Wall clock time and date at job start Tue Mar 31 2020 01:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00163 * 2 1 4 4 H 1.48500 * 109.47249 * 239.99785 * 3 2 1 5 5 H 1.48494 * 109.47303 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47005 * 120.00252 * 3 2 1 7 7 C 1.37882 * 119.99658 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00107 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00199 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47091 * 180.02562 * 9 7 2 11 11 C 1.46958 * 111.00035 * 170.00080 * 10 9 7 12 12 C 1.53050 * 109.36498 * 183.18656 * 11 10 9 13 13 N 1.46950 * 109.36385 * 301.59528 * 12 11 10 14 14 C 1.46900 * 111.00294 * 183.18954 * 13 12 11 15 15 C 1.50699 * 109.47734 * 170.00195 * 14 13 12 16 16 N 1.31782 * 119.09290 * 89.99460 * 15 14 13 17 17 C 1.32314 * 120.84620 * 180.02562 * 16 15 14 18 18 C 1.38825 * 119.07037 * 0.02562 * 17 16 15 19 19 F 1.35105 * 120.82081 * 179.72298 * 18 17 16 20 20 C 1.38818 * 118.34895 * 0.02562 * 18 17 16 21 21 N 1.31790 * 119.09110 * 270.02652 * 15 14 13 22 22 C 1.46958 * 110.88297 * 59.32068 * 13 12 11 23 23 C 1.46959 * 110.99798 * 293.79719 * 10 9 7 24 24 H 0.96998 * 119.99496 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47221 * 59.99594 * 9 7 2 26 26 H 1.09003 * 109.46539 * 300.00042 * 9 7 2 27 27 H 1.08999 * 109.49211 * 63.21571 * 11 10 9 28 28 H 1.09006 * 109.48862 * 303.15072 * 11 10 9 29 29 H 1.09003 * 109.48991 * 181.63124 * 12 11 10 30 30 H 1.09003 * 109.48896 * 61.56518 * 12 11 10 31 31 H 1.08999 * 109.47259 * 49.99816 * 14 13 12 32 32 H 1.09000 * 109.47249 * 290.00453 * 14 13 12 33 33 H 1.08001 * 120.46933 * 180.02562 * 17 16 15 34 34 H 1.08001 * 120.46184 * 180.02562 * 20 18 17 35 35 H 1.08999 * 109.48474 * 60.64307 * 22 13 12 36 36 H 1.08994 * 109.49366 * 180.70649 * 22 13 12 37 37 H 1.09003 * 109.48519 * 296.77927 * 23 10 9 38 38 H 1.08991 * 109.48961 * 56.82254 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 7 2.2055 -3.6158 -0.0015 11 6 1.5206 -4.8941 0.2357 12 6 2.5560 -6.0189 0.3076 13 7 3.3199 -6.0589 -0.9472 14 6 4.2745 -7.1755 -0.9471 15 6 4.8596 -7.3365 -2.3265 16 7 5.9581 -6.6784 -2.6374 17 6 6.5011 -6.7937 -3.8384 18 6 5.8970 -7.6212 -4.7752 19 9 6.4182 -7.7608 -6.0138 20 6 4.7406 -8.2966 -4.4097 21 7 4.2581 -8.1312 -3.1888 22 6 4.0049 -4.7806 -1.1844 23 6 2.9695 -3.6557 -1.2562 24 1 -0.4849 0.8401 -0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6240 -2.5574 0.8881 27 1 0.8256 -5.0913 -0.5805 28 1 0.9723 -4.8439 1.1765 29 1 2.0480 -6.9721 0.4545 30 1 3.2346 -5.8359 1.1408 31 1 3.7603 -8.0931 -0.6611 32 1 5.0739 -6.9701 -0.2351 33 1 7.4018 -6.2518 -4.0866 34 1 4.2428 -8.9494 -5.1114 35 1 4.6998 -4.5835 -0.3681 36 1 4.5532 -4.8308 -2.1250 37 1 2.2909 -3.8388 -2.0894 38 1 3.4772 -2.7026 -1.4034 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235007326.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:01 Heat of formation + Delta-G solvation = 25.111128 kcal Electronic energy + Delta-G solvation = -21499.689569 eV Core-core repulsion = 18099.255185 eV Total energy + Delta-G solvation = -3400.434385 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.40176 -41.34866 -38.67594 -35.32404 -34.20200 -32.75929 -31.84244 -30.40849 -28.66201 -26.45704 -25.30512 -24.37073 -23.16119 -22.36368 -21.32028 -19.20301 -18.58340 -17.94899 -17.03185 -16.56196 -16.29046 -15.88380 -14.97460 -14.75976 -14.53486 -14.38586 -14.15029 -14.11511 -13.61539 -13.53357 -13.14486 -12.90221 -12.17918 -12.00680 -11.85066 -11.65027 -11.28273 -11.16251 -10.86487 -10.72703 -10.63416 -10.39237 -10.28613 -9.73264 -9.57580 -9.55230 -9.17655 -8.42322 -8.22042 -7.21896 -6.01164 -4.02610 0.33034 0.59785 3.16538 3.34462 3.38380 3.41365 3.44515 3.55926 3.72649 4.20731 4.28654 4.32540 4.43610 4.93057 4.97928 5.09141 5.28818 5.34331 5.39214 5.47836 5.57447 5.77446 5.83023 5.93385 5.96467 6.08380 6.20333 6.43819 6.50736 6.59453 6.69859 7.11021 7.13900 7.34942 7.38446 7.68129 7.81250 8.10387 8.21980 8.56790 9.04663 9.61496 11.09731 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.022799 B = 0.003693 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.812992 B = 7580.184651 C = 8334.069018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.508 4.508 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.538 5.538 11 C 0.056 3.944 12 C 0.064 3.936 13 N -0.533 5.533 14 C 0.121 3.879 15 C 0.327 3.673 16 N -0.486 5.486 17 C 0.128 3.872 18 C -0.014 4.014 19 F -0.122 7.122 20 C 0.127 3.873 21 N -0.475 5.475 22 C 0.059 3.941 23 C 0.069 3.931 24 H 0.262 0.738 25 H -0.009 1.009 26 H 0.030 0.970 27 H 0.031 0.969 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.043 0.957 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.180 0.820 34 H 0.180 0.820 35 H 0.044 0.956 36 H 0.068 0.932 37 H 0.026 0.974 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.071 -17.689 -6.766 21.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.547 4.547 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.263 5.263 11 C -0.073 4.073 12 C -0.063 4.063 13 N -0.259 5.259 14 C -0.009 4.009 15 C 0.059 3.941 16 N -0.199 5.199 17 C -0.040 4.040 18 C -0.038 4.038 19 F -0.100 7.100 20 C -0.041 4.041 21 N -0.188 5.188 22 C -0.069 4.069 23 C -0.060 4.060 24 H 0.071 0.929 25 H 0.009 0.991 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.119 0.881 32 H 0.083 0.917 33 H 0.197 0.803 34 H 0.197 0.803 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.044 0.956 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.520 -17.452 -5.856 21.202 hybrid contribution 0.856 0.849 -1.324 1.790 sum 11.376 -16.603 -7.179 21.369 Atomic orbital electron populations 1.69953 1.06064 1.26864 1.50964 1.24987 0.94855 0.99282 0.95448 0.86563 0.79440 0.82781 0.78638 1.20301 1.21359 1.20160 1.21124 0.93422 0.89988 1.50141 0.91977 1.19694 0.90034 0.87271 0.96118 1.62297 1.28089 1.02778 1.33163 1.22068 0.94686 0.89871 1.00642 1.22176 0.96004 0.98981 0.89166 1.62130 1.24888 1.02951 1.35951 1.20766 0.95256 0.97040 0.87805 1.23206 0.87018 0.87291 0.96550 1.68373 1.11634 1.21454 1.18433 1.23479 0.99122 0.93579 0.87814 1.19599 0.97924 1.03271 0.83043 1.91553 1.85844 1.94527 1.38119 1.23498 0.90958 0.95702 0.93913 1.68326 1.31017 1.17674 1.01807 1.22302 0.95962 0.88091 1.00548 1.21985 0.95376 0.97410 0.91258 0.92879 0.99097 0.95168 0.95071 0.90741 0.90760 0.93836 0.88074 0.91738 0.80296 0.80340 0.93728 0.91353 0.95587 0.89537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.92 13.29 55.43 0.74 -26.19 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.51 -14.38 8.47 -34.44 -0.29 -14.68 16 8 H 0.06 1.73 7.13 -52.49 -0.37 1.36 16 9 C 0.19 5.13 4.72 -4.98 -0.02 5.10 16 10 N -0.54 -11.83 4.70 -235.91 -1.11 -12.93 16 11 C 0.06 1.03 5.61 -3.77 -0.02 1.01 16 12 C 0.06 0.95 5.61 -3.77 -0.02 0.93 16 13 N -0.53 -8.05 4.70 -235.92 -1.11 -9.15 16 14 C 0.12 1.48 5.40 -4.98 -0.03 1.45 16 15 C 0.33 4.11 6.43 -157.21 -1.01 3.10 16 16 N -0.49 -5.87 9.16 -10.68 -0.10 -5.97 16 17 C 0.13 1.23 11.30 -17.13 -0.19 1.04 16 18 C -0.01 -0.13 7.39 -39.15 -0.29 -0.42 16 19 F -0.12 -1.09 17.30 2.25 0.04 -1.05 16 20 C 0.13 1.21 11.30 -17.13 -0.19 1.02 16 21 N -0.48 -5.74 10.33 -10.68 -0.11 -5.85 16 22 C 0.06 0.98 5.38 -3.77 -0.02 0.96 16 23 C 0.07 1.39 5.43 -3.77 -0.02 1.37 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 26 H 0.03 0.85 8.03 -51.93 -0.42 0.43 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.07 1.31 8.07 -51.93 -0.42 0.89 16 29 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.10 1.08 8.03 -51.93 -0.42 0.66 16 32 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 33 H 0.18 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.18 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.11 6.38 -51.93 -0.33 0.78 16 37 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.09 1.88 6.79 -51.93 -0.35 1.53 16 LS Contribution 318.54 15.07 4.80 4.80 Total: -1.00 -31.59 318.54 -9.32 -40.91 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -5.24 Total: -3.69 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -2.21 Total: 2.38 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: -1.69 Total: -60.10 kcal Atomic # 9 Polarization: -1.09 SS G_CDS: 0.04 Total: -1.05 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.59 -9.32 -40.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235007326.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.025 kcal (2) G-P(sol) polarization free energy of solvation -31.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds