245 * 10 9 8 35 35 H 1.07997 * 119.70453 * 180.28341 * 11 10 9 36 36 H 1.07994 * 119.73038 * 179.72030 * 12 11 10 37 37 H 1.07992 * 120.03599 * 180.02562 * 13 12 11 38 38 H 0.96998 * 119.99556 * 179.97438 * 18 17 15 39 39 H 1.09004 * 109.46823 * 45.01646 * 24 23 3 40 40 H 1.09000 * 109.46989 * 165.02002 * 24 23 3 41 41 H 1.08997 * 109.46980 * 285.01872 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.4258 1.2333 0.5761 5 6 3.3569 0.8209 2.0479 6 1 2.8030 -0.1135 2.1379 7 6 4.7745 0.6277 2.5902 8 8 2.6949 1.8412 2.7981 9 6 2.0867 1.4623 3.9497 10 6 2.1614 0.1481 4.3786 11 6 1.5439 -0.2323 5.5563 12 6 0.8355 0.6913 6.3129 13 6 0.7419 1.9920 5.9100 14 6 1.3665 2.4046 4.7183 15 6 1.2751 3.7479 4.2947 16 1 2.1107 4.2143 3.7940 17 6 0.1018 4.4754 4.5235 18 7 -0.9386 3.8882 5.0578 19 14 0.0206 6.2848 4.0664 20 1 -0.4627 6.4210 2.6688 21 1 -0.9136 6.9857 4.9837 22 1 1.3733 6.8861 4.1832 23 8 2.0656 1.8021 -1.3388 24 6 0.7966 2.1941 -1.8662 25 1 -0.3634 0.4364 0.9304 26 1 -0.3633 0.5876 -0.8431 27 1 -0.3634 -1.0239 -0.0873 28 1 1.4029 1.9735 0.6106 29 1 4.0077 0.4985 0.0198 30 1 3.9015 2.2107 0.4946 31 1 5.3284 1.5622 2.5003 32 1 4.7255 0.3343 3.6389 33 1 5.2795 -0.1506 2.0181 34 1 2.7061 -0.5796 3.7955 35 1 1.6096 -1.2580 5.8879 36 1 0.3550 0.3782 7.2279 37 1 0.1892 2.7038 6.5050 38 1 -1.7517 4.3926 5.2167 39 1 0.2584 2.7793 -1.1206 40 1 0.9460 2.7963 -2.7624 41 1 0.2177 1.3056 -2.1179 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230276518.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:17 Heat of formation + Delta-G solvation = -131.172800 kcal Electronic energy + Delta-G solvation = -22949.481328 eV Core-core repulsion = 19601.144766 eV Total energy + Delta-G solvation = -3348.336562 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.93070 -40.06985 -38.13707 -36.99474 -35.40303 -34.30580 -31.56491 -30.45655 -30.37079 -27.79531 -27.01382 -26.99107 -24.31177 -23.44597 -22.51576 -21.28448 -19.40158 -18.65552 -18.28504 -18.07910 -17.18958 -16.92161 -16.13108 -15.95151 -15.73305 -15.43590 -15.10446 -14.95529 -14.57925 -14.49117 -14.16037 -13.88780 -13.62524 -13.45332 -13.21614 -12.99399 -12.93610 -12.73697 -12.57172 -12.42443 -12.25756 -12.14058 -11.80884 -11.62877 -11.43034 -11.10336 -11.05885 -11.04204 -10.82086 -9.28460 -8.77960 -8.47118 -6.24402 0.94970 1.11295 1.36519 1.47082 1.49698 2.24431 2.43708 2.61870 2.81875 2.86546 3.67132 3.75273 3.89050 4.01315 4.11117 4.21150 4.30577 4.38523 4.40478 4.46328 4.48676 4.51844 4.62473 4.64269 4.71151 4.81764 4.82577 4.88826 5.02374 5.13772 5.24437 5.29340 5.46733 5.49640 5.88854 5.93121 5.95256 5.99774 6.16007 6.33744 6.53321 6.85450 6.97698 7.25992 8.47819 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.012343 B = 0.007196 C = 0.005563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.863064 B = 3890.262183 C = 5031.901653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.404 6.404 3 C 0.244 3.756 4 C -0.089 4.089 5 C 0.078 3.922 6 H 0.069 0.931 7 C -0.167 4.167 8 O -0.322 6.322 9 C 0.026 3.974 10 C -0.188 4.188 11 C -0.190 4.190 12 C -0.145 4.145 13 C -0.147 4.147 14 C 0.053 3.947 15 C -0.484 4.484 16 H 0.064 0.936 17 C 0.030 3.970 18 N -0.848 5.848 19 Si 0.976 3.024 20 H -0.267 1.267 21 H -0.267 1.267 22 H -0.262 1.262 23 O -0.406 6.406 24 C 0.014 3.986 25 H 0.026 0.974 26 H 0.065 0.935 27 H 0.108 0.892 28 H 0.042 0.958 29 H 0.115 0.885 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.096 0.904 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.113 0.887 37 H 0.103 0.897 38 H 0.282 0.718 39 H 0.039 0.961 40 H 0.108 0.892 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.541 -4.816 -9.531 11.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.325 6.325 3 C 0.149 3.851 4 C -0.126 4.126 5 C 0.022 3.978 6 H 0.086 0.914 7 C -0.224 4.224 8 O -0.237 6.237 9 C -0.019 4.019 10 C -0.207 4.207 11 C -0.209 4.209 12 C -0.163 4.163 13 C -0.167 4.167 14 C 0.051 3.949 15 C -0.516 4.516 16 H 0.083 0.917 17 C -0.181 4.181 18 N -0.477 5.477 19 Si 0.798 3.202 20 H -0.192 1.192 21 H -0.191 1.191 22 H -0.186 1.186 23 O -0.327 6.327 24 C -0.081 4.081 25 H 0.045 0.955 26 H 0.083 0.917 27 H 0.127 0.873 28 H 0.060 0.940 29 H 0.133 0.867 30 H 0.113 0.887 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.114 0.886 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.131 0.869 37 H 0.121 0.879 38 H 0.092 0.908 39 H 0.058 0.942 40 H 0.127 0.873 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.599 -4.726 -9.642 11.325 hybrid contribution -0.939 0.853 0.216 1.287 sum 2.660 -3.873 -9.426 10.532 Atomic orbital electron populations 1.23244 0.80117 1.04598 1.00444 1.87918 1.21074 1.29626 1.93865 1.23324 0.96326 0.82519 0.82908 1.21527 0.93369 1.05136 0.92562 1.22374 0.94167 0.91215 0.90093 0.91358 1.22251 0.95003 1.03396 1.01731 1.85975 1.67521 1.36898 1.33346 1.19414 1.01522 0.92973 0.88010 1.21012 1.05809 0.94448 0.99424 1.20666 1.03957 0.99240 0.97077 1.20698 1.01371 0.93849 1.00400 1.20863 1.03698 0.95972 0.96145 1.17434 0.92936 0.93292 0.91258 1.19389 1.00291 0.96628 1.35260 0.91744 1.26567 0.94378 1.04065 0.93093 1.69850 1.03182 1.38890 1.35746 0.85293 0.79119 0.76988 0.78826 1.19197 1.19097 1.18574 1.87939 1.31736 1.82030 1.30996 1.23215 0.85109 0.99948 0.99840 0.95537 0.91682 0.87350 0.94021 0.86652 0.88690 0.91666 0.92793 0.88555 0.85631 0.85752 0.86920 0.87856 0.90773 0.94250 0.87334 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.33 10.66 113.37 1.21 1.53 16 2 O -0.40 -13.25 10.02 -126.21 -1.26 -14.51 16 3 C 0.24 8.16 2.80 71.98 0.20 8.37 16 4 C -0.09 -2.68 5.00 30.59 0.15 -2.53 16 5 C 0.08 2.67 2.18 30.60 0.07 2.73 16 6 H 0.07 2.41 5.70 -2.39 -0.01 2.40 16 7 C -0.17 -4.68 9.22 71.98 0.66 -4.02 16 8 O -0.32 -14.58 8.67 -89.49 -0.78 -15.35 16 9 C 0.03 1.26 6.63 23.08 0.15 1.42 16 10 C -0.19 -8.21 8.31 22.34 0.19 -8.03 16 11 C -0.19 -8.11 10.04 22.43 0.23 -7.89 16 12 C -0.14 -6.72 9.97 22.00 0.22 -6.50 16 13 C -0.15 -7.86 8.57 22.47 0.19 -7.66 16 14 C 0.05 2.94 5.51 -21.20 -0.12 2.82 16 15 C -0.48 -27.30 8.61 23.40 0.20 -27.10 16 16 H 0.06 3.64 7.79 -2.91 -0.02 3.62 16 17 C 0.03 1.57 5.33 85.25 0.45 2.02 16 18 N -0.85 -45.93 10.97 21.83 0.24 -45.69 16 19 Si 0.98 40.53 29.56 68.60 2.03 42.56 16 20 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 21 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 22 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 23 O -0.41 -12.49 10.61 -126.21 -1.34 -13.83 16 24 C 0.01 0.35 9.82 113.37 1.11 1.46 16 25 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.06 1.57 4.57 -2.39 -0.01 1.56 16 27 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.04 1.66 7.17 -2.38 -0.02 1.64 16 29 H 0.12 2.87 8.14 -2.39 -0.02 2.86 16 30 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 31 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.05 1.65 7.16 -2.38 -0.02 1.63 16 33 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.13 4.72 5.56 -2.91 -0.02 4.70 16 35 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 36 H 0.11 4.57 8.06 -2.91 -0.02 4.54 16 37 H 0.10 5.80 6.49 -2.91 -0.02 5.78 16 38 H 0.28 13.94 8.30 -92.71 -0.77 13.18 16 39 H 0.04 1.00 7.83 -2.39 -0.02 0.98 16 40 H 0.11 2.03 8.14 -2.39 -0.02 2.02 16 41 H 0.06 1.28 5.96 -2.39 -0.01 1.27 16 Total: -1.00 -64.36 333.42 4.83 -59.53 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: 1.02 Total: 30.66 kcal Atomic # 6 Polarization: -48.29 SS G_CDS: 4.92 Total: -43.37 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: 0.24 Total: -45.69 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: -3.38 Total: -43.70 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Total: -64.36 4.83 -59.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276518.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.640 kcal (2) G-P(sol) polarization free energy of solvation -64.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds