Wall clock time and date at job start Tue Mar 31 2020 02:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00160 * 2 1 4 4 H 1.48499 * 109.47126 * 269.99997 * 3 2 1 5 5 H 1.48495 * 109.46793 * 29.99838 * 3 2 1 6 6 H 1.48495 * 109.47311 * 150.00186 * 3 2 1 7 7 C 1.37877 * 120.00289 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99740 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00719 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47723 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47406 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47361 * 179.97438 * 11 10 9 13 13 C 1.38238 * 119.99728 * 90.00097 * 12 11 10 14 14 C 1.38235 * 120.00108 * 180.02562 * 13 12 11 15 15 C 1.38243 * 119.99617 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99586 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.47001 * 89.99822 * 16 15 14 18 18 C 1.38225 * 119.99955 * 269.72491 * 17 16 15 19 19 C 1.38244 * 119.99976 * 179.76892 * 18 17 16 20 20 C 1.38237 * 119.99487 * 0.48157 * 19 18 17 21 21 C 1.38231 * 120.00297 * 359.79402 * 20 19 18 22 22 C 1.38234 * 119.99996 * 359.95006 * 21 20 19 23 23 C 1.38233 * 120.00248 * 0.25361 * 15 14 13 24 24 C 1.38234 * 120.00209 * 270.02503 * 12 11 10 25 25 H 0.96999 * 120.00028 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47239 * 59.99291 * 9 7 2 27 27 H 1.09009 * 109.47121 * 300.00208 * 9 7 2 28 28 H 1.09000 * 109.46925 * 60.00034 * 10 9 7 29 29 H 1.09005 * 109.46936 * 299.99717 * 10 9 7 30 30 H 1.09003 * 109.46838 * 59.99631 * 11 10 9 31 31 H 1.08997 * 109.46950 * 300.00037 * 11 10 9 32 32 H 1.08000 * 120.00578 * 359.97438 * 13 12 11 33 33 H 1.07999 * 120.00165 * 179.97438 * 14 13 12 34 34 H 1.09000 * 109.46646 * 209.99280 * 16 15 14 35 35 H 1.09000 * 109.47248 * 329.99998 * 16 15 14 36 36 H 1.07995 * 120.00468 * 359.97438 * 18 17 16 37 37 H 1.08000 * 120.00058 * 180.25129 * 19 18 17 38 38 H 1.08000 * 119.99738 * 179.76989 * 20 19 18 39 39 H 1.08003 * 119.99968 * 179.97438 * 21 20 19 40 40 H 1.08003 * 120.00112 * 179.97438 * 22 21 20 41 41 H 1.08004 * 119.99934 * 179.72684 * 23 15 14 42 42 H 1.07999 * 120.00005 * 359.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5515 -2.6366 0.0001 12 6 6.0539 -4.0574 0.0009 13 6 6.2843 -4.7096 -1.1960 14 6 6.7446 -6.0130 -1.1954 15 6 6.9740 -6.6645 0.0022 16 6 7.4753 -8.0857 0.0028 17 6 8.9823 -8.0868 0.0035 18 6 9.6739 -8.0934 -1.1933 19 6 11.0563 -8.0896 -1.1927 20 6 11.7469 -8.0892 0.0048 21 6 11.0553 -8.0884 1.2016 22 6 9.6729 -8.0868 1.2010 23 6 6.7380 -6.0142 1.1990 24 6 6.2837 -4.7086 1.1984 25 1 -0.4850 0.8400 -0.0004 26 1 3.8752 -0.6796 0.8894 27 1 3.8746 -0.6808 -0.8906 28 1 3.6579 -3.1506 -0.8897 29 1 3.6586 -3.1502 0.8904 30 1 5.9148 -2.1226 0.8901 31 1 5.9148 -2.1229 -0.8899 32 1 6.1040 -4.2011 -2.1316 33 1 6.9243 -6.5227 -2.1304 34 1 7.1112 -8.5989 0.8929 35 1 7.1119 -8.5995 -0.8871 36 1 9.1344 -8.0982 -2.1288 37 1 11.5967 -8.0907 -2.1278 38 1 12.8269 -8.0900 0.0052 39 1 11.5949 -8.0885 2.1371 40 1 9.1325 -8.0866 2.1361 41 1 6.9130 -6.5247 2.1346 42 1 6.1037 -4.1990 2.1334 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065951.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:37 Heat of formation + Delta-G solvation = 3.281331 kcal Electronic energy + Delta-G solvation = -19804.868974 eV Core-core repulsion = 16905.504795 eV Total energy + Delta-G solvation = -2899.364179 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.152 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.72520 -39.71636 -36.72152 -35.06969 -33.82863 -31.88702 -31.68061 -31.60878 -29.28147 -26.92554 -24.61182 -23.82557 -23.12913 -22.47801 -21.85857 -21.24175 -18.90360 -17.67453 -16.97843 -16.68545 -16.32876 -16.05903 -15.85411 -15.84514 -15.23797 -14.91860 -14.49819 -14.31025 -14.15410 -14.13347 -14.02290 -13.35753 -13.33903 -13.24497 -12.89218 -12.57877 -12.45933 -12.39672 -11.87382 -11.82534 -11.76476 -11.73407 -11.41580 -11.34546 -11.29595 -10.76762 -9.79091 -9.74854 -9.62028 -9.28213 -8.29831 -6.34285 0.35377 0.53599 0.57341 0.61209 1.35816 1.37997 1.50525 2.36379 2.83748 2.96260 3.05304 3.87884 3.92059 4.01781 4.05880 4.12366 4.17126 4.24075 4.26410 4.34043 4.45269 4.48301 4.63874 4.69682 4.71408 4.72488 4.86520 4.90850 4.96677 5.07205 5.10784 5.12975 5.20769 5.25287 5.28202 5.53367 5.57235 5.57838 5.61790 5.64330 5.66992 5.67396 5.82734 5.85162 6.14565 6.20476 6.29055 6.73772 7.30288 8.87265 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.039092 B = 0.002562 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.080716 B =10925.924874 C =11032.255317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.244 1.244 7 C -0.535 4.535 8 H 0.027 0.973 9 C -0.012 4.012 10 C -0.085 4.085 11 C -0.076 4.076 12 C -0.091 4.091 13 C -0.129 4.129 14 C -0.117 4.117 15 C -0.088 4.088 16 C -0.036 4.036 17 C -0.084 4.084 18 C -0.128 4.128 19 C -0.129 4.129 20 C -0.136 4.136 21 C -0.129 4.129 22 C -0.128 4.128 23 C -0.117 4.117 24 C -0.130 4.130 25 H 0.266 0.734 26 H 0.022 0.978 27 H 0.020 0.980 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.125 0.875 33 H 0.137 0.863 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.130 0.870 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.130 0.870 41 H 0.137 0.863 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.528 -17.998 0.012 31.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.196 4.196 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.168 1.168 7 C -0.573 4.573 8 H 0.045 0.955 9 C -0.050 4.050 10 C -0.123 4.123 11 C -0.113 4.113 12 C -0.091 4.091 13 C -0.147 4.147 14 C -0.135 4.135 15 C -0.088 4.088 16 C -0.073 4.073 17 C -0.084 4.084 18 C -0.146 4.146 19 C -0.147 4.147 20 C -0.154 4.154 21 C -0.147 4.147 22 C -0.146 4.146 23 C -0.135 4.135 24 C -0.147 4.147 25 H 0.075 0.925 26 H 0.040 0.960 27 H 0.039 0.961 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.143 0.857 33 H 0.155 0.845 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.148 0.852 37 H 0.154 0.846 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.148 0.852 41 H 0.155 0.845 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 25.381 -17.901 0.015 31.059 hybrid contribution -0.523 0.881 -0.019 1.025 sum 24.858 -17.020 -0.004 30.127 Atomic orbital electron populations 1.70082 1.08397 1.28203 1.52752 1.26099 0.95694 1.03780 0.94065 0.85584 0.79506 0.77820 0.79295 1.19042 1.20927 1.16778 1.21537 0.92390 0.92974 1.50381 0.95470 1.19565 0.93658 0.95112 0.96633 1.21265 0.93832 0.96905 1.00268 1.20633 0.94857 0.92820 1.03040 1.20069 0.98580 0.96462 0.93948 1.21226 1.00142 0.95620 0.97747 1.21209 0.99452 0.94417 0.98430 1.19880 0.99463 0.96438 0.93067 1.19587 0.90718 0.92247 1.04786 1.19906 0.95220 0.99593 0.93675 1.21289 0.94783 1.00509 0.98030 1.21434 0.94402 0.99882 0.99018 1.21453 1.00932 1.00391 0.92622 1.21429 0.94394 0.99887 0.99027 1.21291 0.94792 1.00507 0.98027 1.21208 0.99471 0.94391 0.98438 1.21225 1.00185 0.95599 0.97741 0.92489 0.96013 0.96138 0.93838 0.93865 0.90808 0.90731 0.85713 0.84485 0.89042 0.89037 0.85180 0.84565 0.84505 0.84570 0.85191 0.84487 0.85739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.29 13.96 21.45 0.30 -60.99 16 2 C 0.00 -0.01 5.47 84.66 0.46 0.46 16 3 Si 0.96 45.03 27.47 68.60 1.88 46.91 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.24 -10.62 6.54 99.48 0.65 -9.97 16 7 C -0.53 -31.98 9.66 25.60 0.25 -31.73 16 8 H 0.03 1.79 7.99 -2.91 -0.02 1.77 16 9 C -0.01 -0.59 4.04 29.85 0.12 -0.47 16 10 C -0.08 -3.46 5.13 30.59 0.16 -3.30 16 11 C -0.08 -2.44 5.34 29.85 0.16 -2.28 16 12 C -0.09 -2.66 5.13 -19.87 -0.10 -2.76 16 13 C -0.13 -3.46 9.70 22.27 0.22 -3.25 16 14 C -0.12 -2.67 9.70 22.27 0.22 -2.45 16 15 C -0.09 -1.89 5.12 -19.86 -0.10 -1.99 16 16 C -0.04 -0.58 5.48 29.10 0.16 -0.42 16 17 C -0.08 -1.44 5.12 -19.87 -0.10 -1.54 16 18 C -0.13 -2.10 9.70 22.27 0.22 -1.88 16 19 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 20 C -0.14 -1.98 10.05 22.27 0.22 -1.76 16 21 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 22 C -0.13 -2.10 9.70 22.27 0.22 -1.89 16 23 C -0.12 -2.67 9.70 22.27 0.22 -2.45 16 24 C -0.13 -3.47 9.70 22.27 0.22 -3.26 16 25 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 26 H 0.02 1.01 7.20 -2.39 -0.02 0.99 16 27 H 0.02 0.94 7.57 -2.38 -0.02 0.92 16 28 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.04 1.81 8.14 -2.38 -0.02 1.80 16 30 H 0.07 2.23 8.09 -2.39 -0.02 2.21 16 31 H 0.07 2.24 8.09 -2.39 -0.02 2.22 16 32 H 0.12 3.12 8.06 -2.91 -0.02 3.10 16 33 H 0.14 2.45 8.06 -2.91 -0.02 2.42 16 34 H 0.09 1.26 8.03 -2.39 -0.02 1.24 16 35 H 0.09 1.26 8.03 -2.39 -0.02 1.24 16 36 H 0.13 1.75 8.06 -2.91 -0.02 1.73 16 37 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 38 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 39 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 40 H 0.13 1.76 8.06 -2.91 -0.02 1.74 16 41 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 42 H 0.12 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -70.04 353.12 6.06 -63.98 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.91 Total: 14.53 kcal Atomic # 6 Polarization: -67.40 SS G_CDS: 2.97 Total: -64.43 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: 0.30 Total: -60.99 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.88 Total: 46.91 kcal Total: -70.04 6.06 -63.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065951.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.258 kcal (2) G-P(sol) polarization free energy of solvation -70.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds