Wall clock time and date at job start Tue Mar 31 2020 01:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35977 * 116.99907 * 2 1 4 4 C 1.38701 * 119.98190 * 359.97438 * 3 2 1 5 5 C 1.38227 * 120.09206 * 179.97438 * 4 3 2 6 6 C 1.38539 * 120.05261 * 359.97438 * 5 4 3 7 7 O 1.36067 * 120.02012 * 180.02562 * 6 5 4 8 8 C 1.42903 * 117.00177 * 0.02562 * 7 6 5 9 9 C 1.39134 * 119.96037 * 359.81299 * 6 5 4 10 10 O 1.35985 * 120.04481 * 180.23180 * 9 6 5 11 11 C 1.42905 * 117.00005 * 275.71086 * 10 9 6 12 12 C 1.38544 * 119.91027 * 0.41874 * 9 6 5 13 13 C 1.50705 * 120.02504 * 179.81170 * 12 9 6 14 14 C 1.53003 * 109.46944 * 93.82052 * 13 12 9 15 15 C 1.53000 * 109.46967 * 175.27851 * 14 13 12 16 16 C 1.50701 * 109.46915 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00123 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00101 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00414 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99765 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47086 * 90.00419 * 20 18 16 22 22 H 1.48501 * 109.47195 * 209.99925 * 20 18 16 23 23 H 1.48505 * 109.47323 * 330.00139 * 20 18 16 24 24 H 1.08999 * 109.47024 * 299.99786 * 1 2 3 25 25 H 1.08995 * 109.47397 * 59.99930 * 1 2 3 26 26 H 1.09001 * 109.46950 * 180.02562 * 1 2 3 27 27 H 1.08003 * 119.95593 * 359.97438 * 4 3 2 28 28 H 1.07997 * 119.97708 * 180.02562 * 5 4 3 29 29 H 1.09000 * 109.47358 * 180.02562 * 8 7 6 30 30 H 1.09003 * 109.46700 * 299.99862 * 8 7 6 31 31 H 1.08996 * 109.47409 * 59.99565 * 8 7 6 32 32 H 1.09005 * 109.47089 * 175.20630 * 11 10 9 33 33 H 1.08999 * 109.47106 * 295.20280 * 11 10 9 34 34 H 1.08993 * 109.47260 * 55.20416 * 11 10 9 35 35 H 1.09003 * 109.47187 * 333.82230 * 13 12 9 36 36 H 1.08997 * 109.47179 * 213.82092 * 13 12 9 37 37 H 1.09001 * 109.47172 * 55.28241 * 14 13 12 38 38 H 1.09001 * 109.47367 * 295.28152 * 14 13 12 39 39 H 1.08992 * 109.47498 * 300.00323 * 15 14 13 40 40 H 1.09005 * 109.46769 * 60.00682 * 15 14 13 41 41 H 0.96992 * 120.00114 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2905 2.3746 -0.0005 5 6 1.9156 3.6074 0.0000 6 6 3.2989 3.6839 0.0016 7 8 3.9136 4.8978 0.0027 8 6 3.0708 6.0518 0.0026 9 6 4.0592 2.5186 0.0066 10 8 5.4171 2.5917 0.0130 11 6 6.0641 2.7515 -1.2511 12 6 3.4310 1.2838 0.0012 13 6 4.2520 0.0200 0.0023 14 6 4.4427 -0.4629 1.4416 15 6 5.1743 -1.8067 1.4358 16 6 5.3627 -2.2821 2.8534 17 1 4.9968 -1.6857 3.6761 18 6 6.0021 -3.4784 3.1002 19 7 6.1661 -3.8936 4.3372 20 14 6.6356 -4.5096 1.6772 21 1 8.0318 -4.1137 1.3620 22 1 6.6014 -5.9459 2.0530 23 1 5.7775 -4.2891 0.4854 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.2120 2.3169 -0.0014 28 1 1.3253 4.5118 0.0000 29 1 3.6863 6.9513 0.0030 30 1 2.4422 6.0425 -0.8879 31 1 2.4408 6.0417 0.8920 32 1 7.1354 2.8809 -1.0972 33 1 5.8893 1.8667 -1.8632 34 1 5.6612 3.6288 -1.7572 35 1 5.2254 0.2187 -0.4462 36 1 3.7366 -0.7486 -0.5736 37 1 3.4691 -0.5814 1.9171 38 1 5.0309 0.2687 1.9955 39 1 4.5861 -2.5383 0.8820 40 1 6.1480 -1.6881 0.9604 41 1 6.6163 -4.7350 4.5108 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250063105.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:07 Heat of formation + Delta-G solvation = -95.232871 kcal Electronic energy + Delta-G solvation = -22273.754636 eV Core-core repulsion = 18926.976546 eV Total energy + Delta-G solvation = -3346.778089 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.78531 -39.05245 -38.12067 -35.94550 -34.56808 -32.42331 -30.52366 -29.63530 -27.76831 -27.29832 -26.89597 -26.23798 -23.41104 -21.92249 -21.06987 -19.89715 -18.36816 -17.58998 -17.27076 -16.53959 -16.23361 -16.05326 -15.54197 -15.03298 -14.89116 -14.77450 -14.23078 -13.87106 -13.63856 -13.08159 -12.88845 -12.84773 -12.53273 -12.27127 -11.94933 -11.85003 -11.60653 -11.56821 -11.39985 -10.99001 -10.81049 -10.58896 -10.38183 -9.96718 -9.75220 -9.53090 -9.50269 -9.05072 -8.49297 -8.41426 -7.66967 -5.92205 -3.88620 1.11399 1.41980 3.14537 3.26185 3.39651 3.45970 3.51451 3.53161 4.05455 4.56427 4.63099 4.79985 4.92730 4.97144 5.01933 5.11902 5.14620 5.28029 5.35349 5.38162 5.40080 5.42293 5.47357 5.61155 5.66226 5.77751 5.99118 6.12940 6.15290 6.21610 6.42723 6.56242 6.84408 6.88824 7.10371 7.12681 7.43621 7.51202 7.63739 7.70619 7.93701 8.68971 9.14271 9.71075 11.21683 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.018489 B = 0.004600 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.057607 B = 6085.289494 C = 6933.742302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.303 6.303 3 C 0.109 3.891 4 C -0.175 4.175 5 C -0.170 4.170 6 C 0.072 3.928 7 O -0.309 6.309 8 C 0.027 3.973 9 C 0.103 3.897 10 O -0.314 6.314 11 C 0.037 3.963 12 C -0.077 4.077 13 C -0.072 4.072 14 C -0.089 4.089 15 C -0.013 4.013 16 C -0.514 4.514 17 H 0.071 0.929 18 C 0.064 3.936 19 N -0.908 5.908 20 Si 0.879 3.121 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.265 1.265 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.100 0.900 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.097 0.903 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.093 0.907 33 H 0.046 0.954 34 H 0.044 0.956 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.015 0.985 40 H 0.010 0.990 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.869 17.872 -14.082 25.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.216 6.216 3 C 0.063 3.937 4 C -0.194 4.194 5 C -0.189 4.189 6 C 0.026 3.974 7 O -0.222 6.222 8 C -0.068 4.068 9 C 0.058 3.942 10 O -0.230 6.230 11 C -0.058 4.058 12 C -0.078 4.078 13 C -0.109 4.109 14 C -0.127 4.127 15 C -0.050 4.050 16 C -0.552 4.552 17 H 0.089 0.911 18 C -0.136 4.136 19 N -0.547 5.547 20 Si 0.707 3.293 21 H -0.204 1.204 22 H -0.216 1.216 23 H -0.190 1.190 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.118 0.882 27 H 0.149 0.851 28 H 0.149 0.851 29 H 0.116 0.884 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.112 0.888 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.033 0.967 40 H 0.028 0.972 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.384 17.568 -13.826 24.650 hybrid contribution -0.329 -0.221 -0.769 0.865 sum -10.712 17.348 -14.595 25.074 Atomic orbital electron populations 1.23040 0.78880 1.04013 1.00801 1.86193 1.20726 1.25944 1.88716 1.18509 0.91224 0.84483 0.99441 1.20988 0.99920 0.91504 1.07021 1.20782 0.92542 0.98362 1.07209 1.19275 0.91155 0.85158 1.01790 1.86160 1.34989 1.11826 1.89259 1.23023 0.95880 0.86885 1.01026 1.17456 0.83367 0.88613 1.04754 1.86140 1.14512 1.92945 1.29451 1.22971 0.97838 1.00048 0.84927 1.19529 0.91121 0.95515 1.01664 1.20562 0.97939 0.91900 1.00507 1.21374 1.00576 0.98461 0.92294 1.19576 0.94970 0.92734 0.97703 1.21191 1.36845 1.05445 0.91720 0.91124 1.25033 0.95681 0.97515 0.95401 1.69924 1.43825 1.22040 1.18951 0.86777 0.79645 0.79332 0.83540 1.20358 1.21551 1.18952 0.92794 0.93114 0.88162 0.85107 0.85094 0.88423 0.93044 0.92789 0.88840 0.93584 0.93735 0.91315 0.90861 0.92756 0.92614 0.96666 0.97156 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.30 -4.58 9.61 -19.67 -0.19 -4.76 16 3 C 0.11 1.66 6.66 -39.25 -0.26 1.40 16 4 C -0.18 -2.18 9.03 -39.41 -0.36 -2.53 16 5 C -0.17 -2.05 9.03 -39.47 -0.36 -2.40 16 6 C 0.07 1.03 6.70 -39.14 -0.26 0.76 16 7 O -0.31 -4.05 10.28 -34.54 -0.36 -4.41 16 8 C 0.03 0.22 9.81 101.05 0.99 1.21 16 9 C 0.10 1.69 5.71 -39.14 -0.22 1.47 16 10 O -0.31 -5.29 9.25 -34.28 -0.32 -5.60 16 11 C 0.04 0.46 10.90 101.05 1.10 1.56 16 12 C -0.08 -1.31 5.16 -104.35 -0.54 -1.85 16 13 C -0.07 -1.34 4.89 -27.88 -0.14 -1.47 16 14 C -0.09 -1.99 5.14 -26.73 -0.14 -2.13 16 15 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 16 C -0.51 -15.53 9.66 -34.44 -0.33 -15.86 16 17 H 0.07 2.30 7.99 -52.49 -0.42 1.88 16 18 C 0.06 1.95 5.47 -17.82 -0.10 1.85 16 19 N -0.91 -29.10 13.96 55.43 0.77 -28.33 16 20 Si 0.88 22.63 27.47 -169.99 -4.67 17.96 16 21 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.26 -6.55 6.54 56.52 0.37 -6.18 16 24 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 25 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 26 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.13 1.24 6.28 -52.48 -0.33 0.91 16 28 H 0.13 1.16 6.29 -52.49 -0.33 0.83 16 29 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 31 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.55 7.74 -51.93 -0.40 0.14 16 34 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 1.23 6.80 -51.93 -0.35 0.88 16 36 H 0.07 1.34 7.66 -51.93 -0.40 0.94 16 37 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 40 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 41 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 338.65 15.07 5.10 5.10 Total: -1.00 -35.30 338.65 -5.68 -40.98 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -6.29 Total: -3.78 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: 0.27 Total: -17.16 kcal Atomic # 7 Polarization: -29.10 SS G_CDS: 0.77 Total: -28.33 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -0.86 Total: -14.78 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.67 Total: 17.96 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.30 -5.68 -40.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250063105.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.256 kcal (2) G-P(sol) polarization free energy of solvation -35.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds