Wall clock time and date at job start Tue Mar 31 2020 02:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 119.99947 * 2 1 4 4 H 1.48504 * 109.47048 * 270.00239 * 3 2 1 5 5 H 1.48495 * 109.47114 * 29.99860 * 3 2 1 6 6 H 1.48496 * 109.47458 * 150.00157 * 3 2 1 7 7 C 1.37874 * 120.00392 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00178 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99969 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47107 * 180.02562 * 9 7 2 11 11 N 1.46508 * 109.46985 * 180.02562 * 10 9 7 12 12 C 1.34773 * 119.99905 * 179.97438 * 11 10 9 13 13 O 1.21348 * 119.99999 * 0.02562 * 12 11 10 14 14 C 1.49448 * 119.99965 * 180.02562 * 12 11 10 15 15 O 1.21355 * 120.00068 * 0.02562 * 14 12 11 16 16 N 1.34770 * 120.00240 * 180.02562 * 14 12 11 17 17 C 1.46504 * 120.00407 * 180.02562 * 16 14 12 18 18 C 1.52995 * 109.47538 * 224.20926 * 17 16 14 19 19 C 1.52992 * 117.50352 * 106.97302 * 18 17 16 20 20 C 1.52992 * 117.50419 * 175.63759 * 18 17 16 21 21 C 1.52999 * 109.47347 * 104.20310 * 17 16 14 22 22 C 1.53001 * 117.49999 * 8.75026 * 21 17 16 23 23 C 1.52997 * 117.50037 * 300.08864 * 21 17 16 24 24 H 0.97004 * 120.00677 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46556 * 60.00086 * 9 7 2 26 26 H 1.08999 * 109.46999 * 300.00706 * 9 7 2 27 27 H 1.08995 * 109.47150 * 60.00527 * 10 9 7 28 28 H 1.09001 * 109.47343 * 299.99888 * 10 9 7 29 29 H 0.97001 * 119.99686 * 0.02562 * 11 10 9 30 30 H 0.97001 * 120.00133 * 359.97438 * 16 14 12 31 31 H 1.09008 * 109.46522 * 344.20314 * 17 16 14 32 32 H 1.09007 * 115.54255 * 321.30495 * 18 17 16 33 33 H 1.09006 * 117.50411 * 215.00840 * 19 18 17 34 34 H 1.08999 * 117.49818 * 0.02562 * 19 18 17 35 35 H 1.09003 * 117.49386 * 359.97438 * 20 18 17 36 36 H 1.08999 * 117.50086 * 144.97244 * 20 18 17 37 37 H 1.08998 * 115.54632 * 154.41907 * 21 17 16 38 38 H 1.09008 * 117.49174 * 359.97438 * 22 21 17 39 39 H 1.09000 * 117.50022 * 145.01454 * 22 21 17 40 40 H 1.08997 * 117.50342 * 214.97863 * 23 21 17 41 41 H 1.08998 * 117.49824 * 359.97438 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5129 -4.9308 -0.0012 12 6 2.1868 -6.0980 -0.0018 13 8 3.4003 -6.0979 -0.0014 14 6 1.4396 -7.3923 -0.0030 15 8 0.2261 -7.3923 -0.0039 16 7 2.1135 -8.5594 -0.0031 17 6 1.3811 -9.8282 -0.0049 18 6 2.0204 -10.7876 1.0009 19 6 1.2622 -11.0550 2.3026 20 6 1.3358 -12.1377 1.2231 21 6 1.4342 -10.4459 -1.4036 22 6 2.3597 -9.7904 -2.4307 23 6 0.8423 -9.6339 -2.5574 24 1 -0.4851 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6247 -2.5571 0.8896 27 1 2.8719 -3.6043 0.8895 28 1 2.8720 -3.6043 -0.8905 29 1 0.5429 -4.9308 -0.0019 30 1 3.0835 -8.5594 -0.0028 31 1 0.3427 -9.6486 0.2739 32 1 3.1091 -10.7614 1.0488 33 1 1.8519 -11.2047 3.2070 34 1 0.3076 -10.5477 2.4423 35 1 0.4296 -12.3422 0.6529 36 1 1.9740 -12.9998 1.4168 37 1 1.3257 -11.5297 -1.4433 38 1 2.9304 -8.9189 -2.1098 39 1 2.8598 -10.4431 -3.1463 40 1 0.3447 -10.1835 -3.3564 41 1 0.4146 -8.6598 -2.3199 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256948197.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:16 Heat of formation + Delta-G solvation = -31.448932 kcal Electronic energy + Delta-G solvation = -21464.251909 eV Core-core repulsion = 18152.532450 eV Total energy + Delta-G solvation = -3311.719459 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.74051 -39.09685 -37.77487 -36.53996 -35.21144 -33.77532 -32.82707 -29.83694 -28.25792 -25.48462 -23.54547 -22.77104 -22.68810 -21.77269 -21.03605 -20.14028 -20.08827 -18.15933 -17.13466 -16.64378 -16.30609 -15.86603 -15.35798 -15.02487 -14.90979 -14.51286 -14.27052 -14.08026 -13.66590 -13.28710 -12.85500 -12.33797 -12.29101 -12.03905 -11.85731 -11.68198 -11.54142 -11.24450 -11.06646 -10.84902 -10.74451 -10.67145 -10.40380 -10.27370 -10.20433 -9.79418 -9.44847 -9.34116 -9.19303 -8.70359 -8.42346 -6.10586 -4.14339 1.59669 2.48098 3.28742 3.34977 3.36318 3.38779 3.44442 3.59460 3.91683 4.22085 4.39852 4.50175 4.65168 4.69542 4.74817 4.75748 4.82491 5.06676 5.21767 5.26334 5.32682 5.38918 5.51701 5.59216 5.70882 5.79775 5.81381 5.93727 6.00478 6.17185 6.21623 6.23143 6.58781 6.68611 7.05644 7.46326 7.57260 7.66629 7.86641 7.92265 8.20592 8.33270 8.91282 9.50648 11.00913 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.032295 B = 0.002933 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.786171 B = 9545.548296 C = 9754.090865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.524 4.524 8 H 0.060 0.940 9 C 0.011 3.989 10 C 0.119 3.881 11 N -0.686 5.686 12 C 0.496 3.504 13 O -0.533 6.533 14 C 0.510 3.490 15 O -0.520 6.520 16 N -0.696 5.696 17 C 0.199 3.801 18 C -0.162 4.162 19 C -0.176 4.176 20 C -0.169 4.169 21 C -0.166 4.166 22 C -0.175 4.175 23 C -0.175 4.175 24 H 0.263 0.737 25 H 0.025 0.975 26 H 0.025 0.975 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.410 0.590 30 H 0.413 0.587 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.115 0.885 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.491 -24.314 -0.342 24.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.562 4.562 8 H 0.078 0.922 9 C -0.026 4.026 10 C -0.003 4.003 11 N -0.336 5.336 12 C 0.276 3.724 13 O -0.411 6.411 14 C 0.291 3.709 15 O -0.395 6.395 16 N -0.349 5.349 17 C 0.094 3.906 18 C -0.181 4.181 19 C -0.213 4.213 20 C -0.207 4.207 21 C -0.185 4.185 22 C -0.213 4.213 23 C -0.212 4.212 24 H 0.072 0.928 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.246 0.754 30 H 0.249 0.751 31 H 0.123 0.877 32 H 0.128 0.872 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.133 0.867 38 H 0.115 0.885 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.318 -24.139 -0.333 24.252 hybrid contribution 0.440 0.906 -0.029 1.008 sum 2.758 -23.233 -0.361 23.399 Atomic orbital electron populations 1.69954 1.06105 1.26971 1.50050 1.24999 0.94895 0.99445 0.94924 0.86497 0.79804 0.82955 0.78207 1.20538 1.21146 1.19722 1.21012 0.93220 0.90243 1.51744 0.92167 1.19355 0.94180 0.90866 0.98236 1.21937 0.96275 0.80753 1.01326 1.46236 1.11778 1.05793 1.69822 1.19978 0.87732 0.85266 0.79446 1.90730 1.13212 1.87533 1.49658 1.20486 0.87808 0.85635 0.76949 1.90752 1.13392 1.87531 1.47794 1.45758 1.11333 1.04571 1.73278 1.20103 0.97238 0.81083 0.92143 1.22442 0.99370 0.98014 0.98261 1.23074 1.02409 1.02841 0.92935 1.22937 1.02824 0.92034 1.02866 1.22728 1.06505 0.98956 0.90324 1.22992 0.93366 1.03253 1.01658 1.22983 0.96073 1.02162 1.00001 0.92757 0.95668 0.95670 0.91860 0.91872 0.75396 0.75064 0.87690 0.87187 0.88573 0.88449 0.88437 0.88501 0.86749 0.88453 0.88843 0.88755 0.88501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.01 0.27 5.09 -27.88 -0.14 0.13 16 10 C 0.12 2.48 5.61 -4.04 -0.02 2.46 16 11 N -0.69 -12.46 5.55 -60.73 -0.34 -12.80 16 12 C 0.50 8.48 7.89 -11.59 -0.09 8.39 16 13 O -0.53 -10.00 16.48 5.50 0.09 -9.91 16 14 C 0.51 7.49 7.61 -11.59 -0.09 7.40 16 15 O -0.52 -8.53 15.58 5.49 0.09 -8.45 16 16 N -0.70 -7.90 3.36 -54.23 -0.18 -8.09 16 17 C 0.20 1.91 2.80 -67.93 -0.19 1.72 16 18 C -0.16 -1.26 5.38 -90.63 -0.49 -1.74 16 19 C -0.18 -1.33 10.18 -26.70 -0.27 -1.60 16 20 C -0.17 -1.08 9.67 -26.70 -0.26 -1.33 16 21 C -0.17 -1.44 5.62 -90.62 -0.51 -1.95 16 22 C -0.18 -1.62 9.85 -26.69 -0.26 -1.88 16 23 C -0.18 -1.76 10.17 -26.69 -0.27 -2.03 16 24 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 25 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 29 H 0.41 7.13 7.94 -40.82 -0.32 6.81 16 30 H 0.41 4.32 7.89 -40.82 -0.32 4.00 16 31 H 0.11 1.19 6.85 -51.92 -0.36 0.84 16 32 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.10 0.80 8.08 -51.93 -0.42 0.38 16 35 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.11 0.82 7.68 -51.93 -0.40 0.43 16 38 H 0.10 1.01 6.72 -51.92 -0.35 0.66 16 39 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.10 1.21 7.56 -51.93 -0.39 0.81 16 LS Contribution 349.72 15.07 5.27 5.27 Total: -1.00 -30.45 349.72 -8.69 -39.15 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -6.33 Total: 7.55 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -3.01 Total: -3.58 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: 0.22 Total: -46.27 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: 0.18 Total: -18.36 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.45 -8.69 -39.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256948197.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.698 kcal (2) G-P(sol) polarization free energy of solvation -30.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds