Wall clock time and date at job start Tue Mar 31 2020 01:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00163 * 2 1 4 4 H 1.48500 * 109.47249 * 239.99785 * 3 2 1 5 5 H 1.48494 * 109.47303 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47005 * 120.00252 * 3 2 1 7 7 C 1.37882 * 119.99658 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00107 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00199 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47091 * 180.02562 * 9 7 2 11 11 C 1.46958 * 111.00035 * 170.00080 * 10 9 7 12 12 C 1.53050 * 109.36498 * 183.18656 * 11 10 9 13 13 N 1.46950 * 109.36385 * 301.59528 * 12 11 10 14 14 C 1.46900 * 111.00294 * 183.18954 * 13 12 11 15 15 C 1.50699 * 109.47734 * 170.00195 * 14 13 12 16 16 N 1.31782 * 119.09290 * 89.99460 * 15 14 13 17 17 C 1.32314 * 120.84620 * 180.02562 * 16 15 14 18 18 C 1.38825 * 119.07037 * 0.02562 * 17 16 15 19 19 F 1.35105 * 120.82081 * 179.72298 * 18 17 16 20 20 C 1.38818 * 118.34895 * 0.02562 * 18 17 16 21 21 N 1.31790 * 119.09110 * 270.02652 * 15 14 13 22 22 C 1.46958 * 110.88297 * 59.32068 * 13 12 11 23 23 C 1.46959 * 110.99798 * 293.79719 * 10 9 7 24 24 H 0.96998 * 119.99496 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47221 * 59.99594 * 9 7 2 26 26 H 1.09003 * 109.46539 * 300.00042 * 9 7 2 27 27 H 1.08999 * 109.49211 * 63.21571 * 11 10 9 28 28 H 1.09006 * 109.48862 * 303.15072 * 11 10 9 29 29 H 1.09003 * 109.48991 * 181.63124 * 12 11 10 30 30 H 1.09003 * 109.48896 * 61.56518 * 12 11 10 31 31 H 1.08999 * 109.47259 * 49.99816 * 14 13 12 32 32 H 1.09000 * 109.47249 * 290.00453 * 14 13 12 33 33 H 1.08001 * 120.46933 * 180.02562 * 17 16 15 34 34 H 1.08001 * 120.46184 * 180.02562 * 20 18 17 35 35 H 1.08999 * 109.48474 * 60.64307 * 22 13 12 36 36 H 1.08994 * 109.49366 * 180.70649 * 22 13 12 37 37 H 1.09003 * 109.48519 * 296.77927 * 23 10 9 38 38 H 1.08991 * 109.48961 * 56.82254 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 7 2.2055 -3.6158 -0.0015 11 6 1.5206 -4.8941 0.2357 12 6 2.5560 -6.0189 0.3076 13 7 3.3199 -6.0589 -0.9472 14 6 4.2745 -7.1755 -0.9471 15 6 4.8596 -7.3365 -2.3265 16 7 5.9581 -6.6784 -2.6374 17 6 6.5011 -6.7937 -3.8384 18 6 5.8970 -7.6212 -4.7752 19 9 6.4182 -7.7608 -6.0138 20 6 4.7406 -8.2966 -4.4097 21 7 4.2581 -8.1312 -3.1888 22 6 4.0049 -4.7806 -1.1844 23 6 2.9695 -3.6557 -1.2562 24 1 -0.4849 0.8401 -0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6240 -2.5574 0.8881 27 1 0.8256 -5.0913 -0.5805 28 1 0.9723 -4.8439 1.1765 29 1 2.0480 -6.9721 0.4545 30 1 3.2346 -5.8359 1.1408 31 1 3.7603 -8.0931 -0.6611 32 1 5.0739 -6.9701 -0.2351 33 1 7.4018 -6.2518 -4.0866 34 1 4.2428 -8.9494 -5.1114 35 1 4.6998 -4.5835 -0.3681 36 1 4.5532 -4.8308 -2.1250 37 1 2.2909 -3.8388 -2.0894 38 1 3.4772 -2.7026 -1.4034 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235007326.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:01 Heat of formation + Delta-G solvation = 2.027156 kcal Electronic energy + Delta-G solvation = -21500.690566 eV Core-core repulsion = 18099.255185 eV Total energy + Delta-G solvation = -3401.435381 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.12185 -42.16150 -40.08609 -36.84635 -35.00098 -34.68150 -32.99055 -31.84468 -30.18884 -28.03371 -26.06937 -25.85037 -24.57694 -23.60846 -22.96009 -20.67210 -19.40245 -18.67837 -18.49730 -17.88006 -17.50590 -16.99974 -16.48726 -16.01383 -15.84480 -15.63275 -15.44629 -15.33459 -15.14686 -14.55546 -14.26581 -14.19716 -13.85388 -13.47745 -13.18029 -12.91705 -12.72194 -12.70554 -12.42525 -12.25688 -12.18461 -12.04876 -11.93902 -11.50838 -11.20940 -10.61937 -10.36100 -10.35993 -9.41495 -9.05654 -8.21208 -6.31839 -0.46212 -0.14842 1.40664 1.44124 1.52102 2.30176 2.39961 2.70508 2.74982 2.97876 3.10297 3.11574 3.28184 3.60544 3.64734 3.94872 4.04708 4.19644 4.28142 4.35038 4.45000 4.49649 4.60962 4.65358 4.68285 4.86347 4.95571 5.01341 5.02536 5.19813 5.22381 5.26713 5.62633 5.73160 5.92160 5.96518 6.04688 6.30910 6.60999 6.83527 6.86886 7.37932 8.89961 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.022799 B = 0.003693 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.812992 B = 7580.184651 C = 8334.069018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.970 3.030 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.526 4.526 8 H 0.062 0.938 9 C 0.209 3.791 10 N -0.542 5.542 11 C 0.053 3.947 12 C 0.074 3.926 13 N -0.544 5.544 14 C 0.125 3.875 15 C 0.310 3.690 16 N -0.505 5.505 17 C 0.125 3.875 18 C -0.008 4.008 19 F -0.118 7.118 20 C 0.125 3.875 21 N -0.494 5.494 22 C 0.078 3.922 23 C 0.072 3.928 24 H 0.265 0.735 25 H -0.043 1.043 26 H 0.007 0.993 27 H 0.019 0.981 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.049 0.951 31 H 0.120 0.880 32 H 0.073 0.927 33 H 0.207 0.793 34 H 0.208 0.792 35 H 0.044 0.956 36 H 0.074 0.926 37 H 0.008 0.992 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.815 -18.604 -7.115 23.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.196 4.196 3 Si 0.795 3.205 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.564 4.564 8 H 0.081 0.919 9 C 0.083 3.917 10 N -0.267 5.267 11 C -0.076 4.076 12 C -0.053 4.053 13 N -0.270 5.270 14 C -0.004 4.004 15 C 0.042 3.958 16 N -0.219 5.219 17 C -0.042 4.042 18 C -0.032 4.032 19 F -0.096 7.096 20 C -0.042 4.042 21 N -0.207 5.207 22 C -0.050 4.050 23 C -0.056 4.056 24 H 0.074 0.926 25 H -0.025 1.025 26 H 0.025 0.975 27 H 0.037 0.963 28 H 0.096 0.904 29 H 0.126 0.874 30 H 0.068 0.932 31 H 0.138 0.862 32 H 0.091 0.909 33 H 0.223 0.777 34 H 0.225 0.775 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.026 0.974 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 12.284 -18.400 -6.212 22.979 hybrid contribution 0.305 1.051 -1.299 1.698 sum 12.589 -17.349 -7.510 22.713 Atomic orbital electron populations 1.70086 1.07785 1.28022 1.51635 1.25931 0.95747 1.03243 0.94679 0.85422 0.78163 0.77802 0.79159 1.19293 1.20740 1.19154 1.21427 0.93583 0.91078 1.50325 0.91933 1.19349 0.90067 0.88988 0.93340 1.62237 1.27250 1.03277 1.33938 1.22203 0.95754 0.89368 1.00264 1.22120 0.95230 0.98725 0.89246 1.62053 1.25843 1.02870 1.36223 1.20806 0.95011 0.96295 0.88303 1.23225 0.87590 0.88085 0.96853 1.68374 1.11904 1.22001 1.19609 1.23936 0.99714 0.93438 0.87142 1.19582 0.97737 1.02867 0.83036 1.91569 1.85761 1.94449 1.37862 1.23980 0.90981 0.95641 0.93579 1.68332 1.31561 1.18147 1.02710 1.22010 0.94396 0.87755 1.00887 1.21929 0.95550 0.98291 0.89879 0.92631 1.02497 0.97480 0.96288 0.90369 0.87380 0.93250 0.86212 0.90920 0.77684 0.77519 0.93797 0.90744 0.97386 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.23 13.29 21.45 0.28 -56.95 16 2 C 0.00 0.12 5.46 84.66 0.46 0.58 16 3 Si 0.97 44.78 29.54 68.60 2.03 46.81 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.53 -30.51 8.47 25.60 0.22 -30.29 16 8 H 0.06 3.55 7.13 -2.91 -0.02 3.53 16 9 C 0.21 11.54 4.72 85.56 0.40 11.95 16 10 N -0.54 -24.42 4.70 -900.29 -4.23 -28.65 16 11 C 0.05 1.93 5.61 86.31 0.48 2.42 16 12 C 0.07 2.05 5.61 86.31 0.48 2.53 16 13 N -0.54 -15.56 4.70 -900.30 -4.23 -19.80 16 14 C 0.12 2.78 5.40 85.56 0.46 3.24 16 15 C 0.31 7.24 6.43 138.75 0.89 8.13 16 16 N -0.51 -11.33 9.16 -187.69 -1.72 -13.05 16 17 C 0.12 2.15 11.30 84.76 0.96 3.10 16 18 C -0.01 -0.13 7.39 22.55 0.17 0.04 16 19 F -0.12 -1.83 17.30 44.97 0.78 -1.05 16 20 C 0.13 2.11 11.30 84.76 0.96 3.07 16 21 N -0.49 -11.01 10.33 -187.70 -1.94 -12.94 16 22 C 0.08 2.55 5.38 86.31 0.46 3.01 16 23 C 0.07 3.01 5.43 86.31 0.47 3.48 16 24 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 25 H -0.04 -2.59 8.12 -2.39 -0.02 -2.61 16 26 H 0.01 0.42 8.03 -2.39 -0.02 0.40 16 27 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.08 2.77 8.07 -2.38 -0.02 2.75 16 29 H 0.11 2.31 8.07 -2.39 -0.02 2.29 16 30 H 0.05 1.33 8.14 -2.39 -0.02 1.32 16 31 H 0.12 2.20 8.03 -2.39 -0.02 2.18 16 32 H 0.07 1.51 8.12 -2.39 -0.02 1.49 16 33 H 0.21 2.20 8.06 -2.91 -0.02 2.17 16 34 H 0.21 2.06 8.06 -2.91 -0.02 2.04 16 35 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.07 2.36 6.38 -2.39 -0.02 2.34 16 37 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 38 H 0.07 2.99 6.79 -2.39 -0.02 2.98 16 Total: -1.00 -69.29 318.54 -1.56 -70.85 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: 1.06 Total: 3.53 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 6.42 Total: 11.26 kcal Atomic # 7 Polarization: -119.55 SS G_CDS: -11.84 Total: -131.39 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.78 Total: -1.05 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -69.29 -1.56 -70.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235007326.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.874 kcal (2) G-P(sol) polarization free energy of solvation -69.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds