Wall clock time and date at job start Tue Mar 31 2020 01:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42891 * 114.00374 * 2 1 4 4 C 1.53005 * 109.46977 * 198.51067 * 3 2 1 5 5 C 1.52992 * 109.47207 * 64.99690 * 4 3 2 6 6 H 1.09001 * 109.47274 * 304.99588 * 5 4 3 7 7 C 1.53005 * 109.47216 * 184.99821 * 5 4 3 8 8 O 1.42898 * 109.47462 * 65.00081 * 5 4 3 9 9 C 1.35646 * 117.00128 * 203.62239 * 8 5 4 10 10 C 1.38448 * 120.26538 * 354.39013 * 9 8 5 11 11 C 1.38308 * 120.04986 * 179.74592 * 10 9 8 12 12 C 1.38819 * 120.58993 * 0.56600 * 11 10 9 13 13 C 1.36485 * 120.54073 * 359.69552 * 12 11 10 14 14 C 1.40727 * 119.92972 * 0.02562 * 13 12 11 15 15 C 1.41154 * 120.29098 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00321 * 208.26738 * 15 14 13 17 17 C 1.39937 * 119.99694 * 28.27687 * 15 14 13 18 18 N 1.30862 * 119.99979 * 12.44162 * 17 15 14 19 19 Si 1.86801 * 119.99813 * 192.44465 * 17 15 14 20 20 H 1.48495 * 109.47302 * 59.99599 * 19 17 15 21 21 H 1.48500 * 109.47315 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47176 * 299.99707 * 19 17 15 23 23 O 1.42898 * 109.47739 * 78.50608 * 3 2 1 24 24 C 1.42897 * 113.99966 * 284.43612 * 23 3 2 25 25 H 1.09010 * 109.46884 * 49.64180 * 1 2 3 26 26 H 1.08997 * 109.47594 * 169.63665 * 1 2 3 27 27 H 1.08998 * 109.47407 * 289.64807 * 1 2 3 28 28 H 1.09004 * 109.47012 * 318.49992 * 3 2 1 29 29 H 1.08999 * 109.47283 * 304.99262 * 4 3 2 30 30 H 1.08999 * 109.46808 * 184.99458 * 4 3 2 31 31 H 1.08996 * 109.47608 * 179.97438 * 7 5 4 32 32 H 1.08998 * 109.47282 * 300.00239 * 7 5 4 33 33 H 1.09008 * 109.46544 * 59.99756 * 7 5 4 34 34 H 1.07999 * 119.97297 * 0.03256 * 10 9 8 35 35 H 1.08000 * 119.70407 * 180.28070 * 11 10 9 36 36 H 1.07995 * 119.73126 * 179.71969 * 12 11 10 37 37 H 1.08001 * 120.03904 * 180.02562 * 13 12 11 38 38 H 0.96999 * 119.99597 * 180.02562 * 18 17 15 39 39 H 1.09001 * 109.47373 * 316.28395 * 24 23 3 40 40 H 1.09006 * 109.47014 * 76.28097 * 24 23 3 41 41 H 1.08996 * 109.47526 * 196.27833 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.4673 1.2147 -0.4580 5 6 3.5161 0.7499 -1.9148 6 1 2.9698 -0.1880 -2.0154 7 6 4.9723 0.5395 -2.3345 8 8 2.9178 1.7418 -2.7516 9 6 2.4304 1.3262 -3.9473 10 6 2.6248 0.0204 -4.3643 11 6 2.1214 -0.4000 -5.5820 12 6 1.4289 0.4804 -6.4021 13 6 1.2280 1.7744 -6.0172 14 6 1.7255 2.2243 -4.7801 15 6 1.5216 3.5608 -4.3743 16 1 2.2301 4.0388 -3.7142 17 6 0.4011 4.2663 -4.8273 18 7 -0.5769 3.6302 -5.4200 19 14 0.3017 6.1159 -4.5858 20 1 1.4410 6.7678 -5.2803 21 1 -0.9757 6.6209 -5.1501 22 1 0.3610 6.4298 -3.1356 23 8 1.9588 1.8498 1.3202 24 6 0.6617 2.3037 1.7116 25 1 -0.3633 0.6655 -0.7832 26 1 -0.3634 -1.0108 -0.1849 27 1 -0.3634 0.3455 0.9678 28 1 1.4549 1.9504 -0.6810 29 1 4.0017 0.5012 0.1692 30 1 3.9363 2.1951 -0.3735 31 1 5.0071 0.2079 -3.3722 32 1 5.5186 1.4773 -2.2339 33 1 5.4286 -0.2172 -1.6961 34 1 3.1660 -0.6717 -3.7362 35 1 2.2724 -1.4211 -5.8998 36 1 1.0457 0.1386 -7.3521 37 1 0.6877 2.4523 -6.6614 38 1 -1.3534 4.1194 -5.7343 39 1 0.2079 2.8588 0.8905 40 1 0.0362 1.4462 1.9598 41 1 0.7512 2.9524 2.5829 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230276519.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:20 Heat of formation + Delta-G solvation = -115.114883 kcal Electronic energy + Delta-G solvation = -22915.166113 eV Core-core repulsion = 19567.525875 eV Total energy + Delta-G solvation = -3347.640238 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.42405 -38.58317 -36.40259 -35.74116 -33.55987 -32.86544 -29.80514 -29.10515 -28.53471 -26.60654 -25.85476 -25.10607 -22.89388 -21.84577 -20.67581 -19.71899 -17.58989 -17.21064 -17.03541 -16.48623 -15.83389 -15.22380 -14.50247 -14.36141 -14.21954 -14.12047 -13.68356 -13.44088 -13.37388 -12.83003 -12.56131 -12.37741 -12.26055 -12.03364 -11.63330 -11.50596 -11.34013 -11.22632 -11.03878 -10.97952 -10.73820 -10.52021 -10.30606 -9.90739 -9.77188 -9.67915 -9.61145 -9.34641 -9.17043 -7.42156 -6.96297 -6.63963 -4.23720 2.78484 3.01672 3.08763 3.12595 3.22196 3.66191 3.94812 3.98161 4.31793 4.69250 5.00886 5.15393 5.22519 5.34395 5.36793 5.50159 5.52383 5.59788 5.65259 5.70091 5.77785 5.87910 5.92605 6.03926 6.05861 6.13820 6.29270 6.38032 6.49364 6.56641 6.98174 7.14139 7.15210 7.25236 7.33585 7.40583 7.77031 7.81525 8.08963 8.24644 8.44319 8.74541 8.89650 9.11191 10.28066 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.012431 B = 0.007064 C = 0.005470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.868680 B = 3962.667528 C = 5117.152374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.393 6.393 3 C 0.241 3.759 4 C -0.092 4.092 5 C 0.086 3.914 6 H 0.074 0.926 7 C -0.175 4.175 8 O -0.304 6.304 9 C 0.019 3.981 10 C -0.179 4.179 11 C -0.209 4.209 12 C -0.131 4.131 13 C -0.140 4.140 14 C 0.096 3.904 15 C -0.448 4.448 16 H 0.079 0.921 17 C 0.072 3.928 18 N -0.806 5.806 19 Si 0.908 3.092 20 H -0.265 1.265 21 H -0.280 1.280 22 H -0.267 1.267 23 O -0.398 6.398 24 C 0.020 3.980 25 H 0.050 0.950 26 H 0.084 0.916 27 H 0.046 0.954 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.124 0.876 38 H 0.278 0.722 39 H 0.047 0.953 40 H 0.048 0.952 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.104 -2.961 8.609 9.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.313 6.313 3 C 0.146 3.854 4 C -0.129 4.129 5 C 0.028 3.972 6 H 0.092 0.908 7 C -0.232 4.232 8 O -0.220 6.220 9 C -0.025 4.025 10 C -0.198 4.198 11 C -0.229 4.229 12 C -0.149 4.149 13 C -0.160 4.160 14 C 0.093 3.907 15 C -0.478 4.478 16 H 0.097 0.903 17 C -0.144 4.144 18 N -0.433 5.433 19 Si 0.733 3.267 20 H -0.189 1.189 21 H -0.205 1.205 22 H -0.192 1.192 23 O -0.319 6.319 24 C -0.076 4.076 25 H 0.069 0.931 26 H 0.102 0.898 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.116 0.884 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.141 0.859 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.136 -2.866 8.698 9.404 hybrid contribution -0.683 0.695 -0.052 0.975 sum 1.454 -2.171 8.646 9.032 Atomic orbital electron populations 1.23088 0.81174 1.03181 1.00384 1.87955 1.19874 1.29763 1.93756 1.23550 0.96057 0.82445 0.83307 1.21494 0.92912 1.04022 0.94520 1.22033 0.93704 0.92861 0.88569 0.90838 1.22328 0.96369 1.02087 1.02447 1.85976 1.73430 1.34947 1.27599 1.19197 1.04366 0.92787 0.86184 1.20688 1.05855 0.94984 0.98311 1.20170 1.07599 0.98214 0.96892 1.20393 1.01076 0.94922 0.98529 1.20898 1.03909 0.95107 0.96042 1.17066 0.91086 0.92461 0.90090 1.19344 1.06602 0.96279 1.25624 0.90266 1.25851 0.94800 1.00400 0.93339 1.69806 1.05653 1.37450 1.30430 0.86375 0.78185 0.82597 0.79571 1.18920 1.20495 1.19163 1.87954 1.30137 1.79177 1.34618 1.23050 0.85250 0.98775 1.00511 0.93133 0.89772 0.93564 0.90771 0.89290 0.88972 0.91464 0.91890 0.92061 0.88414 0.89431 0.89428 0.85860 0.91086 0.93412 0.93351 0.89984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.35 101.05 1.05 1.30 16 2 O -0.39 -6.68 10.05 -59.04 -0.59 -7.27 16 3 C 0.24 4.08 2.81 37.16 0.10 4.18 16 4 C -0.09 -1.45 5.00 -26.73 -0.13 -1.59 16 5 C 0.09 1.52 2.18 -26.73 -0.06 1.46 16 6 H 0.07 1.37 5.97 -51.93 -0.31 1.06 16 7 C -0.17 -2.66 9.14 37.16 0.34 -2.32 16 8 O -0.30 -6.80 8.59 -18.64 -0.16 -6.96 16 9 C 0.02 0.46 6.62 -38.33 -0.25 0.21 16 10 C -0.18 -4.05 8.19 -39.48 -0.32 -4.38 16 11 C -0.21 -4.72 10.04 -39.34 -0.39 -5.11 16 12 C -0.13 -3.09 9.97 -40.00 -0.40 -3.49 16 13 C -0.14 -3.64 8.61 -39.27 -0.34 -3.98 16 14 C 0.10 2.56 5.56 -106.68 -0.59 1.97 16 15 C -0.45 -12.01 8.70 -37.84 -0.33 -12.34 16 16 H 0.08 2.11 7.69 -52.49 -0.40 1.70 16 17 C 0.07 1.81 5.22 -17.33 -0.09 1.72 16 18 N -0.81 -20.88 10.90 55.55 0.61 -20.27 16 19 Si 0.91 19.02 29.58 -169.99 -5.03 13.99 16 20 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 23 O -0.40 -6.35 10.60 -59.04 -0.63 -6.97 16 24 C 0.02 0.26 10.11 101.05 1.02 1.28 16 25 H 0.05 0.78 7.88 -51.92 -0.41 0.37 16 26 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.05 0.57 5.05 -51.93 -0.26 0.30 16 28 H 0.07 1.41 7.01 -51.93 -0.36 1.05 16 29 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.07 1.10 6.75 -51.93 -0.35 0.75 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 34 H 0.10 1.96 5.38 -52.49 -0.28 1.68 16 35 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 37 H 0.12 3.30 6.24 -52.49 -0.33 2.97 16 38 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 39 H 0.05 0.61 7.78 -51.93 -0.40 0.21 16 40 H 0.05 0.56 5.46 -51.93 -0.28 0.27 16 41 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 332.00 15.07 5.00 5.00 Total: -1.00 -28.89 332.00 -7.11 -36.01 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -5.91 Total: 7.56 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: -0.40 Total: -21.08 kcal Atomic # 7 Polarization: -20.88 SS G_CDS: 0.61 Total: -20.27 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -1.38 Total: -21.20 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.89 -7.11 -36.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276519.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.109 kcal (2) G-P(sol) polarization free energy of solvation -28.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds