Wall clock time and date at job start Tue Mar 31 2020 01:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00001 * 2 1 4 4 O 1.42900 * 109.46993 * 75.00214 * 3 2 1 5 5 C 1.35891 * 117.00178 * 75.00316 * 4 3 2 6 6 C 1.38798 * 120.02988 * 0.02562 * 5 4 3 7 7 C 1.38145 * 120.05557 * 179.97438 * 6 5 4 8 8 C 1.38199 * 120.11242 * 359.74773 * 7 6 5 9 9 C 1.50704 * 119.97654 * 180.25527 * 8 7 6 10 10 C 1.53004 * 109.46778 * 265.25632 * 9 8 7 11 11 C 1.52996 * 109.46855 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47287 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99748 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99929 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99709 * 179.97438 * 14 12 11 16 16 Si 1.86792 * 120.00325 * 359.97438 * 14 12 11 17 17 H 1.48506 * 109.47350 * 89.99985 * 16 14 12 18 18 H 1.48498 * 109.47444 * 210.00053 * 16 14 12 19 19 H 1.48500 * 109.47479 * 330.00301 * 16 14 12 20 20 C 1.38750 * 120.05389 * 0.50871 * 8 7 6 21 21 O 1.35891 * 120.03171 * 179.77047 * 20 8 7 22 22 C 1.42903 * 117.00396 * 179.72455 * 21 20 8 23 23 C 1.38616 * 120.02656 * 180.02562 * 5 4 3 24 24 H 1.08996 * 109.47009 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46934 * 300.00029 * 1 2 3 26 26 H 1.09000 * 109.46845 * 59.99719 * 1 2 3 27 27 H 1.09003 * 109.47369 * 315.00173 * 3 2 1 28 28 H 1.09004 * 109.47299 * 194.99787 * 3 2 1 29 29 H 1.08000 * 119.96937 * 0.02562 * 6 5 4 30 30 H 1.08005 * 119.94392 * 180.02562 * 7 6 5 31 31 H 1.08999 * 109.46947 * 25.25318 * 9 8 7 32 32 H 1.08994 * 109.47340 * 145.25602 * 9 8 7 33 33 H 1.08999 * 109.47126 * 299.99577 * 10 9 8 34 34 H 1.08994 * 109.47209 * 59.99890 * 10 9 8 35 35 H 1.09011 * 109.47170 * 299.99634 * 11 10 9 36 36 H 1.08997 * 109.47556 * 59.99385 * 11 10 9 37 37 H 0.97001 * 119.99814 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.47382 * 179.97438 * 22 21 20 39 39 H 1.09001 * 109.46938 * 59.99709 * 22 21 20 40 40 H 1.09004 * 109.46926 * 299.99830 * 22 21 20 41 41 H 1.08003 * 120.05589 * 0.03821 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.8854 1.8824 1.3014 5 6 2.7188 1.4131 2.2668 6 6 3.6383 0.4177 1.9669 7 6 4.4861 -0.0594 2.9478 8 6 4.4246 0.4565 4.2284 9 6 5.3548 -0.0621 5.2946 10 6 4.6533 -1.1640 6.0913 11 6 5.5974 -1.6901 7.1742 12 6 4.9068 -2.7759 7.9586 13 1 3.8955 -3.0618 7.7098 14 6 5.5661 -3.4043 8.9937 15 7 4.9632 -4.3515 9.6785 16 14 7.3155 -2.9103 9.4235 17 1 7.2887 -1.8205 10.4319 18 1 8.0382 -4.0820 9.9802 19 1 8.0106 -2.4355 8.2001 20 6 3.5035 1.4480 4.5346 21 8 3.4402 1.9517 5.7951 22 6 2.4720 2.9745 6.0373 23 6 2.6511 1.9282 3.5519 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.4942 1.9330 -0.7267 28 1 3.0649 1.2337 -0.2659 29 1 3.6917 0.0164 0.9657 30 1 5.2013 -0.8337 2.7123 31 1 6.2528 -0.4668 4.8278 32 1 5.6292 0.7524 5.9649 33 1 3.7553 -0.7593 6.5581 34 1 4.3789 -1.9785 5.4210 35 1 6.4958 -2.0947 6.7078 36 1 5.8716 -0.8755 7.8444 37 1 5.4269 -4.7933 10.4070 38 1 2.5266 3.2869 7.0802 39 1 1.4749 2.5883 5.8258 40 1 2.6758 3.8281 5.3907 41 1 1.9358 2.7024 3.7874 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066873.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:38 Heat of formation + Delta-G solvation = -112.851740 kcal Electronic energy + Delta-G solvation = -21625.167095 eV Core-core repulsion = 18277.624995 eV Total energy + Delta-G solvation = -3347.542101 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.62260 -39.39188 -37.46253 -36.46146 -34.41215 -32.33829 -30.51214 -30.00610 -28.04655 -27.44915 -26.63788 -25.37923 -23.22911 -22.12964 -20.98014 -19.89158 -18.90213 -17.21211 -17.19606 -16.66015 -16.50836 -15.96555 -15.65974 -15.23580 -14.84752 -14.19174 -14.12017 -13.99748 -13.92143 -13.49760 -13.05113 -12.84399 -12.44241 -12.19402 -11.93756 -11.83060 -11.63775 -11.44631 -11.27601 -10.98113 -10.87399 -10.63104 -10.53354 -10.41653 -9.78132 -9.54845 -9.49365 -9.06746 -8.53728 -8.43987 -7.74738 -5.94814 -3.91523 1.44442 1.53548 2.96526 3.37058 3.37964 3.43109 3.44523 3.49659 3.85311 4.54162 4.59358 4.74972 4.86270 4.98014 5.03552 5.09853 5.15607 5.16860 5.19944 5.38241 5.39619 5.40891 5.52136 5.56217 5.71652 5.87809 6.12349 6.20270 6.38000 6.43755 6.51042 6.54264 6.74090 6.87479 6.90065 7.09404 7.22463 7.48125 7.52836 7.60607 7.91258 8.66061 9.11449 9.68450 11.19001 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.021898 B = 0.003536 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.350398 B = 7915.749902 C = 8431.053087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.392 6.392 3 C 0.213 3.787 4 O -0.334 6.334 5 C 0.150 3.850 6 C -0.228 4.228 7 C -0.046 4.046 8 C -0.129 4.129 9 C -0.073 4.073 10 C -0.093 4.093 11 C -0.014 4.014 12 C -0.516 4.516 13 H 0.070 0.930 14 C 0.063 3.937 15 N -0.907 5.907 16 Si 0.881 3.119 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.265 1.265 20 C 0.163 3.837 21 O -0.301 6.301 22 C 0.026 3.974 23 C -0.240 4.240 24 H 0.088 0.912 25 H 0.049 0.951 26 H 0.043 0.957 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.014 0.986 36 H 0.011 0.989 37 H 0.261 0.739 38 H 0.100 0.900 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.509 16.025 -19.840 26.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.312 6.312 3 C 0.099 3.901 4 O -0.250 6.250 5 C 0.106 3.894 6 C -0.247 4.247 7 C -0.064 4.064 8 C -0.130 4.130 9 C -0.110 4.110 10 C -0.131 4.131 11 C -0.052 4.052 12 C -0.554 4.554 13 H 0.088 0.912 14 C -0.137 4.137 15 N -0.547 5.547 16 Si 0.708 3.292 17 H -0.204 1.204 18 H -0.215 1.215 19 H -0.190 1.190 20 C 0.117 3.883 21 O -0.213 6.213 22 C -0.069 4.069 23 C -0.259 4.259 24 H 0.107 0.893 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.120 0.880 28 H 0.120 0.880 29 H 0.147 0.853 30 H 0.150 0.850 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.032 0.968 36 H 0.029 0.971 37 H 0.071 0.929 38 H 0.118 0.882 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.414 15.832 -19.510 25.931 hybrid contribution 0.440 0.391 0.081 0.594 sum -5.975 16.223 -19.429 26.007 Atomic orbital electron populations 1.22828 0.80201 1.03234 1.00407 1.88080 1.21071 1.28439 1.93595 1.24170 0.99876 0.83377 0.82655 1.86170 1.57898 1.60697 1.20275 1.18476 0.89622 0.93347 0.87958 1.21108 1.00658 1.01831 1.01110 1.20710 0.97298 0.97355 0.91083 1.19452 0.99718 0.97777 0.96013 1.20576 0.96220 0.99227 0.95017 1.21410 0.99061 0.95467 0.97132 1.19592 0.95409 0.96059 0.94093 1.21199 1.01839 1.17722 1.14599 0.91162 1.25048 0.97933 0.94762 0.95958 1.69931 1.37636 1.25352 1.21783 0.86760 0.85442 0.77979 0.79002 1.20372 1.21544 1.18951 1.18520 0.93679 0.92766 0.83300 1.86202 1.56373 1.52720 1.26028 1.23065 0.91591 0.89467 1.02771 1.20317 1.06180 1.07845 0.91575 0.89312 0.93195 0.93823 0.87995 0.87974 0.85261 0.84997 0.91740 0.91224 0.92718 0.93043 0.96771 0.97074 0.92898 0.88154 0.92689 0.92925 0.85079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.89 101.05 1.10 1.33 16 2 O -0.39 -4.04 10.19 -59.04 -0.60 -4.65 16 3 C 0.21 1.81 6.39 101.05 0.65 2.46 16 4 O -0.33 -3.90 10.19 -43.21 -0.44 -4.34 16 5 C 0.15 2.03 6.62 -39.23 -0.26 1.77 16 6 C -0.23 -3.02 8.78 -39.41 -0.35 -3.36 16 7 C -0.05 -0.67 9.67 -39.63 -0.38 -1.05 16 8 C -0.13 -2.09 5.15 -104.45 -0.54 -2.63 16 9 C -0.07 -1.30 5.06 -27.88 -0.14 -1.44 16 10 C -0.09 -2.00 5.14 -26.73 -0.14 -2.14 16 11 C -0.01 -0.36 4.04 -27.88 -0.11 -0.47 16 12 C -0.52 -15.40 9.66 -34.44 -0.33 -15.73 16 13 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 14 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 15 N -0.91 -28.91 13.96 55.43 0.77 -28.13 16 16 Si 0.88 22.48 27.47 -169.99 -4.67 17.81 16 17 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 18 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 19 H -0.26 -6.48 6.54 56.52 0.37 -6.12 16 20 C 0.16 2.55 6.66 -39.23 -0.26 2.29 16 21 O -0.30 -4.66 9.63 -19.40 -0.19 -4.84 16 22 C 0.03 0.28 9.81 101.05 0.99 1.27 16 23 C -0.24 -3.34 8.97 -39.28 -0.35 -3.69 16 24 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.43 8.03 -51.93 -0.42 0.01 16 26 H 0.04 0.25 8.11 -51.93 -0.42 -0.17 16 27 H 0.10 0.56 8.01 -51.93 -0.42 0.15 16 28 H 0.10 0.74 6.69 -51.93 -0.35 0.39 16 29 H 0.13 1.47 5.85 -52.49 -0.31 1.17 16 30 H 0.13 1.67 8.06 -52.48 -0.42 1.25 16 31 H 0.06 1.06 8.05 -51.93 -0.42 0.64 16 32 H 0.07 1.24 7.69 -51.93 -0.40 0.85 16 33 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.01 0.35 7.20 -51.92 -0.37 -0.02 16 36 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 37 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 38 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 40 H 0.05 0.47 7.66 -51.93 -0.40 0.08 16 41 H 0.13 1.57 6.30 -52.48 -0.33 1.24 16 LS Contribution 340.25 15.07 5.13 5.13 Total: -1.00 -34.56 340.25 -6.54 -41.10 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -6.32 Total: -2.50 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: -0.22 Total: -19.58 kcal Atomic # 7 Polarization: -28.91 SS G_CDS: 0.77 Total: -28.13 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -1.23 Total: -13.83 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.67 Total: 17.81 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.56 -6.54 -41.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066873.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.753 kcal (2) G-P(sol) polarization free energy of solvation -34.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds