Wall clock time and date at job start Tue Mar 31 2020 01:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00001 * 2 1 4 4 O 1.42900 * 109.46993 * 75.00214 * 3 2 1 5 5 C 1.35891 * 117.00178 * 75.00316 * 4 3 2 6 6 C 1.38798 * 120.02988 * 0.02562 * 5 4 3 7 7 C 1.38145 * 120.05557 * 179.97438 * 6 5 4 8 8 C 1.38199 * 120.11242 * 359.74773 * 7 6 5 9 9 C 1.50704 * 119.97654 * 180.25527 * 8 7 6 10 10 C 1.53004 * 109.46778 * 265.25632 * 9 8 7 11 11 C 1.52996 * 109.46855 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47287 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99748 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99929 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99709 * 179.97438 * 14 12 11 16 16 Si 1.86792 * 120.00325 * 359.97438 * 14 12 11 17 17 H 1.48506 * 109.47350 * 89.99985 * 16 14 12 18 18 H 1.48498 * 109.47444 * 210.00053 * 16 14 12 19 19 H 1.48500 * 109.47479 * 330.00301 * 16 14 12 20 20 C 1.38750 * 120.05389 * 0.50871 * 8 7 6 21 21 O 1.35891 * 120.03171 * 179.77047 * 20 8 7 22 22 C 1.42903 * 117.00396 * 179.72455 * 21 20 8 23 23 C 1.38616 * 120.02656 * 180.02562 * 5 4 3 24 24 H 1.08996 * 109.47009 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46934 * 300.00029 * 1 2 3 26 26 H 1.09000 * 109.46845 * 59.99719 * 1 2 3 27 27 H 1.09003 * 109.47369 * 315.00173 * 3 2 1 28 28 H 1.09004 * 109.47299 * 194.99787 * 3 2 1 29 29 H 1.08000 * 119.96937 * 0.02562 * 6 5 4 30 30 H 1.08005 * 119.94392 * 180.02562 * 7 6 5 31 31 H 1.08999 * 109.46947 * 25.25318 * 9 8 7 32 32 H 1.08994 * 109.47340 * 145.25602 * 9 8 7 33 33 H 1.08999 * 109.47126 * 299.99577 * 10 9 8 34 34 H 1.08994 * 109.47209 * 59.99890 * 10 9 8 35 35 H 1.09011 * 109.47170 * 299.99634 * 11 10 9 36 36 H 1.08997 * 109.47556 * 59.99385 * 11 10 9 37 37 H 0.97001 * 119.99814 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.47382 * 179.97438 * 22 21 20 39 39 H 1.09001 * 109.46938 * 59.99709 * 22 21 20 40 40 H 1.09004 * 109.46926 * 299.99830 * 22 21 20 41 41 H 1.08003 * 120.05589 * 0.03821 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.8854 1.8824 1.3014 5 6 2.7188 1.4131 2.2668 6 6 3.6383 0.4177 1.9669 7 6 4.4861 -0.0594 2.9478 8 6 4.4246 0.4565 4.2284 9 6 5.3548 -0.0621 5.2946 10 6 4.6533 -1.1640 6.0913 11 6 5.5974 -1.6901 7.1742 12 6 4.9068 -2.7759 7.9586 13 1 3.8955 -3.0618 7.7098 14 6 5.5661 -3.4043 8.9937 15 7 4.9632 -4.3515 9.6785 16 14 7.3155 -2.9103 9.4235 17 1 7.2887 -1.8205 10.4319 18 1 8.0382 -4.0820 9.9802 19 1 8.0106 -2.4355 8.2001 20 6 3.5035 1.4480 4.5346 21 8 3.4402 1.9517 5.7951 22 6 2.4720 2.9745 6.0373 23 6 2.6511 1.9282 3.5519 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.4942 1.9330 -0.7267 28 1 3.0649 1.2337 -0.2659 29 1 3.6917 0.0164 0.9657 30 1 5.2013 -0.8337 2.7123 31 1 6.2528 -0.4668 4.8278 32 1 5.6292 0.7524 5.9649 33 1 3.7553 -0.7593 6.5581 34 1 4.3789 -1.9785 5.4210 35 1 6.4958 -2.0947 6.7078 36 1 5.8716 -0.8755 7.8444 37 1 5.4269 -4.7933 10.4070 38 1 2.5266 3.2869 7.0802 39 1 1.4749 2.5883 5.8258 40 1 2.6758 3.8281 5.3907 41 1 1.9358 2.7024 3.7874 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066873.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:37 Heat of formation + Delta-G solvation = -134.823662 kcal Electronic energy + Delta-G solvation = -21626.119870 eV Core-core repulsion = 18277.624995 eV Total energy + Delta-G solvation = -3348.494875 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.60956 -40.30983 -38.35545 -37.48693 -36.11028 -34.33370 -31.92479 -31.21240 -29.01007 -28.42508 -27.87215 -26.26151 -24.82549 -23.17250 -22.36284 -21.62135 -19.82525 -18.87455 -18.11061 -17.91505 -17.50307 -16.91781 -16.66854 -16.42345 -16.03852 -15.77672 -15.54248 -14.96270 -14.88946 -14.73141 -14.60479 -14.12528 -14.02794 -13.32213 -13.16644 -13.10866 -12.85297 -12.66625 -12.46736 -12.31558 -12.28019 -11.81921 -11.74860 -11.62378 -11.38354 -11.31567 -11.24099 -11.14846 -10.74367 -9.59841 -8.87039 -8.27749 -6.31856 0.37094 0.45063 1.37372 1.39590 1.52580 2.12458 2.38703 2.47221 2.66122 2.87184 3.07374 3.81576 3.94497 4.02598 4.08226 4.22386 4.27015 4.29491 4.38523 4.41116 4.45961 4.50214 4.55406 4.60503 4.67237 4.73265 4.83806 4.85033 4.94704 5.13752 5.15016 5.24866 5.37180 5.49913 5.57342 5.63671 5.71221 5.73571 5.87511 6.30954 6.31720 6.50423 6.75733 7.32450 8.89541 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.021898 B = 0.003536 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.350398 B = 7915.749902 C = 8431.053087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.414 6.414 3 C 0.202 3.798 4 O -0.339 6.339 5 C 0.152 3.848 6 C -0.229 4.229 7 C -0.048 4.048 8 C -0.159 4.159 9 C -0.060 4.060 10 C -0.083 4.083 11 C -0.010 4.010 12 C -0.534 4.534 13 H 0.025 0.975 14 C 0.000 4.000 15 N -0.955 5.955 16 Si 0.956 3.044 17 H -0.267 1.267 18 H -0.282 1.282 19 H -0.243 1.243 20 C 0.153 3.847 21 O -0.328 6.328 22 C 0.018 3.982 23 C -0.247 4.247 24 H 0.092 0.908 25 H 0.038 0.962 26 H 0.068 0.932 27 H 0.136 0.864 28 H 0.116 0.884 29 H 0.149 0.851 30 H 0.146 0.854 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.035 0.965 34 H 0.042 0.958 35 H 0.024 0.976 36 H 0.017 0.983 37 H 0.266 0.734 38 H 0.114 0.886 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.392 17.691 -21.586 28.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C 0.090 3.910 4 O -0.255 6.255 5 C 0.107 3.893 6 C -0.248 4.248 7 C -0.066 4.066 8 C -0.159 4.159 9 C -0.097 4.097 10 C -0.121 4.121 11 C -0.047 4.047 12 C -0.572 4.572 13 H 0.043 0.957 14 C -0.196 4.196 15 N -0.596 5.596 16 Si 0.778 3.222 17 H -0.192 1.192 18 H -0.208 1.208 19 H -0.167 1.167 20 C 0.107 3.893 21 O -0.241 6.241 22 C -0.076 4.076 23 C -0.267 4.267 24 H 0.110 0.890 25 H 0.057 0.943 26 H 0.087 0.913 27 H 0.154 0.846 28 H 0.134 0.866 29 H 0.166 0.834 30 H 0.164 0.836 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.042 0.958 36 H 0.035 0.965 37 H 0.075 0.925 38 H 0.133 0.867 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.319 17.515 -21.280 28.070 hybrid contribution -0.098 -0.135 0.546 0.571 sum -5.417 17.380 -20.734 27.591 Atomic orbital electron populations 1.22958 0.79292 1.03791 1.01091 1.88049 1.22243 1.29521 1.93566 1.24661 1.01282 0.83457 0.81622 1.86188 1.57326 1.60855 1.21159 1.18641 0.89438 0.92846 0.88326 1.21308 1.00130 1.01618 1.01713 1.20922 0.97655 0.97365 0.90647 1.19432 1.00733 0.99372 0.96402 1.20349 0.96678 0.97572 0.95085 1.21235 0.97963 0.96471 0.96382 1.19540 0.95922 0.94650 0.94614 1.21537 1.00510 1.19378 1.15736 0.95670 1.26095 1.03386 0.94490 0.95606 1.70090 1.40046 1.26804 1.22615 0.85578 0.78873 0.78053 0.79669 1.19158 1.20791 1.16659 1.18684 0.93938 0.92935 0.83750 1.86153 1.57771 1.53958 1.26252 1.23336 0.90999 0.89118 1.04174 1.20489 1.06245 1.08305 0.91623 0.88981 0.94293 0.91308 0.84646 0.86644 0.83392 0.83600 0.90237 0.91546 0.94658 0.93892 0.95764 0.96462 0.92503 0.86736 0.92202 0.91050 0.83543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.89 113.37 1.23 1.58 16 2 O -0.41 -7.67 10.19 -126.21 -1.29 -8.96 16 3 C 0.20 2.89 6.39 113.37 0.72 3.61 16 4 O -0.34 -7.17 10.19 -69.56 -0.71 -7.88 16 5 C 0.15 3.87 6.62 22.49 0.15 4.01 16 6 C -0.23 -5.65 8.78 22.38 0.20 -5.46 16 7 C -0.05 -1.32 9.67 22.24 0.22 -1.10 16 8 C -0.16 -5.07 5.15 -19.75 -0.10 -5.17 16 9 C -0.06 -2.08 5.06 29.85 0.15 -1.93 16 10 C -0.08 -3.62 5.14 30.59 0.16 -3.46 16 11 C -0.01 -0.50 4.04 29.85 0.12 -0.38 16 12 C -0.53 -32.79 9.66 25.60 0.25 -32.54 16 13 H 0.02 1.71 7.99 -2.91 -0.02 1.68 16 14 C 0.00 0.02 5.47 84.65 0.46 0.48 16 15 N -0.95 -62.26 13.96 21.45 0.30 -61.97 16 16 Si 0.96 45.93 27.47 68.60 1.88 47.81 16 17 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 19 H -0.24 -10.78 6.54 99.48 0.65 -10.13 16 20 C 0.15 4.72 6.66 22.49 0.15 4.87 16 21 O -0.33 -10.13 9.63 -92.32 -0.89 -11.02 16 22 C 0.02 0.37 9.81 113.37 1.11 1.48 16 23 C -0.25 -6.62 8.97 22.46 0.20 -6.42 16 24 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.04 0.62 8.03 -2.39 -0.02 0.60 16 26 H 0.07 0.60 8.11 -2.39 -0.02 0.58 16 27 H 0.14 1.01 8.01 -2.39 -0.02 0.99 16 28 H 0.12 1.32 6.69 -2.38 -0.02 1.31 16 29 H 0.15 3.02 5.85 -2.91 -0.02 3.00 16 30 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 31 H 0.08 2.49 8.05 -2.39 -0.02 2.47 16 32 H 0.07 2.33 7.69 -2.39 -0.02 2.31 16 33 H 0.03 1.63 8.14 -2.39 -0.02 1.62 16 34 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.02 1.16 7.20 -2.38 -0.02 1.14 16 36 H 0.02 0.84 7.57 -2.39 -0.02 0.82 16 37 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 38 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.06 1.15 7.66 -2.39 -0.02 1.13 16 40 H 0.07 1.18 7.66 -2.38 -0.02 1.16 16 41 H 0.15 3.31 6.30 -2.91 -0.02 3.29 16 Total: -1.00 -76.03 340.25 5.27 -70.75 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 0.95 Total: 11.67 kcal Atomic # 6 Polarization: -45.43 SS G_CDS: 5.02 Total: -40.41 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: 0.30 Total: -61.97 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -2.88 Total: -27.85 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.88 Total: 47.81 kcal Total: -76.03 5.27 -70.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066873.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.071 kcal (2) G-P(sol) polarization free energy of solvation -76.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds