Wall clock time and date at job start Tue Mar 31 2020 01:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35994 * 116.99734 * 2 1 4 4 C 1.38685 * 120.04748 * 359.97438 * 3 2 1 5 5 C 1.38211 * 120.09257 * 180.02562 * 4 3 2 6 6 C 1.38247 * 120.17929 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.96157 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47450 * 264.97736 * 7 6 5 9 9 C 1.52997 * 109.47398 * 179.97438 * 8 7 6 10 10 C 1.50695 * 109.47096 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00185 * 359.97438 * 10 9 8 12 12 C 1.37884 * 120.00061 * 180.02562 * 10 9 8 13 13 N 1.31511 * 119.99580 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99798 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47356 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.46926 * 120.00163 * 14 12 10 17 17 H 1.48505 * 109.46723 * 239.99651 * 14 12 10 18 18 C 1.38653 * 120.08988 * 359.97008 * 6 5 4 19 19 O 1.35994 * 120.04893 * 180.02562 * 18 6 5 20 20 C 1.42905 * 116.99704 * 86.29892 * 19 18 6 21 21 C 1.38962 * 120.04790 * 180.25573 * 3 2 1 22 22 O 1.36103 * 120.08593 * 0.02562 * 21 3 2 23 23 C 1.42894 * 117.00011 * 274.90469 * 22 21 3 24 24 H 1.08999 * 109.46848 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47110 * 300.00363 * 1 2 3 26 26 H 1.08993 * 109.47132 * 60.00619 * 1 2 3 27 27 H 1.08001 * 119.95818 * 359.97438 * 4 3 2 28 28 H 1.07994 * 119.91321 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.46858 * 24.97464 * 7 6 5 30 30 H 1.09001 * 109.47462 * 144.97318 * 7 6 5 31 31 H 1.09002 * 109.46868 * 299.99722 * 8 7 6 32 32 H 1.09006 * 109.46669 * 59.99452 * 8 7 6 33 33 H 1.09002 * 109.47234 * 299.99926 * 9 8 7 34 34 H 1.09001 * 109.47139 * 59.99812 * 9 8 7 35 35 H 0.97001 * 119.99529 * 179.97438 * 13 12 10 36 36 H 1.08998 * 109.47104 * 294.17787 * 20 19 18 37 37 H 1.09002 * 109.46856 * 54.16908 * 20 19 18 38 38 H 1.08994 * 109.47352 * 174.17191 * 20 19 18 39 39 H 1.09004 * 109.47152 * 294.46413 * 23 22 21 40 40 H 1.09008 * 109.47053 * 54.46469 * 23 22 21 41 41 H 1.08997 * 109.47445 * 174.46352 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2919 2.3754 -0.0005 5 6 1.9184 3.6074 -0.0011 6 6 3.2987 3.6853 -0.0016 7 6 3.9766 5.0311 -0.0028 8 6 4.3183 5.4289 -1.4401 9 6 5.0060 6.7956 -1.4413 10 6 5.3420 7.1876 -2.8571 11 1 5.0906 6.5277 -3.6742 12 6 5.9714 8.3882 -3.1091 13 7 6.2779 9.1915 -2.1140 14 14 6.3885 8.8737 -4.8641 15 1 5.9422 7.8045 -5.7929 16 1 5.6990 10.1444 -5.2033 17 1 7.8566 9.0581 -4.9909 18 6 4.0602 2.5266 -0.0010 19 8 5.4180 2.6041 -0.0010 20 6 6.0609 2.7238 1.2696 21 6 3.4340 1.2857 -0.0054 22 8 4.1780 0.1460 -0.0112 23 6 4.4465 -0.4598 1.2548 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 0.2134 2.3190 -0.0014 28 1 1.3281 4.5118 -0.0019 29 1 3.3081 5.7750 0.4309 30 1 4.8918 4.9775 0.5868 31 1 4.9868 4.6850 -1.8737 32 1 3.4030 5.4825 -2.0296 33 1 4.3373 7.5392 -1.0078 34 1 5.9212 6.7424 -0.8517 35 1 6.7210 10.0360 -2.2913 36 1 5.7959 3.6793 1.7223 37 1 5.7356 1.9114 1.9194 38 1 7.1414 2.6721 1.1364 39 1 5.0752 0.2034 1.8490 40 1 3.5075 -0.6369 1.7794 41 1 4.9616 -1.4082 1.1019 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065243.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:14 Heat of formation + Delta-G solvation = -98.513748 kcal Electronic energy + Delta-G solvation = -22144.819613 eV Core-core repulsion = 18797.899255 eV Total energy + Delta-G solvation = -3346.920359 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.80423 -38.89749 -37.72160 -36.55758 -34.31370 -32.31272 -30.25175 -29.79187 -28.00121 -27.00703 -26.58915 -26.08058 -23.47271 -22.20723 -21.20136 -19.98691 -18.59463 -17.32547 -17.18978 -16.34774 -16.21370 -16.01669 -15.37694 -14.94307 -14.89683 -14.61086 -14.41176 -14.05133 -13.78327 -13.37240 -12.85514 -12.66149 -12.45791 -12.21603 -11.91191 -11.78638 -11.56940 -11.24975 -11.08607 -10.96901 -10.74353 -10.43752 -10.43092 -10.18355 -9.78809 -9.52531 -9.24618 -9.00575 -8.60218 -8.28227 -7.95663 -5.93663 -3.94836 1.05942 1.29761 2.99932 3.35333 3.35765 3.42985 3.48554 3.73050 4.01679 4.52382 4.73864 4.88222 4.93628 4.99241 5.05790 5.13952 5.25206 5.26956 5.32867 5.34002 5.40441 5.42421 5.43808 5.54483 5.74177 5.86637 6.09696 6.14130 6.22648 6.31254 6.48421 6.60292 6.88541 6.98711 7.04069 7.24450 7.33720 7.76124 7.77927 7.91628 8.07710 8.51811 9.12601 9.68813 11.17815 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.023402 B = 0.003794 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.196936 B = 7378.946075 C = 7900.802446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.309 6.309 3 C 0.105 3.895 4 C -0.200 4.200 5 C -0.072 4.072 6 C -0.107 4.107 7 C -0.076 4.076 8 C -0.101 4.101 9 C 0.022 3.978 10 C -0.516 4.516 11 H 0.055 0.945 12 C 0.055 3.945 13 N -0.898 5.898 14 Si 0.890 3.110 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.284 1.284 18 C 0.120 3.880 19 O -0.315 6.315 20 C 0.033 3.967 21 C 0.045 3.955 22 O -0.314 6.314 23 C 0.034 3.966 24 H 0.098 0.902 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.133 0.867 28 H 0.135 0.865 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.046 0.954 33 H 0.014 0.986 34 H 0.015 0.985 35 H 0.259 0.741 36 H 0.052 0.948 37 H 0.040 0.960 38 H 0.096 0.904 39 H 0.042 0.958 40 H 0.044 0.956 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.920 -18.204 10.605 23.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.223 6.223 3 C 0.059 3.941 4 C -0.218 4.218 5 C -0.090 4.090 6 C -0.108 4.108 7 C -0.113 4.113 8 C -0.139 4.139 9 C -0.015 4.015 10 C -0.554 4.554 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.718 3.282 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.210 1.210 18 C 0.075 3.925 19 O -0.231 6.231 20 C -0.060 4.060 21 C 0.000 4.000 22 O -0.230 6.230 23 C -0.061 4.061 24 H 0.117 0.883 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.151 0.849 28 H 0.152 0.848 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.032 0.968 34 H 0.034 0.966 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.115 0.885 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.551 -18.339 10.338 23.117 hybrid contribution -0.162 0.540 -0.542 0.782 sum -9.713 -17.800 9.796 22.520 Atomic orbital electron populations 1.23066 0.78636 1.03789 1.01407 1.86125 1.21045 1.26243 1.88863 1.19153 0.91042 0.84905 0.98973 1.21149 0.99987 0.91739 1.08973 1.20846 0.93522 0.97267 0.97368 1.20422 0.93534 0.95881 1.00955 1.20683 0.99470 0.90565 1.00555 1.21610 1.00059 1.00139 0.92077 1.19108 0.95324 0.90142 0.96941 1.21324 1.37695 1.03243 0.93139 0.92660 1.25021 0.95956 0.96622 0.96932 1.69977 1.42122 1.10974 1.30674 0.86562 0.78029 0.78374 0.85223 1.19713 1.21087 1.21048 1.18480 0.83889 0.90142 0.99981 1.86138 1.14614 1.93450 1.28935 1.23081 0.98239 1.00343 0.84387 1.18179 0.86525 0.86355 1.08961 1.86168 1.70639 1.37276 1.28946 1.23029 0.99945 0.97832 0.85269 0.88343 0.92755 0.92499 0.84940 0.84755 0.91391 0.91376 0.92762 0.93503 0.96751 0.96631 0.93182 0.92957 0.94155 0.88527 0.93999 0.93695 0.89035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.88 10.28 -34.31 -0.35 -4.23 16 3 C 0.10 1.47 6.70 -39.15 -0.26 1.21 16 4 C -0.20 -2.47 9.04 -39.43 -0.36 -2.82 16 5 C -0.07 -0.98 9.67 -39.59 -0.38 -1.36 16 6 C -0.11 -1.72 5.15 -104.47 -0.54 -2.26 16 7 C -0.08 -1.34 5.06 -27.88 -0.14 -1.48 16 8 C -0.10 -2.21 5.13 -26.73 -0.14 -2.35 16 9 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 10 C -0.52 -15.10 9.11 -34.44 -0.31 -15.42 16 11 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 14 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 15 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 17 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 18 C 0.12 1.99 5.71 -39.15 -0.22 1.76 16 19 O -0.32 -5.38 9.54 -34.29 -0.33 -5.70 16 20 C 0.03 0.43 10.80 101.05 1.09 1.52 16 21 C 0.04 0.71 5.75 -39.03 -0.22 0.48 16 22 O -0.31 -4.88 9.99 -45.32 -0.45 -5.34 16 23 C 0.03 0.37 11.13 101.05 1.13 1.50 16 24 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 26 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 27 H 0.13 1.23 6.29 -52.49 -0.33 0.90 16 28 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 29 H 0.07 1.12 8.05 -51.93 -0.42 0.70 16 30 H 0.07 1.20 5.96 -51.93 -0.31 0.89 16 31 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.05 0.65 6.70 -51.93 -0.35 0.30 16 37 H 0.04 0.44 6.00 -51.93 -0.31 0.13 16 38 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.04 0.42 6.00 -51.93 -0.31 0.11 16 40 H 0.04 0.46 8.14 -51.92 -0.42 0.04 16 41 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 341.02 15.07 5.14 5.14 Total: -1.00 -34.13 341.02 -6.06 -40.18 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: -6.17 Total: -4.48 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: 0.39 Total: -16.06 kcal Atomic # 7 Polarization: -27.45 SS G_CDS: 0.74 Total: -26.71 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -1.13 Total: -15.27 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.13 -6.06 -40.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065243.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.332 kcal (2) G-P(sol) polarization free energy of solvation -34.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds