Wall clock time and date at job start Tue Mar 31 2020 01:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35994 * 116.99734 * 2 1 4 4 C 1.38685 * 120.04748 * 359.97438 * 3 2 1 5 5 C 1.38211 * 120.09257 * 180.02562 * 4 3 2 6 6 C 1.38247 * 120.17929 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.96157 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47450 * 264.97736 * 7 6 5 9 9 C 1.52997 * 109.47398 * 179.97438 * 8 7 6 10 10 C 1.50695 * 109.47096 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00185 * 359.97438 * 10 9 8 12 12 C 1.37884 * 120.00061 * 180.02562 * 10 9 8 13 13 N 1.31511 * 119.99580 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99798 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47356 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.46926 * 120.00163 * 14 12 10 17 17 H 1.48505 * 109.46723 * 239.99651 * 14 12 10 18 18 C 1.38653 * 120.08988 * 359.97008 * 6 5 4 19 19 O 1.35994 * 120.04893 * 180.02562 * 18 6 5 20 20 C 1.42905 * 116.99704 * 86.29892 * 19 18 6 21 21 C 1.38962 * 120.04790 * 180.25573 * 3 2 1 22 22 O 1.36103 * 120.08593 * 0.02562 * 21 3 2 23 23 C 1.42894 * 117.00011 * 274.90469 * 22 21 3 24 24 H 1.08999 * 109.46848 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47110 * 300.00363 * 1 2 3 26 26 H 1.08993 * 109.47132 * 60.00619 * 1 2 3 27 27 H 1.08001 * 119.95818 * 359.97438 * 4 3 2 28 28 H 1.07994 * 119.91321 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.46858 * 24.97464 * 7 6 5 30 30 H 1.09001 * 109.47462 * 144.97318 * 7 6 5 31 31 H 1.09002 * 109.46868 * 299.99722 * 8 7 6 32 32 H 1.09006 * 109.46669 * 59.99452 * 8 7 6 33 33 H 1.09002 * 109.47234 * 299.99926 * 9 8 7 34 34 H 1.09001 * 109.47139 * 59.99812 * 9 8 7 35 35 H 0.97001 * 119.99529 * 179.97438 * 13 12 10 36 36 H 1.08998 * 109.47104 * 294.17787 * 20 19 18 37 37 H 1.09002 * 109.46856 * 54.16908 * 20 19 18 38 38 H 1.08994 * 109.47352 * 174.17191 * 20 19 18 39 39 H 1.09004 * 109.47152 * 294.46413 * 23 22 21 40 40 H 1.09008 * 109.47053 * 54.46469 * 23 22 21 41 41 H 1.08997 * 109.47445 * 174.46352 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2919 2.3754 -0.0005 5 6 1.9184 3.6074 -0.0011 6 6 3.2987 3.6853 -0.0016 7 6 3.9766 5.0311 -0.0028 8 6 4.3183 5.4289 -1.4401 9 6 5.0060 6.7956 -1.4413 10 6 5.3420 7.1876 -2.8571 11 1 5.0906 6.5277 -3.6742 12 6 5.9714 8.3882 -3.1091 13 7 6.2779 9.1915 -2.1140 14 14 6.3885 8.8737 -4.8641 15 1 5.9422 7.8045 -5.7929 16 1 5.6990 10.1444 -5.2033 17 1 7.8566 9.0581 -4.9909 18 6 4.0602 2.5266 -0.0010 19 8 5.4180 2.6041 -0.0010 20 6 6.0609 2.7238 1.2696 21 6 3.4340 1.2857 -0.0054 22 8 4.1780 0.1460 -0.0112 23 6 4.4465 -0.4598 1.2548 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 0.2134 2.3190 -0.0014 28 1 1.3281 4.5118 -0.0019 29 1 3.3081 5.7750 0.4309 30 1 4.8918 4.9775 0.5868 31 1 4.9868 4.6850 -1.8737 32 1 3.4030 5.4825 -2.0296 33 1 4.3373 7.5392 -1.0078 34 1 5.9212 6.7424 -0.8517 35 1 6.7210 10.0360 -2.2913 36 1 5.7959 3.6793 1.7223 37 1 5.7356 1.9114 1.9194 38 1 7.1414 2.6721 1.1364 39 1 5.0752 0.2034 1.8490 40 1 3.5075 -0.6369 1.7794 41 1 4.9616 -1.4082 1.1019 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065243.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:13 Heat of formation + Delta-G solvation = -119.275790 kcal Electronic energy + Delta-G solvation = -22145.719923 eV Core-core repulsion = 18797.899255 eV Total energy + Delta-G solvation = -3347.820669 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.85620 -39.90184 -38.79390 -37.68341 -36.12191 -34.23035 -31.44889 -31.13971 -29.05489 -28.00986 -27.62537 -27.44067 -25.20648 -23.27160 -22.61756 -21.67742 -19.59183 -18.53133 -18.40392 -18.11701 -17.35554 -17.03143 -16.53551 -16.31320 -15.94623 -15.82734 -15.72637 -15.30240 -15.16257 -14.51397 -14.33377 -14.07518 -13.69894 -13.38077 -13.21752 -13.05684 -12.79824 -12.66079 -12.53490 -12.51191 -12.30782 -12.01466 -11.72057 -11.52025 -11.33304 -11.17466 -11.11034 -10.75281 -10.54070 -9.67673 -9.06527 -8.18962 -6.29488 0.00566 0.20497 1.39408 1.40091 1.53804 2.12280 2.32325 2.42232 2.70594 2.96537 3.13607 3.81805 3.91151 4.03046 4.11247 4.21166 4.32927 4.35029 4.40334 4.42579 4.42807 4.49153 4.52034 4.56665 4.65804 4.74857 4.81140 4.83547 4.97085 5.09428 5.15117 5.25343 5.27850 5.44730 5.49923 5.55704 5.80085 5.88137 6.06618 6.28531 6.34134 6.71036 6.86652 7.39201 8.92798 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.023402 B = 0.003794 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.196936 B = 7378.946075 C = 7900.802446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.325 6.325 3 C 0.107 3.893 4 C -0.190 4.190 5 C -0.068 4.068 6 C -0.129 4.129 7 C -0.064 4.064 8 C -0.086 4.086 9 C 0.027 3.973 10 C -0.543 4.543 11 H 0.053 0.947 12 C 0.001 3.999 13 N -0.932 5.932 14 Si 0.963 3.037 15 H -0.266 1.266 16 H -0.274 1.274 17 H -0.277 1.277 18 C 0.104 3.896 19 O -0.345 6.345 20 C 0.028 3.972 21 C 0.024 3.976 22 O -0.338 6.338 23 C 0.029 3.971 24 H 0.120 0.880 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.169 0.831 28 H 0.155 0.845 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.036 0.964 32 H 0.049 0.951 33 H -0.002 1.002 34 H -0.010 1.010 35 H 0.264 0.736 36 H 0.050 0.950 37 H 0.058 0.942 38 H 0.108 0.892 39 H 0.047 0.953 40 H 0.051 0.949 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.597 -19.129 10.373 24.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.239 6.239 3 C 0.061 3.939 4 C -0.208 4.208 5 C -0.086 4.086 6 C -0.130 4.130 7 C -0.101 4.101 8 C -0.123 4.123 9 C -0.010 4.010 10 C -0.581 4.581 11 H 0.072 0.928 12 C -0.197 4.197 13 N -0.572 5.572 14 Si 0.787 3.213 15 H -0.190 1.190 16 H -0.199 1.199 17 H -0.203 1.203 18 C 0.060 3.940 19 O -0.262 6.262 20 C -0.065 4.065 21 C -0.020 4.020 22 O -0.255 6.255 23 C -0.064 4.064 24 H 0.138 0.862 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.186 0.814 28 H 0.173 0.827 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.016 0.984 34 H 0.009 0.991 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.127 0.873 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.241 -19.281 10.120 24.506 hybrid contribution 0.317 0.728 -0.411 0.894 sum -10.924 -18.553 9.709 23.618 Atomic orbital electron populations 1.23434 0.76079 1.05789 1.02635 1.86116 1.23665 1.25612 1.88470 1.19264 0.90668 0.86046 0.97916 1.21469 1.01627 0.90471 1.07269 1.21107 0.92586 0.98774 0.96152 1.20277 0.94634 0.94478 1.03638 1.20443 0.99873 0.92316 0.97456 1.21349 0.99050 0.96789 0.95133 1.18999 0.94241 0.92379 0.95362 1.21724 1.38361 1.03797 0.94260 0.92844 1.25945 0.95544 0.96474 1.01695 1.70093 1.42555 1.11469 1.33085 0.85430 0.78016 0.78308 0.79500 1.18998 1.19949 1.20276 1.18682 0.83719 0.90842 1.00747 1.86070 1.15384 1.93674 1.31070 1.23263 0.98764 1.00985 0.83486 1.18354 0.87579 0.86156 1.09947 1.86106 1.70955 1.37289 1.31187 1.23232 1.00617 0.98540 0.84058 0.86182 0.91001 0.91642 0.81368 0.82712 0.90208 0.91947 0.94526 0.93259 0.98363 0.99112 0.92733 0.93099 0.92374 0.87326 0.93436 0.93063 0.87051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.81 113.37 1.11 1.29 16 2 O -0.32 -7.43 10.28 -79.53 -0.82 -8.25 16 3 C 0.11 2.82 6.70 22.55 0.15 2.97 16 4 C -0.19 -4.18 9.04 22.37 0.20 -3.97 16 5 C -0.07 -1.73 9.67 22.27 0.22 -1.52 16 6 C -0.13 -4.12 5.15 -19.76 -0.10 -4.22 16 7 C -0.06 -2.29 5.06 29.85 0.15 -2.14 16 8 C -0.09 -3.83 5.13 30.59 0.16 -3.68 16 9 C 0.03 1.50 4.97 29.85 0.15 1.64 16 10 C -0.54 -32.46 9.11 25.60 0.23 -32.23 16 11 H 0.05 3.13 7.74 -2.91 -0.02 3.11 16 12 C 0.00 0.06 5.46 84.66 0.46 0.52 16 13 N -0.93 -57.74 13.29 21.45 0.28 -57.45 16 14 Si 0.96 45.70 29.54 68.60 2.03 47.73 16 15 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 16 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 18 C 0.10 3.49 5.71 22.55 0.13 3.62 16 19 O -0.34 -12.11 9.54 -79.55 -0.76 -12.86 16 20 C 0.03 0.73 10.80 113.37 1.22 1.96 16 21 C 0.02 0.76 5.75 22.63 0.13 0.89 16 22 O -0.34 -10.44 9.99 -70.57 -0.70 -11.15 16 23 C 0.03 0.62 11.13 113.37 1.26 1.88 16 24 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.07 0.64 7.66 -2.39 -0.02 0.63 16 26 H 0.06 0.71 7.66 -2.39 -0.02 0.69 16 27 H 0.17 2.40 6.29 -2.91 -0.02 2.38 16 28 H 0.16 3.22 8.06 -2.91 -0.02 3.19 16 29 H 0.08 2.62 8.05 -2.39 -0.02 2.60 16 30 H 0.06 2.27 5.96 -2.39 -0.01 2.26 16 31 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 33 H 0.00 -0.12 8.14 -2.39 -0.02 -0.13 16 34 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 35 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 36 H 0.05 1.30 6.70 -2.39 -0.02 1.28 16 37 H 0.06 1.26 6.00 -2.39 -0.01 1.24 16 38 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.05 0.93 6.00 -2.39 -0.01 0.91 16 40 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -74.81 341.02 6.52 -68.29 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 1.02 Total: 6.67 kcal Atomic # 6 Polarization: -38.45 SS G_CDS: 5.48 Total: -32.97 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: 0.28 Total: -57.45 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -2.28 Total: -32.26 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -74.81 6.52 -68.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065243.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.987 kcal (2) G-P(sol) polarization free energy of solvation -74.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds