Wall clock time and date at job start Tue Mar 31 2020 02:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 119.99947 * 2 1 4 4 H 1.48504 * 109.47048 * 270.00239 * 3 2 1 5 5 H 1.48495 * 109.47114 * 29.99860 * 3 2 1 6 6 H 1.48496 * 109.47458 * 150.00157 * 3 2 1 7 7 C 1.37874 * 120.00392 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00178 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99969 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47107 * 180.02562 * 9 7 2 11 11 N 1.46508 * 109.46985 * 180.02562 * 10 9 7 12 12 C 1.34773 * 119.99905 * 179.97438 * 11 10 9 13 13 O 1.21348 * 119.99999 * 0.02562 * 12 11 10 14 14 C 1.49448 * 119.99965 * 180.02562 * 12 11 10 15 15 O 1.21355 * 120.00068 * 0.02562 * 14 12 11 16 16 N 1.34770 * 120.00240 * 180.02562 * 14 12 11 17 17 C 1.46504 * 120.00407 * 180.02562 * 16 14 12 18 18 C 1.52995 * 109.47538 * 224.20926 * 17 16 14 19 19 C 1.52992 * 117.50352 * 106.97302 * 18 17 16 20 20 C 1.52992 * 117.50419 * 175.63759 * 18 17 16 21 21 C 1.52999 * 109.47347 * 104.20310 * 17 16 14 22 22 C 1.53001 * 117.49999 * 8.75026 * 21 17 16 23 23 C 1.52997 * 117.50037 * 300.08864 * 21 17 16 24 24 H 0.97004 * 120.00677 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46556 * 60.00086 * 9 7 2 26 26 H 1.08999 * 109.46999 * 300.00706 * 9 7 2 27 27 H 1.08995 * 109.47150 * 60.00527 * 10 9 7 28 28 H 1.09001 * 109.47343 * 299.99888 * 10 9 7 29 29 H 0.97001 * 119.99686 * 0.02562 * 11 10 9 30 30 H 0.97001 * 120.00133 * 359.97438 * 16 14 12 31 31 H 1.09008 * 109.46522 * 344.20314 * 17 16 14 32 32 H 1.09007 * 115.54255 * 321.30495 * 18 17 16 33 33 H 1.09006 * 117.50411 * 215.00840 * 19 18 17 34 34 H 1.08999 * 117.49818 * 0.02562 * 19 18 17 35 35 H 1.09003 * 117.49386 * 359.97438 * 20 18 17 36 36 H 1.08999 * 117.50086 * 144.97244 * 20 18 17 37 37 H 1.08998 * 115.54632 * 154.41907 * 21 17 16 38 38 H 1.09008 * 117.49174 * 359.97438 * 22 21 17 39 39 H 1.09000 * 117.50022 * 145.01454 * 22 21 17 40 40 H 1.08997 * 117.50342 * 214.97863 * 23 21 17 41 41 H 1.08998 * 117.49824 * 359.97438 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5129 -4.9308 -0.0012 12 6 2.1868 -6.0980 -0.0018 13 8 3.4003 -6.0979 -0.0014 14 6 1.4396 -7.3923 -0.0030 15 8 0.2261 -7.3923 -0.0039 16 7 2.1135 -8.5594 -0.0031 17 6 1.3811 -9.8282 -0.0049 18 6 2.0204 -10.7876 1.0009 19 6 1.2622 -11.0550 2.3026 20 6 1.3358 -12.1377 1.2231 21 6 1.4342 -10.4459 -1.4036 22 6 2.3597 -9.7904 -2.4307 23 6 0.8423 -9.6339 -2.5574 24 1 -0.4851 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6247 -2.5571 0.8896 27 1 2.8719 -3.6043 0.8895 28 1 2.8720 -3.6043 -0.8905 29 1 0.5429 -4.9308 -0.0019 30 1 3.0835 -8.5594 -0.0028 31 1 0.3427 -9.6486 0.2739 32 1 3.1091 -10.7614 1.0488 33 1 1.8519 -11.2047 3.2070 34 1 0.3076 -10.5477 2.4423 35 1 0.4296 -12.3422 0.6529 36 1 1.9740 -12.9998 1.4168 37 1 1.3257 -11.5297 -1.4433 38 1 2.9304 -8.9189 -2.1098 39 1 2.8598 -10.4431 -3.1463 40 1 0.3447 -10.1835 -3.3564 41 1 0.4146 -8.6598 -2.3199 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256948197.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:16 Heat of formation + Delta-G solvation = -50.535593 kcal Electronic energy + Delta-G solvation = -21465.079569 eV Core-core repulsion = 18152.532450 eV Total energy + Delta-G solvation = -3312.547119 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.92330 -40.24207 -38.87069 -37.21333 -36.84658 -35.08348 -34.57491 -31.71351 -29.20882 -27.23068 -25.01984 -23.49388 -23.38502 -22.82229 -22.44024 -21.38734 -20.96855 -19.40310 -18.60328 -18.04122 -17.52638 -17.07462 -16.61366 -16.51248 -16.27310 -15.68534 -15.54573 -15.09605 -14.89384 -14.54170 -14.31957 -14.14507 -13.27551 -13.07474 -12.95512 -12.86843 -12.73817 -12.53567 -12.44264 -12.36562 -12.29700 -11.70472 -11.54364 -11.43698 -11.36149 -10.98924 -10.94466 -10.66752 -10.62674 -10.31279 -10.21323 -8.24382 -6.35835 0.28909 1.26758 1.43048 1.43302 1.54935 2.08698 2.38609 2.59404 2.76509 2.98608 3.10616 3.40555 3.53768 3.84133 3.97037 4.06640 4.09392 4.13749 4.36777 4.39325 4.43190 4.47001 4.62510 4.76935 4.79222 4.82737 4.98462 5.04041 5.05430 5.07233 5.21491 5.23595 5.28500 5.34722 5.41119 5.53143 5.74236 5.90975 6.11596 6.33407 6.68599 6.78523 6.90236 7.33891 8.87740 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.032295 B = 0.002933 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.786171 B = 9545.548296 C = 9754.090865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.019 3.981 10 C 0.138 3.862 11 N -0.688 5.688 12 C 0.499 3.501 13 O -0.548 6.548 14 C 0.517 3.483 15 O -0.540 6.540 16 N -0.678 5.678 17 C 0.197 3.803 18 C -0.167 4.167 19 C -0.188 4.188 20 C -0.150 4.150 21 C -0.152 4.152 22 C -0.173 4.173 23 C -0.191 4.191 24 H 0.266 0.734 25 H 0.007 0.993 26 H 0.007 0.993 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.414 0.586 30 H 0.419 0.581 31 H 0.088 0.912 32 H 0.120 0.880 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.139 0.861 38 H 0.083 0.917 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.805 -25.911 -0.431 26.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.584 4.584 8 H 0.083 0.917 9 C -0.018 4.018 10 C 0.015 3.985 11 N -0.339 5.339 12 C 0.279 3.721 13 O -0.426 6.426 14 C 0.297 3.703 15 O -0.417 6.417 16 N -0.330 5.330 17 C 0.093 3.907 18 C -0.186 4.186 19 C -0.225 4.225 20 C -0.188 4.188 21 C -0.171 4.171 22 C -0.210 4.210 23 C -0.228 4.228 24 H 0.075 0.925 25 H 0.025 0.975 26 H 0.025 0.975 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.250 0.750 30 H 0.257 0.743 31 H 0.106 0.894 32 H 0.138 0.862 33 H 0.121 0.879 34 H 0.103 0.897 35 H 0.121 0.879 36 H 0.133 0.867 37 H 0.157 0.843 38 H 0.101 0.899 39 H 0.131 0.869 40 H 0.127 0.873 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.655 -25.784 -0.422 26.045 hybrid contribution 0.019 1.331 0.001 1.331 sum 3.673 -24.453 -0.421 24.731 Atomic orbital electron populations 1.70074 1.07729 1.28068 1.50944 1.25923 0.95773 1.03317 0.94384 0.85397 0.78635 0.78204 0.78525 1.19751 1.20728 1.18728 1.21451 0.93766 0.91537 1.51600 0.91677 1.19171 0.94325 0.91941 0.96408 1.21484 0.95090 0.80751 1.01145 1.46076 1.11885 1.05493 1.70486 1.20355 0.87601 0.85750 0.78346 1.90715 1.13915 1.87893 1.50113 1.19971 0.87302 0.85532 0.77503 1.90754 1.14012 1.87608 1.49355 1.45749 1.11688 1.04273 1.71314 1.20252 0.96304 0.80458 0.93673 1.22389 0.99762 0.98676 0.97782 1.23121 1.02022 1.03889 0.93454 1.23038 1.02835 0.91632 1.01255 1.22776 1.05380 0.99906 0.89033 1.23023 0.92699 1.03114 1.02178 1.22970 0.96880 1.01392 1.01530 0.92542 0.97465 0.97453 0.92000 0.92010 0.74987 0.74289 0.89442 0.86226 0.87860 0.89659 0.87905 0.86737 0.84289 0.89878 0.86908 0.87271 0.91438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.12 13.29 21.44 0.28 -54.84 16 2 C 0.00 0.27 5.46 84.66 0.46 0.73 16 3 Si 0.97 43.47 29.54 68.60 2.03 45.50 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.55 -30.24 9.11 25.60 0.23 -30.00 16 8 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 9 C 0.02 0.97 5.09 29.85 0.15 1.12 16 10 C 0.14 5.84 5.61 86.38 0.48 6.33 16 11 N -0.69 -25.47 5.55 -464.41 -2.58 -28.05 16 12 C 0.50 17.12 7.89 87.27 0.69 17.81 16 13 O -0.55 -20.34 16.48 -3.24 -0.05 -20.39 16 14 C 0.52 15.22 7.61 87.27 0.66 15.89 16 15 O -0.54 -18.07 15.58 -3.26 -0.05 -18.12 16 16 N -0.68 -14.94 3.36 -443.86 -1.49 -16.43 16 17 C 0.20 3.55 2.80 44.99 0.13 3.67 16 18 C -0.17 -2.24 5.38 -10.80 -0.06 -2.29 16 19 C -0.19 -2.55 10.18 30.61 0.31 -2.24 16 20 C -0.15 -1.48 9.67 30.61 0.30 -1.19 16 21 C -0.15 -2.34 5.62 -10.79 -0.06 -2.40 16 22 C -0.17 -2.89 9.85 30.62 0.30 -2.59 16 23 C -0.19 -3.66 10.17 30.62 0.31 -3.35 16 24 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 25 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 26 H 0.01 0.38 8.14 -2.39 -0.02 0.37 16 27 H 0.06 2.63 8.14 -2.39 -0.02 2.62 16 28 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.41 14.84 7.94 -92.71 -0.74 14.10 16 30 H 0.42 8.31 7.89 -92.71 -0.73 7.58 16 31 H 0.09 1.95 6.85 -2.38 -0.02 1.94 16 32 H 0.12 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.08 1.37 8.08 -2.39 -0.02 1.35 16 35 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.14 1.52 7.68 -2.39 -0.02 1.50 16 38 H 0.08 1.64 6.72 -2.38 -0.02 1.62 16 39 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.07 1.72 7.56 -2.39 -0.02 1.70 16 Total: -1.00 -65.23 349.72 1.63 -63.60 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: -0.42 Total: 27.25 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: 3.91 Total: 1.47 kcal Atomic # 7 Polarization: -95.53 SS G_CDS: -3.78 Total: -99.31 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -0.10 Total: -38.51 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -65.23 1.63 -63.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256948197.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.060 kcal (2) G-P(sol) polarization free energy of solvation -65.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds