Wall clock time and date at job start Tue Mar 31 2020 02:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00160 * 2 1 4 4 H 1.48499 * 109.47126 * 269.99997 * 3 2 1 5 5 H 1.48495 * 109.46793 * 29.99838 * 3 2 1 6 6 H 1.48495 * 109.47311 * 150.00186 * 3 2 1 7 7 C 1.37877 * 120.00289 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99740 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00719 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47723 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47406 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47361 * 179.97438 * 11 10 9 13 13 C 1.38238 * 119.99728 * 90.00097 * 12 11 10 14 14 C 1.38235 * 120.00108 * 180.02562 * 13 12 11 15 15 C 1.38243 * 119.99617 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99586 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.47001 * 89.99822 * 16 15 14 18 18 C 1.38225 * 119.99955 * 269.72491 * 17 16 15 19 19 C 1.38244 * 119.99976 * 179.76892 * 18 17 16 20 20 C 1.38237 * 119.99487 * 0.48157 * 19 18 17 21 21 C 1.38231 * 120.00297 * 359.79402 * 20 19 18 22 22 C 1.38234 * 119.99996 * 359.95006 * 21 20 19 23 23 C 1.38233 * 120.00248 * 0.25361 * 15 14 13 24 24 C 1.38234 * 120.00209 * 270.02503 * 12 11 10 25 25 H 0.96999 * 120.00028 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47239 * 59.99291 * 9 7 2 27 27 H 1.09009 * 109.47121 * 300.00208 * 9 7 2 28 28 H 1.09000 * 109.46925 * 60.00034 * 10 9 7 29 29 H 1.09005 * 109.46936 * 299.99717 * 10 9 7 30 30 H 1.09003 * 109.46838 * 59.99631 * 11 10 9 31 31 H 1.08997 * 109.46950 * 300.00037 * 11 10 9 32 32 H 1.08000 * 120.00578 * 359.97438 * 13 12 11 33 33 H 1.07999 * 120.00165 * 179.97438 * 14 13 12 34 34 H 1.09000 * 109.46646 * 209.99280 * 16 15 14 35 35 H 1.09000 * 109.47248 * 329.99998 * 16 15 14 36 36 H 1.07995 * 120.00468 * 359.97438 * 18 17 16 37 37 H 1.08000 * 120.00058 * 180.25129 * 19 18 17 38 38 H 1.08000 * 119.99738 * 179.76989 * 20 19 18 39 39 H 1.08003 * 119.99968 * 179.97438 * 21 20 19 40 40 H 1.08003 * 120.00112 * 179.97438 * 22 21 20 41 41 H 1.08004 * 119.99934 * 179.72684 * 23 15 14 42 42 H 1.07999 * 120.00005 * 359.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5515 -2.6366 0.0001 12 6 6.0539 -4.0574 0.0009 13 6 6.2843 -4.7096 -1.1960 14 6 6.7446 -6.0130 -1.1954 15 6 6.9740 -6.6645 0.0022 16 6 7.4753 -8.0857 0.0028 17 6 8.9823 -8.0868 0.0035 18 6 9.6739 -8.0934 -1.1933 19 6 11.0563 -8.0896 -1.1927 20 6 11.7469 -8.0892 0.0048 21 6 11.0553 -8.0884 1.2016 22 6 9.6729 -8.0868 1.2010 23 6 6.7380 -6.0142 1.1990 24 6 6.2837 -4.7086 1.1984 25 1 -0.4850 0.8400 -0.0004 26 1 3.8752 -0.6796 0.8894 27 1 3.8746 -0.6808 -0.8906 28 1 3.6579 -3.1506 -0.8897 29 1 3.6586 -3.1502 0.8904 30 1 5.9148 -2.1226 0.8901 31 1 5.9148 -2.1229 -0.8899 32 1 6.1040 -4.2011 -2.1316 33 1 6.9243 -6.5227 -2.1304 34 1 7.1112 -8.5989 0.8929 35 1 7.1119 -8.5995 -0.8871 36 1 9.1344 -8.0982 -2.1288 37 1 11.5967 -8.0907 -2.1278 38 1 12.8269 -8.0900 0.0052 39 1 11.5949 -8.0885 2.1371 40 1 9.1325 -8.0866 2.1361 41 1 6.9130 -6.5247 2.1346 42 1 6.1037 -4.1990 2.1334 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065951.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:37 Heat of formation + Delta-G solvation = 17.137236 kcal Electronic energy + Delta-G solvation = -19804.268137 eV Core-core repulsion = 16905.504795 eV Total energy + Delta-G solvation = -2898.763342 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.152 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.91181 -38.91369 -35.32784 -33.61485 -32.18375 -31.17332 -30.74331 -30.39912 -27.96761 -25.67629 -23.12658 -23.03848 -22.32452 -21.54243 -20.45740 -19.96226 -17.05554 -16.71788 -15.96164 -15.72231 -15.40877 -15.00403 -14.97094 -14.16680 -13.81507 -13.77798 -13.66065 -13.23370 -13.22911 -12.99833 -12.49118 -12.40027 -12.26680 -11.88737 -11.54451 -11.38431 -11.20030 -11.17272 -10.90615 -10.82633 -10.62872 -9.87996 -9.68060 -9.61395 -9.15942 -9.15358 -8.94565 -8.77486 -8.51176 -8.25410 -6.01581 -3.99231 1.08600 1.17052 1.52088 1.55138 3.32358 3.39577 3.43687 3.54812 3.88460 4.47567 4.56575 4.66164 4.76803 4.86726 4.89563 4.89708 5.11223 5.11471 5.18887 5.28338 5.32393 5.40289 5.55170 5.63937 5.64405 5.77107 5.78187 5.85336 5.97195 6.05712 6.18664 6.22590 6.27724 6.35738 6.37250 6.52057 6.53471 6.68293 6.74482 6.77238 6.91798 6.94871 7.16484 7.35658 7.47811 7.82957 8.57733 9.03936 9.61133 11.12036 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.039092 B = 0.002562 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.080716 B =10925.924874 C =11032.255317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.094 4.094 11 C -0.088 4.088 12 C -0.066 4.066 13 C -0.117 4.117 14 C -0.112 4.112 15 C -0.094 4.094 16 C -0.040 4.040 17 C -0.071 4.071 18 C -0.115 4.115 19 C -0.119 4.119 20 C -0.128 4.128 21 C -0.119 4.119 22 C -0.115 4.115 23 C -0.112 4.112 24 C -0.117 4.117 25 H 0.262 0.738 26 H 0.015 0.985 27 H 0.011 0.989 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.116 0.884 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.841 -17.845 0.033 28.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.137 4.137 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.052 4.052 10 C -0.132 4.132 11 C -0.125 4.125 12 C -0.066 4.066 13 C -0.135 4.135 14 C -0.130 4.130 15 C -0.094 4.094 16 C -0.077 4.077 17 C -0.071 4.071 18 C -0.133 4.133 19 C -0.137 4.137 20 C -0.146 4.146 21 C -0.137 4.137 22 C -0.133 4.133 23 C -0.130 4.130 24 C -0.135 4.135 25 H 0.072 0.928 26 H 0.033 0.967 27 H 0.029 0.971 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.139 0.861 33 H 0.134 0.866 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.134 0.866 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 22.679 -17.728 0.036 28.786 hybrid contribution 0.334 0.981 -0.025 1.037 sum 23.013 -16.746 0.012 28.461 Atomic orbital electron populations 1.69921 1.06307 1.26817 1.51396 1.25052 0.94742 0.99199 0.94659 0.86762 0.80364 0.83593 0.78470 1.20338 1.21440 1.18993 1.21172 0.89621 0.94421 1.50494 0.91104 1.19602 0.97069 0.92385 0.96170 1.21438 0.90742 0.99698 1.01313 1.20827 0.98170 0.91201 1.02346 1.20140 0.96570 0.97005 0.92920 1.21057 0.99798 0.94733 0.97912 1.20923 1.00067 0.94916 0.97110 1.19555 1.00948 0.95342 0.93512 1.19569 0.90760 0.93785 1.03623 1.19818 0.95161 0.98804 0.93290 1.21051 0.94238 1.00393 0.97623 1.21140 0.94330 1.00177 0.98066 1.21132 0.99789 1.00982 0.92697 1.21136 0.94325 1.00181 0.98073 1.21053 0.94244 1.00381 0.97621 1.20923 1.00080 0.94892 0.97115 1.21057 0.99830 0.94704 0.97907 0.92798 0.96663 0.97112 0.92755 0.92737 0.91479 0.91483 0.86100 0.86594 0.90148 0.90148 0.86150 0.86195 0.86319 0.86195 0.86148 0.86591 0.86099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.38 13.96 55.43 0.77 -27.61 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.52 -15.13 9.66 -34.44 -0.33 -15.46 16 8 H 0.07 2.22 7.99 -52.48 -0.42 1.80 16 9 C -0.01 -0.36 4.04 -27.89 -0.11 -0.48 16 10 C -0.09 -1.91 5.13 -26.73 -0.14 -2.04 16 11 C -0.09 -1.45 5.34 -27.89 -0.15 -1.60 16 12 C -0.07 -1.00 5.13 -104.63 -0.54 -1.53 16 13 C -0.12 -1.62 9.70 -39.58 -0.38 -2.00 16 14 C -0.11 -1.37 9.70 -39.58 -0.38 -1.75 16 15 C -0.09 -1.08 5.12 -104.62 -0.54 -1.62 16 16 C -0.04 -0.37 5.48 -29.03 -0.16 -0.53 16 17 C -0.07 -0.67 5.12 -104.62 -0.54 -1.21 16 18 C -0.12 -1.05 9.70 -39.58 -0.38 -1.43 16 19 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 20 C -0.13 -1.06 10.05 -39.58 -0.40 -1.45 16 21 C -0.12 -1.01 10.05 -39.59 -0.40 -1.41 16 22 C -0.11 -1.05 9.70 -39.58 -0.38 -1.43 16 23 C -0.11 -1.37 9.70 -39.58 -0.38 -1.75 16 24 C -0.12 -1.62 9.70 -39.58 -0.38 -2.01 16 25 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 26 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 27 H 0.01 0.25 7.57 -51.92 -0.39 -0.14 16 28 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.07 1.06 8.09 -51.93 -0.42 0.64 16 31 H 0.07 1.06 8.09 -51.93 -0.42 0.64 16 32 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 33 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.08 0.65 8.03 -51.93 -0.42 0.23 16 35 H 0.08 0.65 8.03 -51.93 -0.42 0.23 16 36 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 38 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 39 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 40 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 41 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 42 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 353.12 15.07 5.32 5.32 Total: -1.00 -32.10 353.12 -11.35 -43.44 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -6.68 Total: -1.23 kcal Atomic # 6 Polarization: -31.21 SS G_CDS: -6.09 Total: -37.30 kcal Atomic # 7 Polarization: -28.38 SS G_CDS: 0.77 Total: -27.61 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.10 -11.35 -43.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065951.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.580 kcal (2) G-P(sol) polarization free energy of solvation -32.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds