Wall clock time and date at job start Tue Mar 31 2020 02:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99904 * 2 1 4 4 H 1.48503 * 109.46927 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47349 * 299.99628 * 3 2 1 6 6 H 1.48499 * 109.46975 * 59.99692 * 3 2 1 7 7 C 1.37875 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99849 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00096 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47170 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47144 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47116 * 179.97438 * 11 10 9 13 13 C 1.38260 * 120.00118 * 266.04911 * 12 11 10 14 14 C 1.38210 * 119.99714 * 179.97438 * 13 12 11 15 15 C 1.38259 * 120.00674 * 359.97438 * 14 13 12 16 16 C 1.38212 * 119.99294 * 359.74769 * 15 14 13 17 17 C 1.38215 * 120.00137 * 86.02906 * 12 11 10 18 18 C 1.50701 * 119.99596 * 0.02562 * 17 12 11 19 19 C 1.50699 * 109.47014 * 185.91134 * 18 17 12 20 20 C 1.38229 * 120.00474 * 85.28779 * 19 18 17 21 21 C 1.38237 * 119.99999 * 179.97438 * 20 19 18 22 22 C 1.38233 * 120.00169 * 359.97253 * 21 20 19 23 23 C 1.38233 * 119.99655 * 0.28439 * 22 21 20 24 24 C 1.38236 * 120.00437 * 359.50473 * 23 22 21 25 25 H 0.96999 * 120.00090 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47053 * 60.00200 * 9 7 2 27 27 H 1.09002 * 109.47304 * 300.00562 * 9 7 2 28 28 H 1.08998 * 109.47334 * 59.99926 * 10 9 7 29 29 H 1.09004 * 109.46596 * 300.00112 * 10 9 7 30 30 H 1.08998 * 109.47406 * 59.99553 * 11 10 9 31 31 H 1.09002 * 109.46976 * 299.99899 * 11 10 9 32 32 H 1.08000 * 119.99812 * 359.97438 * 13 12 11 33 33 H 1.08003 * 119.99670 * 179.97438 * 14 13 12 34 34 H 1.07991 * 120.00290 * 179.97438 * 15 14 13 35 35 H 1.08008 * 119.99998 * 180.27026 * 16 15 14 36 36 H 1.08995 * 109.47431 * 65.90607 * 18 17 12 37 37 H 1.09004 * 109.47181 * 305.90454 * 18 17 12 38 38 H 1.08000 * 120.00210 * 359.97438 * 20 19 18 39 39 H 1.08005 * 119.99743 * 179.97438 * 21 20 19 40 40 H 1.08005 * 119.99991 * 179.97438 * 22 21 20 41 41 H 1.08005 * 119.99682 * 179.72634 * 23 22 21 42 42 H 1.07995 * 120.00360 * 180.27716 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4803 -4.9871 0.0033 12 6 2.4596 -6.1325 0.0037 13 6 2.8461 -6.7120 -1.1906 14 6 3.7446 -7.7622 -1.1902 15 6 4.2575 -8.2329 0.0043 16 6 3.8755 -7.6498 1.1978 17 6 2.9718 -6.6035 1.1979 18 6 2.5504 -5.9719 2.4997 19 6 3.3536 -6.5644 3.6287 20 6 4.5969 -6.0459 3.9390 21 6 5.3334 -6.5892 4.9750 22 6 4.8264 -7.6506 5.7011 23 6 3.5855 -8.1725 5.3874 24 6 2.8470 -7.6265 4.3542 25 1 -0.4850 0.8400 -0.0004 26 1 0.6241 -2.5575 -0.8880 27 1 0.6246 -2.5563 0.8919 28 1 2.8720 -3.6035 0.8926 29 1 2.8719 -3.6050 -0.8873 30 1 0.8539 -5.0454 -0.8868 31 1 0.8534 -5.0443 0.8931 32 1 2.4458 -6.3441 -2.1238 33 1 4.0462 -8.2151 -2.1231 34 1 4.9592 -9.0537 0.0046 35 1 4.2794 -8.0145 2.1307 36 1 1.4905 -6.1614 2.6692 37 1 2.7246 -4.8968 2.4551 38 1 4.9928 -5.2163 3.3720 39 1 6.3050 -6.1843 5.2171 40 1 5.4021 -8.0753 6.5103 41 1 3.1913 -9.0047 5.9518 42 1 1.8755 -8.0314 4.1120 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066045.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:40 Heat of formation + Delta-G solvation = 17.252833 kcal Electronic energy + Delta-G solvation = -20585.393449 eV Core-core repulsion = 17686.635120 eV Total energy + Delta-G solvation = -2898.758329 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.152 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.00729 -38.71523 -34.81535 -33.78201 -32.59867 -30.92621 -30.28620 -30.08439 -26.96119 -26.16341 -23.55855 -22.59776 -22.42198 -20.97795 -20.42146 -19.89505 -16.86078 -16.45902 -16.01620 -15.61143 -15.23986 -14.92307 -14.54512 -14.37699 -13.66664 -13.54076 -13.44882 -13.26484 -12.98316 -12.80427 -12.31823 -12.22151 -12.02115 -11.65286 -11.45441 -11.15354 -11.03668 -10.95407 -10.82408 -10.62721 -10.58197 -10.38608 -9.63213 -9.32943 -9.07928 -8.97770 -8.71906 -8.54584 -8.33189 -8.23798 -5.98187 -4.00195 1.30978 1.35269 1.56422 1.62321 3.31943 3.39496 3.43845 3.73717 3.96825 4.47808 4.71950 4.83657 4.93148 5.02995 5.06670 5.14518 5.21681 5.25284 5.37723 5.41303 5.47670 5.58031 5.69444 5.71575 5.85540 5.93100 6.00190 6.02772 6.12111 6.16050 6.28857 6.40521 6.45794 6.49704 6.60322 6.64826 6.69410 6.74267 6.92865 6.96163 7.01474 7.13534 7.26208 7.70631 7.84945 8.02556 8.45580 9.07328 9.63924 11.13127 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.014469 B = 0.004146 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.642373 B = 6751.470322 C = 7984.360809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.102 4.102 11 C -0.087 4.087 12 C -0.064 4.064 13 C -0.118 4.118 14 C -0.124 4.124 15 C -0.134 4.134 16 C -0.114 4.114 17 C -0.076 4.076 18 C -0.049 4.049 19 C -0.068 4.068 20 C -0.113 4.113 21 C -0.119 4.119 22 C -0.130 4.130 23 C -0.121 4.121 24 C -0.118 4.118 25 H 0.259 0.741 26 H 0.015 0.985 27 H 0.016 0.984 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.119 0.881 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.124 0.876 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.820 -18.542 6.643 21.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.139 4.139 11 C -0.124 4.124 12 C -0.064 4.064 13 C -0.136 4.136 14 C -0.142 4.142 15 C -0.152 4.152 16 C -0.132 4.132 17 C -0.076 4.076 18 C -0.086 4.086 19 C -0.068 4.068 20 C -0.131 4.131 21 C -0.137 4.137 22 C -0.148 4.148 23 C -0.139 4.139 24 C -0.136 4.136 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.139 0.861 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.137 0.863 36 H 0.104 0.896 37 H 0.114 0.886 38 H 0.142 0.858 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.670 -18.421 6.643 21.031 hybrid contribution 0.501 0.925 -0.039 1.053 sum 8.172 -17.496 6.604 20.408 Atomic orbital electron populations 1.69974 1.06029 1.26412 1.51133 1.25017 0.94823 0.99193 0.95407 0.86576 0.80171 0.83941 0.77569 1.19753 1.21029 1.21029 1.21305 0.93058 0.91120 1.50197 0.92719 1.19124 0.94000 0.91333 0.97199 1.21603 0.98966 0.92894 1.00447 1.20811 0.96231 0.92884 1.02493 1.20011 0.97693 0.96442 0.92210 1.21056 0.98354 0.96508 0.97718 1.21067 0.97993 0.97444 0.97731 1.21013 1.00913 1.00530 0.92734 1.21084 0.97797 0.96374 0.97972 1.19569 0.97694 0.96470 0.93876 1.19698 0.99116 1.00814 0.88925 1.19843 0.94960 0.95668 0.96360 1.21145 0.94287 1.00164 0.97458 1.21144 0.99846 0.96728 0.95986 1.21106 0.96270 0.97307 1.00105 1.21107 0.95038 1.00036 0.97755 1.21091 1.00096 0.96389 0.96033 0.93110 0.96627 0.96607 0.93335 0.93364 0.91477 0.91314 0.86136 0.86640 0.86806 0.86277 0.89604 0.88565 0.85833 0.86219 0.86446 0.86336 0.86136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.52 -14.76 9.11 -34.44 -0.31 -15.08 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.10 -2.09 5.08 -26.73 -0.14 -2.22 16 11 C -0.09 -1.48 4.80 -27.88 -0.13 -1.61 16 12 C -0.06 -0.98 5.13 -104.62 -0.54 -1.52 16 13 C -0.12 -1.69 9.69 -39.58 -0.38 -2.08 16 14 C -0.12 -1.59 10.05 -39.58 -0.40 -1.98 16 15 C -0.13 -1.68 10.05 -39.58 -0.40 -2.08 16 16 C -0.11 -1.53 9.10 -39.58 -0.36 -1.89 16 17 C -0.08 -1.09 5.85 -104.62 -0.61 -1.70 16 18 C -0.05 -0.66 4.43 -29.03 -0.13 -0.79 16 19 C -0.07 -0.84 3.29 -104.62 -0.34 -1.19 16 20 C -0.11 -1.37 9.44 -39.59 -0.37 -1.74 16 21 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 22 C -0.13 -1.28 10.05 -39.58 -0.40 -1.67 16 23 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 24 C -0.12 -1.32 9.42 -39.58 -0.37 -1.69 16 25 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.98 6.80 -51.93 -0.35 0.63 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 1.12 8.06 -51.93 -0.42 0.71 16 31 H 0.07 1.13 6.97 -51.93 -0.36 0.77 16 32 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 34 H 0.11 1.17 8.06 -52.49 -0.42 0.74 16 35 H 0.12 1.51 6.11 -52.48 -0.32 1.18 16 36 H 0.09 1.10 7.70 -51.93 -0.40 0.70 16 37 H 0.10 1.43 6.58 -51.93 -0.34 1.09 16 38 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 39 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 40 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 41 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 42 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 347.32 15.07 5.23 5.23 Total: -1.00 -30.69 347.32 -11.36 -42.05 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -6.39 Total: 0.83 kcal Atomic # 6 Polarization: -32.67 SS G_CDS: -5.92 Total: -38.59 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 0.74 Total: -26.29 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.69 -11.36 -42.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066045.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.298 kcal (2) G-P(sol) polarization free energy of solvation -30.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds