Wall clock time and date at job start Tue Mar 31 2020 01:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35977 * 116.99907 * 2 1 4 4 C 1.38701 * 119.98190 * 359.97438 * 3 2 1 5 5 C 1.38227 * 120.09206 * 179.97438 * 4 3 2 6 6 C 1.38539 * 120.05261 * 359.97438 * 5 4 3 7 7 O 1.36067 * 120.02012 * 180.02562 * 6 5 4 8 8 C 1.42903 * 117.00177 * 0.02562 * 7 6 5 9 9 C 1.39134 * 119.96037 * 359.81299 * 6 5 4 10 10 O 1.35985 * 120.04481 * 180.23180 * 9 6 5 11 11 C 1.42905 * 117.00005 * 275.71086 * 10 9 6 12 12 C 1.38544 * 119.91027 * 0.41874 * 9 6 5 13 13 C 1.50705 * 120.02504 * 179.81170 * 12 9 6 14 14 C 1.53003 * 109.46944 * 93.82052 * 13 12 9 15 15 C 1.53000 * 109.46967 * 175.27851 * 14 13 12 16 16 C 1.50701 * 109.46915 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00123 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00101 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00414 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99765 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47086 * 90.00419 * 20 18 16 22 22 H 1.48501 * 109.47195 * 209.99925 * 20 18 16 23 23 H 1.48505 * 109.47323 * 330.00139 * 20 18 16 24 24 H 1.08999 * 109.47024 * 299.99786 * 1 2 3 25 25 H 1.08995 * 109.47397 * 59.99930 * 1 2 3 26 26 H 1.09001 * 109.46950 * 180.02562 * 1 2 3 27 27 H 1.08003 * 119.95593 * 359.97438 * 4 3 2 28 28 H 1.07997 * 119.97708 * 180.02562 * 5 4 3 29 29 H 1.09000 * 109.47358 * 180.02562 * 8 7 6 30 30 H 1.09003 * 109.46700 * 299.99862 * 8 7 6 31 31 H 1.08996 * 109.47409 * 59.99565 * 8 7 6 32 32 H 1.09005 * 109.47089 * 175.20630 * 11 10 9 33 33 H 1.08999 * 109.47106 * 295.20280 * 11 10 9 34 34 H 1.08993 * 109.47260 * 55.20416 * 11 10 9 35 35 H 1.09003 * 109.47187 * 333.82230 * 13 12 9 36 36 H 1.08997 * 109.47179 * 213.82092 * 13 12 9 37 37 H 1.09001 * 109.47172 * 55.28241 * 14 13 12 38 38 H 1.09001 * 109.47367 * 295.28152 * 14 13 12 39 39 H 1.08992 * 109.47498 * 300.00323 * 15 14 13 40 40 H 1.09005 * 109.46769 * 60.00682 * 15 14 13 41 41 H 0.96992 * 120.00114 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2905 2.3746 -0.0005 5 6 1.9156 3.6074 0.0000 6 6 3.2989 3.6839 0.0016 7 8 3.9136 4.8978 0.0027 8 6 3.0708 6.0518 0.0026 9 6 4.0592 2.5186 0.0066 10 8 5.4171 2.5917 0.0130 11 6 6.0641 2.7515 -1.2511 12 6 3.4310 1.2838 0.0012 13 6 4.2520 0.0200 0.0023 14 6 4.4427 -0.4629 1.4416 15 6 5.1743 -1.8067 1.4358 16 6 5.3627 -2.2821 2.8534 17 1 4.9968 -1.6857 3.6761 18 6 6.0021 -3.4784 3.1002 19 7 6.1661 -3.8936 4.3372 20 14 6.6356 -4.5096 1.6772 21 1 8.0318 -4.1137 1.3620 22 1 6.6014 -5.9459 2.0530 23 1 5.7775 -4.2891 0.4854 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.2120 2.3169 -0.0014 28 1 1.3253 4.5118 0.0000 29 1 3.6863 6.9513 0.0030 30 1 2.4422 6.0425 -0.8879 31 1 2.4408 6.0417 0.8920 32 1 7.1354 2.8809 -1.0972 33 1 5.8893 1.8667 -1.8632 34 1 5.6612 3.6288 -1.7572 35 1 5.2254 0.2187 -0.4462 36 1 3.7366 -0.7486 -0.5736 37 1 3.4691 -0.5814 1.9171 38 1 5.0309 0.2687 1.9955 39 1 4.5861 -2.5383 0.8820 40 1 6.1480 -1.6881 0.9604 41 1 6.6163 -4.7350 4.5108 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250063105.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:06 Heat of formation + Delta-G solvation = -118.462492 kcal Electronic energy + Delta-G solvation = -22274.761948 eV Core-core repulsion = 18926.976546 eV Total energy + Delta-G solvation = -3347.785401 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.81803 -40.02968 -39.16004 -37.08029 -36.25678 -34.44954 -32.11912 -30.62315 -29.01420 -28.35064 -27.73750 -27.41975 -25.12802 -22.94007 -22.46925 -21.69281 -19.44108 -18.87251 -18.46615 -18.30314 -17.29762 -17.00890 -16.44164 -16.34264 -16.00797 -15.90010 -15.71213 -15.44175 -14.95220 -14.66945 -14.18875 -14.04770 -13.69342 -13.44664 -13.37311 -13.21611 -12.78899 -12.61144 -12.50522 -12.43456 -12.31834 -11.96884 -11.76775 -11.50172 -11.41427 -11.33226 -11.24165 -10.92631 -10.74936 -9.67279 -8.68952 -8.28128 -6.32351 0.06040 0.36979 1.36294 1.38845 1.51931 2.26712 2.31276 2.38286 2.54162 3.01876 3.06737 3.68322 3.87141 4.06103 4.16006 4.25036 4.36076 4.41061 4.42790 4.45147 4.45564 4.47237 4.48236 4.54624 4.72168 4.74364 4.76804 4.78659 4.93709 4.97666 5.11243 5.15726 5.18757 5.23486 5.44766 5.55605 5.66045 5.68423 6.19875 6.30787 6.46612 6.67286 6.74407 7.31743 8.89250 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.018489 B = 0.004600 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.057607 B = 6085.289494 C = 6933.742302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.097 3.903 4 C -0.168 4.168 5 C -0.156 4.156 6 C 0.062 3.938 7 O -0.330 6.330 8 C 0.016 3.984 9 C 0.083 3.917 10 O -0.344 6.344 11 C 0.033 3.967 12 C -0.111 4.111 13 C -0.057 4.057 14 C -0.077 4.077 15 C -0.007 4.007 16 C -0.534 4.534 17 H 0.025 0.975 18 C 0.003 3.997 19 N -0.953 5.953 20 Si 0.955 3.045 21 H -0.265 1.265 22 H -0.280 1.280 23 H -0.246 1.246 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.110 0.890 27 H 0.166 0.834 28 H 0.169 0.831 29 H 0.116 0.884 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.108 0.892 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.039 0.961 38 H 0.035 0.965 39 H 0.022 0.978 40 H 0.018 0.982 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.183 18.978 -16.488 27.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.052 3.948 4 C -0.186 4.186 5 C -0.174 4.174 6 C 0.017 3.983 7 O -0.244 6.244 8 C -0.078 4.078 9 C 0.039 3.961 10 O -0.261 6.261 11 C -0.061 4.061 12 C -0.112 4.112 13 C -0.094 4.094 14 C -0.115 4.115 15 C -0.044 4.044 16 C -0.572 4.572 17 H 0.043 0.957 18 C -0.194 4.194 19 N -0.594 5.594 20 Si 0.777 3.223 21 H -0.190 1.190 22 H -0.206 1.206 23 H -0.169 1.169 24 H 0.082 0.918 25 H 0.093 0.907 26 H 0.128 0.872 27 H 0.183 0.817 28 H 0.186 0.814 29 H 0.134 0.866 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.126 0.874 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.040 0.960 40 H 0.037 0.963 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.717 18.702 -16.240 27.400 hybrid contribution 0.000 -0.431 0.077 0.438 sum -11.717 18.271 -16.163 27.062 Atomic orbital electron populations 1.23353 0.76506 1.05374 1.02441 1.86142 1.23350 1.26397 1.88814 1.18682 0.90919 0.85574 0.99617 1.21358 1.01476 0.90507 1.05287 1.21218 0.91849 0.99688 1.04689 1.19357 0.91919 0.85207 1.01857 1.86132 1.36733 1.12402 1.89155 1.23370 0.96383 0.85660 1.02367 1.17695 0.83366 0.89465 1.05580 1.86069 1.15244 1.93208 1.31563 1.23144 0.98463 1.00630 0.83846 1.19436 0.92066 0.94822 1.04889 1.20264 0.98676 0.93202 0.97291 1.21152 0.98845 0.96428 0.95045 1.19505 0.95814 0.94358 0.94737 1.21497 1.37150 1.05593 0.92950 0.95674 1.26067 0.95656 0.98884 0.98747 1.70079 1.44778 1.22911 1.21669 0.85593 0.79607 0.77280 0.79794 1.18962 1.20579 1.16920 0.91777 0.90669 0.87175 0.81697 0.81382 0.86588 0.91117 0.91829 0.87385 0.93284 0.92742 0.91105 0.90739 0.94172 0.94584 0.96006 0.96324 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.43 16 2 O -0.33 -9.81 9.61 -93.30 -0.90 -10.70 16 3 C 0.10 2.89 6.66 22.48 0.15 3.04 16 4 C -0.17 -3.70 9.03 22.38 0.20 -3.50 16 5 C -0.16 -3.28 9.03 22.34 0.20 -3.08 16 6 C 0.06 1.70 6.70 22.56 0.15 1.85 16 7 O -0.33 -8.13 10.28 -80.36 -0.83 -8.96 16 8 C 0.02 0.22 9.81 113.37 1.11 1.33 16 9 C 0.08 2.75 5.71 22.56 0.13 2.88 16 10 O -0.34 -11.77 9.25 -79.43 -0.73 -12.50 16 11 C 0.03 0.82 10.90 113.37 1.24 2.05 16 12 C -0.11 -3.80 5.16 -19.69 -0.10 -3.90 16 13 C -0.06 -2.16 4.89 29.85 0.15 -2.01 16 14 C -0.08 -3.57 5.14 30.60 0.16 -3.41 16 15 C -0.01 -0.35 4.04 29.85 0.12 -0.23 16 16 C -0.53 -33.49 9.66 25.60 0.25 -33.24 16 17 H 0.02 1.74 7.99 -2.91 -0.02 1.71 16 18 C 0.00 0.17 5.47 84.65 0.46 0.63 16 19 N -0.95 -62.73 13.96 21.45 0.30 -62.43 16 20 Si 0.95 46.52 27.47 68.60 1.88 48.41 16 21 H -0.26 -12.32 7.11 99.48 0.71 -11.61 16 22 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 23 H -0.25 -11.15 6.54 99.48 0.65 -10.50 16 24 H 0.06 1.00 7.66 -2.39 -0.02 0.98 16 25 H 0.07 0.96 7.66 -2.39 -0.02 0.95 16 26 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.17 2.40 6.28 -2.91 -0.02 2.39 16 28 H 0.17 2.19 6.29 -2.91 -0.02 2.17 16 29 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 0.67 7.66 -2.39 -0.02 0.65 16 31 H 0.06 0.72 7.66 -2.39 -0.02 0.71 16 32 H 0.11 2.27 8.14 -2.38 -0.02 2.25 16 33 H 0.05 1.16 7.74 -2.39 -0.02 1.14 16 34 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.07 2.57 6.80 -2.39 -0.02 2.56 16 36 H 0.07 2.73 7.66 -2.39 -0.02 2.71 16 37 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.02 1.10 7.20 -2.39 -0.02 1.08 16 40 H 0.02 0.93 7.57 -2.38 -0.02 0.91 16 41 H 0.27 16.23 8.31 -92.71 -0.77 15.45 16 Total: -1.00 -79.70 338.65 6.01 -73.69 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 0.96 Total: 8.66 kcal Atomic # 6 Polarization: -41.49 SS G_CDS: 5.33 Total: -36.17 kcal Atomic # 7 Polarization: -62.73 SS G_CDS: 0.30 Total: -62.43 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -2.46 Total: -32.17 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 1.88 Total: 48.41 kcal Total: -79.70 6.01 -73.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250063105.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.772 kcal (2) G-P(sol) polarization free energy of solvation -79.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds