Wall clock time and date at job start Tue Mar 31 2020 01:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42891 * 114.00374 * 2 1 4 4 C 1.53005 * 109.46977 * 198.51067 * 3 2 1 5 5 C 1.52992 * 109.47207 * 64.99690 * 4 3 2 6 6 H 1.09001 * 109.47274 * 304.99588 * 5 4 3 7 7 C 1.53005 * 109.47216 * 184.99821 * 5 4 3 8 8 O 1.42898 * 109.47462 * 65.00081 * 5 4 3 9 9 C 1.35646 * 117.00128 * 203.62239 * 8 5 4 10 10 C 1.38448 * 120.26538 * 354.39013 * 9 8 5 11 11 C 1.38308 * 120.04986 * 179.74592 * 10 9 8 12 12 C 1.38819 * 120.58993 * 0.56600 * 11 10 9 13 13 C 1.36485 * 120.54073 * 359.69552 * 12 11 10 14 14 C 1.40727 * 119.92972 * 0.02562 * 13 12 11 15 15 C 1.41154 * 120.29098 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00321 * 208.26738 * 15 14 13 17 17 C 1.39937 * 119.99694 * 28.27687 * 15 14 13 18 18 N 1.30862 * 119.99979 * 12.44162 * 17 15 14 19 19 Si 1.86801 * 119.99813 * 192.44465 * 17 15 14 20 20 H 1.48495 * 109.47302 * 59.99599 * 19 17 15 21 21 H 1.48500 * 109.47315 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47176 * 299.99707 * 19 17 15 23 23 O 1.42898 * 109.47739 * 78.50608 * 3 2 1 24 24 C 1.42897 * 113.99966 * 284.43612 * 23 3 2 25 25 H 1.09010 * 109.46884 * 49.64180 * 1 2 3 26 26 H 1.08997 * 109.47594 * 169.63665 * 1 2 3 27 27 H 1.08998 * 109.47407 * 289.64807 * 1 2 3 28 28 H 1.09004 * 109.47012 * 318.49992 * 3 2 1 29 29 H 1.08999 * 109.47283 * 304.99262 * 4 3 2 30 30 H 1.08999 * 109.46808 * 184.99458 * 4 3 2 31 31 H 1.08996 * 109.47608 * 179.97438 * 7 5 4 32 32 H 1.08998 * 109.47282 * 300.00239 * 7 5 4 33 33 H 1.09008 * 109.46544 * 59.99756 * 7 5 4 34 34 H 1.07999 * 119.97297 * 0.03256 * 10 9 8 35 35 H 1.08000 * 119.70407 * 180.28070 * 11 10 9 36 36 H 1.07995 * 119.73126 * 179.71969 * 12 11 10 37 37 H 1.08001 * 120.03904 * 180.02562 * 13 12 11 38 38 H 0.96999 * 119.99597 * 180.02562 * 18 17 15 39 39 H 1.09001 * 109.47373 * 316.28395 * 24 23 3 40 40 H 1.09006 * 109.47014 * 76.28097 * 24 23 3 41 41 H 1.08996 * 109.47526 * 196.27833 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.4673 1.2147 -0.4580 5 6 3.5161 0.7499 -1.9148 6 1 2.9698 -0.1880 -2.0154 7 6 4.9723 0.5395 -2.3345 8 8 2.9178 1.7418 -2.7516 9 6 2.4304 1.3262 -3.9473 10 6 2.6248 0.0204 -4.3643 11 6 2.1214 -0.4000 -5.5820 12 6 1.4289 0.4804 -6.4021 13 6 1.2280 1.7744 -6.0172 14 6 1.7255 2.2243 -4.7801 15 6 1.5216 3.5608 -4.3743 16 1 2.2301 4.0388 -3.7142 17 6 0.4011 4.2663 -4.8273 18 7 -0.5769 3.6302 -5.4200 19 14 0.3017 6.1159 -4.5858 20 1 1.4410 6.7678 -5.2803 21 1 -0.9757 6.6209 -5.1501 22 1 0.3610 6.4298 -3.1356 23 8 1.9588 1.8498 1.3202 24 6 0.6617 2.3037 1.7116 25 1 -0.3633 0.6655 -0.7832 26 1 -0.3634 -1.0108 -0.1849 27 1 -0.3634 0.3455 0.9678 28 1 1.4549 1.9504 -0.6810 29 1 4.0017 0.5012 0.1692 30 1 3.9363 2.1951 -0.3735 31 1 5.0071 0.2079 -3.3722 32 1 5.5186 1.4773 -2.2339 33 1 5.4286 -0.2172 -1.6961 34 1 3.1660 -0.6717 -3.7362 35 1 2.2724 -1.4211 -5.8998 36 1 1.0457 0.1386 -7.3521 37 1 0.6877 2.4523 -6.6614 38 1 -1.3534 4.1194 -5.7343 39 1 0.2079 2.8588 0.8905 40 1 0.0362 1.4462 1.9598 41 1 0.7512 2.9524 2.5829 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230276519.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:20 Heat of formation + Delta-G solvation = -131.483506 kcal Electronic energy + Delta-G solvation = -22915.875910 eV Core-core repulsion = 19567.525875 eV Total energy + Delta-G solvation = -3348.350035 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.91381 -40.07051 -38.13116 -36.97864 -35.45436 -34.30565 -31.57883 -30.46049 -30.35300 -27.78902 -27.02363 -26.97637 -24.27774 -23.44353 -22.49680 -21.30737 -19.38997 -18.67326 -18.28980 -18.09355 -17.18230 -16.93652 -16.13694 -15.96245 -15.72722 -15.39380 -15.12332 -14.97164 -14.53941 -14.49749 -14.19955 -13.85507 -13.55917 -13.43494 -13.20219 -13.02293 -12.92600 -12.70061 -12.58318 -12.43809 -12.27860 -12.14227 -11.80341 -11.57887 -11.41737 -11.12544 -11.08728 -11.04860 -10.77175 -9.33257 -8.82491 -8.51367 -6.21712 0.95520 1.13036 1.36517 1.47299 1.50891 2.22664 2.45426 2.62293 2.78596 2.86980 3.70909 3.77096 3.89661 4.02353 4.06925 4.23182 4.30358 4.35094 4.40838 4.47918 4.52990 4.53701 4.62206 4.64546 4.71497 4.81975 4.86082 4.89319 5.03567 5.14613 5.23935 5.29618 5.47257 5.51096 5.90308 5.91805 5.93959 6.01706 6.18231 6.33615 6.55023 6.83851 6.95719 7.27174 8.41497 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.012431 B = 0.007064 C = 0.005470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.868680 B = 3962.667528 C = 5117.152374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.405 6.405 3 C 0.245 3.755 4 C -0.088 4.088 5 C 0.080 3.920 6 H 0.066 0.934 7 C -0.168 4.168 8 O -0.323 6.323 9 C 0.016 3.984 10 C -0.182 4.182 11 C -0.202 4.202 12 C -0.140 4.140 13 C -0.160 4.160 14 C 0.056 3.944 15 C -0.482 4.482 16 H 0.067 0.933 17 C 0.032 3.968 18 N -0.836 5.836 19 Si 0.975 3.025 20 H -0.262 1.262 21 H -0.267 1.267 22 H -0.264 1.264 23 O -0.407 6.407 24 C 0.012 3.988 25 H 0.029 0.971 26 H 0.102 0.898 27 H 0.068 0.932 28 H 0.043 0.957 29 H 0.115 0.885 30 H 0.095 0.905 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.285 0.715 39 H 0.039 0.961 40 H 0.061 0.939 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.776 -3.821 9.810 10.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.326 6.326 3 C 0.150 3.850 4 C -0.125 4.125 5 C 0.024 3.976 6 H 0.084 0.916 7 C -0.226 4.226 8 O -0.239 6.239 9 C -0.029 4.029 10 C -0.201 4.201 11 C -0.221 4.221 12 C -0.158 4.158 13 C -0.180 4.180 14 C 0.054 3.946 15 C -0.512 4.512 16 H 0.085 0.915 17 C -0.180 4.180 18 N -0.464 5.464 19 Si 0.797 3.203 20 H -0.186 1.186 21 H -0.191 1.191 22 H -0.188 1.188 23 O -0.328 6.328 24 C -0.083 4.083 25 H 0.048 0.952 26 H 0.120 0.880 27 H 0.086 0.914 28 H 0.060 0.940 29 H 0.133 0.867 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.114 0.886 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.095 0.905 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.812 -3.743 9.904 10.955 hybrid contribution -0.879 0.819 -0.351 1.252 sum 1.933 -2.924 9.553 10.176 Atomic orbital electron populations 1.23242 0.80084 1.03963 1.00930 1.87923 1.21153 1.29646 1.93881 1.23378 0.96268 0.82038 0.83325 1.21519 0.92592 1.04943 0.93469 1.22332 0.94806 0.91568 0.88917 0.91626 1.22284 0.94590 1.03336 1.02348 1.85948 1.73645 1.37058 1.27236 1.19324 1.03629 0.93177 0.86738 1.21007 1.05664 0.94654 0.98785 1.20614 1.05701 0.99517 0.96257 1.20671 1.01171 0.94190 0.99804 1.20869 1.04906 0.96161 0.96074 1.17445 0.92688 0.93368 0.91132 1.19438 1.07542 0.97204 1.27025 0.91500 1.26615 0.93903 1.04773 0.92725 1.69862 1.06152 1.39178 1.31206 0.85354 0.78621 0.76805 0.79533 1.18603 1.19077 1.18847 1.87928 1.31856 1.79254 1.33737 1.23274 0.84232 0.99690 1.01107 0.95196 0.87963 0.91383 0.93992 0.86686 0.88649 0.92677 0.91625 0.88616 0.85709 0.85990 0.87081 0.87588 0.90486 0.94245 0.92055 0.87424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.37 10.35 113.37 1.17 1.55 16 2 O -0.41 -13.42 10.05 -126.21 -1.27 -14.69 16 3 C 0.24 8.22 2.81 71.98 0.20 8.43 16 4 C -0.09 -2.67 5.00 30.59 0.15 -2.52 16 5 C 0.08 2.77 2.18 30.59 0.07 2.84 16 6 H 0.07 2.36 5.97 -2.39 -0.01 2.34 16 7 C -0.17 -4.77 9.14 71.98 0.66 -4.11 16 8 O -0.32 -14.70 8.59 -89.61 -0.77 -15.47 16 9 C 0.02 0.79 6.62 23.08 0.15 0.95 16 10 C -0.18 -8.05 8.19 22.34 0.18 -7.86 16 11 C -0.20 -8.73 10.04 22.43 0.23 -8.51 16 12 C -0.14 -6.56 9.97 22.00 0.22 -6.35 16 13 C -0.16 -8.60 8.61 22.47 0.19 -8.41 16 14 C 0.06 3.11 5.56 -21.20 -0.12 3.00 16 15 C -0.48 -27.01 8.70 23.40 0.20 -26.81 16 16 H 0.07 3.76 7.69 -2.91 -0.02 3.73 16 17 C 0.03 1.69 5.22 85.25 0.45 2.13 16 18 N -0.84 -44.77 10.90 21.83 0.24 -44.53 16 19 Si 0.98 39.87 29.58 68.60 2.03 41.90 16 20 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 21 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 22 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 23 O -0.41 -12.53 10.60 -126.21 -1.34 -13.87 16 24 C 0.01 0.30 10.11 113.37 1.15 1.45 16 25 H 0.03 0.94 7.88 -2.38 -0.02 0.92 16 26 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.07 1.58 5.05 -2.39 -0.01 1.56 16 28 H 0.04 1.68 7.01 -2.38 -0.02 1.66 16 29 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 30 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 31 H 0.05 1.69 6.75 -2.39 -0.02 1.68 16 32 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 34 H 0.13 4.74 5.38 -2.91 -0.02 4.73 16 35 H 0.12 4.42 8.06 -2.91 -0.02 4.39 16 36 H 0.11 4.56 8.06 -2.91 -0.02 4.54 16 37 H 0.11 5.94 6.24 -2.91 -0.02 5.92 16 38 H 0.28 13.87 8.30 -92.71 -0.77 13.10 16 39 H 0.04 1.01 7.78 -2.39 -0.02 0.99 16 40 H 0.06 1.31 5.46 -2.38 -0.01 1.29 16 41 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -64.03 332.00 4.82 -59.21 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: 1.02 Total: 31.69 kcal Atomic # 6 Polarization: -49.14 SS G_CDS: 4.90 Total: -44.23 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: 0.24 Total: -44.53 kcal Atomic # 8 Polarization: -40.66 SS G_CDS: -3.38 Total: -44.03 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.90 kcal Total: -64.03 4.82 -59.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276519.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.272 kcal (2) G-P(sol) polarization free energy of solvation -64.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds