Wall clock time and date at job start Tue Mar 31 2020 01:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99843 * 2 1 4 4 H 1.48504 * 109.47170 * 269.38186 * 3 2 1 5 5 H 1.48507 * 109.47275 * 29.37929 * 3 2 1 6 6 H 1.48498 * 109.47429 * 149.37911 * 3 2 1 7 7 C 1.37871 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99892 * 357.66198 * 7 2 1 9 9 C 1.50697 * 120.00076 * 177.66171 * 7 2 1 10 10 C 1.53005 * 115.54793 * 86.13962 * 9 7 2 11 11 O 1.45197 * 109.46928 * 33.38230 * 10 9 7 12 12 C 1.34229 * 116.99726 * 184.58066 * 11 10 9 13 13 O 1.20831 * 119.99999 * 1.96207 * 12 11 10 14 14 C 1.50701 * 119.99952 * 182.23831 * 12 11 10 15 15 H 1.08992 * 115.55643 * 328.18809 * 14 12 11 16 16 C 1.53069 * 117.50645 * 182.47608 * 14 12 11 17 17 C 1.52696 * 59.93450 * 252.53501 * 16 14 12 18 18 C 1.53255 * 117.87565 * 107.77398 * 17 16 14 19 19 C 1.53331 * 108.48889 * 196.24998 * 18 17 16 20 20 O 1.42874 * 109.31828 * 306.04117 * 19 18 17 21 21 C 1.42860 * 114.53312 * 64.36051 * 20 19 18 22 22 C 1.53244 * 117.88249 * 252.22430 * 17 16 14 23 23 C 1.52996 * 117.52128 * 231.84241 * 9 7 2 24 24 C 1.52994 * 60.00080 * 107.47968 * 23 9 7 25 25 H 0.96996 * 119.99901 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.47259 * 273.37931 * 10 9 7 27 27 H 1.09001 * 109.46773 * 153.38055 * 10 9 7 28 28 H 1.08997 * 117.50762 * 0.02562 * 16 14 12 29 29 H 1.09003 * 117.50196 * 145.03009 * 16 14 12 30 30 H 1.09003 * 109.63148 * 315.94861 * 18 17 16 31 31 H 1.08995 * 109.63450 * 76.54804 * 18 17 16 32 32 H 1.08994 * 109.49694 * 186.08634 * 19 18 17 33 33 H 1.09000 * 109.49406 * 65.99213 * 19 18 17 34 34 H 1.09003 * 109.49945 * 175.68440 * 21 20 19 35 35 H 1.09004 * 109.49878 * 55.58812 * 21 20 19 36 36 H 1.09000 * 109.63310 * 283.45193 * 22 17 16 37 37 H 1.08996 * 109.63558 * 44.05796 * 22 17 16 38 38 H 1.09004 * 117.50220 * 214.97421 * 23 9 7 39 39 H 1.09004 * 117.49601 * 359.97438 * 23 9 7 40 40 H 1.09001 * 117.49936 * 252.51164 * 24 23 9 41 41 H 1.09000 * 117.49980 * 107.49054 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5097 2.0389 -1.4000 5 1 1.4401 2.6565 0.6869 6 1 3.5401 1.4441 0.7131 7 6 2.0046 -1.1940 0.0005 8 1 1.4653 -2.1289 0.0391 9 6 3.5106 -1.1945 -0.0527 10 6 4.2187 -1.0732 1.2982 11 8 3.4314 -1.7412 2.3190 12 6 3.8679 -1.6459 3.5848 13 8 4.8546 -0.9953 3.8362 14 6 3.1310 -2.3553 4.6914 15 1 2.0545 -2.4534 4.5520 16 6 3.6439 -2.1608 6.1204 17 6 3.8569 -3.4934 5.4059 18 6 5.2762 -3.8391 4.9423 19 6 5.1900 -4.9804 3.9220 20 8 4.4602 -6.0689 4.4910 21 6 3.0925 -5.7777 4.7834 22 6 3.0248 -4.6948 5.8669 23 6 4.1797 -2.0552 -1.1262 24 6 4.1750 -0.5311 -1.2607 25 1 -0.4850 0.8400 -0.0004 26 1 4.3303 -0.0202 1.5566 27 1 5.2025 -1.5382 1.2358 28 1 4.5141 -1.5195 6.2600 29 1 2.9047 -2.1308 6.9209 30 1 5.7324 -2.9654 4.4768 31 1 5.8736 -4.1562 5.7970 32 1 6.1950 -5.3126 3.6620 33 1 4.6792 -4.6291 3.0255 34 1 2.5964 -6.6805 5.1399 35 1 2.5955 -5.4210 3.8812 36 1 3.4305 -5.0848 6.8003 37 1 1.9892 -4.3883 6.0140 38 1 5.1244 -2.5350 -0.8701 39 1 3.5306 -2.6216 -1.7940 40 1 3.5228 -0.0947 -2.0171 41 1 5.1166 -0.0082 -1.0931 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261588655.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:47 Heat of formation + Delta-G solvation = -83.301074 kcal Electronic energy + Delta-G solvation = -22896.349130 eV Core-core repulsion = 19550.088442 eV Total energy + Delta-G solvation = -3346.260688 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.65662 -39.12321 -37.32827 -36.41681 -35.28238 -32.10282 -31.33233 -30.29756 -27.59490 -25.53347 -24.35012 -23.82074 -22.80985 -21.72905 -20.35453 -19.23570 -18.76796 -17.34249 -16.65041 -16.35466 -16.08776 -15.79675 -15.39175 -14.97632 -14.84822 -14.20931 -13.99936 -13.55075 -13.28666 -12.96418 -12.72839 -12.63369 -12.43883 -12.19351 -11.83726 -11.43527 -11.19836 -11.16634 -10.87817 -10.85073 -10.59039 -10.45523 -10.32029 -10.17047 -9.93542 -9.90271 -9.64043 -9.34194 -9.12880 -8.60013 -8.52377 -6.11925 -4.13359 2.44946 3.13031 3.25845 3.35636 3.37151 3.68878 3.81893 4.39353 4.46425 4.57493 4.66632 4.70555 4.81071 4.91836 5.14500 5.16077 5.27854 5.40330 5.44058 5.51741 5.57025 5.63449 5.65947 5.67909 5.78773 5.84951 5.94169 5.95558 6.01096 6.04961 6.08751 6.10586 6.29574 6.38833 6.60249 6.79627 7.02563 7.15234 7.17176 7.67735 8.30506 8.50114 8.92333 9.50720 11.00142 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.020731 B = 0.005349 C = 0.005111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.318765 B = 5233.363086 C = 5476.721212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.079 3.921 3 Si 0.873 3.127 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.262 1.262 7 C -0.472 4.472 8 H 0.081 0.919 9 C -0.007 4.007 10 C 0.102 3.898 11 O -0.310 6.310 12 C 0.485 3.515 13 O -0.527 6.527 14 C -0.157 4.157 15 H 0.136 0.864 16 C -0.137 4.137 17 C -0.097 4.097 18 C -0.130 4.130 19 C 0.061 3.939 20 O -0.384 6.384 21 C 0.059 3.941 22 C -0.116 4.116 23 C -0.176 4.176 24 C -0.193 4.193 25 H 0.264 0.736 26 H 0.066 0.934 27 H 0.049 0.951 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.056 0.944 34 H 0.095 0.905 35 H 0.059 0.941 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.859 -7.863 10.592 15.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.123 4.123 3 Si 0.701 3.299 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.186 1.186 7 C -0.509 4.509 8 H 0.099 0.901 9 C -0.008 4.008 10 C 0.028 3.972 11 O -0.224 6.224 12 C 0.329 3.671 13 O -0.419 6.419 14 C -0.176 4.176 15 H 0.154 0.846 16 C -0.174 4.174 17 C -0.097 4.097 18 C -0.167 4.167 19 C -0.015 4.015 20 O -0.303 6.303 21 C -0.017 4.017 22 C -0.153 4.153 23 C -0.213 4.213 24 C -0.231 4.231 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.127 0.873 29 H 0.126 0.874 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.113 0.887 33 H 0.075 0.925 34 H 0.113 0.887 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.042 -7.721 10.632 15.405 hybrid contribution 0.282 1.580 -0.149 1.612 sum 8.324 -6.141 10.482 14.727 Atomic orbital electron populations 1.69880 1.06198 1.26988 1.50349 1.24927 0.94580 0.98754 0.94089 0.86995 0.80505 0.83833 0.78576 1.20162 1.21889 1.18642 1.20105 0.85664 0.94631 1.50498 0.90119 1.19338 0.96114 1.00697 0.84628 1.22930 0.91302 0.96111 0.86846 1.86646 1.52791 1.67956 1.14989 1.22466 0.82275 0.78106 0.84219 1.90579 1.26748 1.40020 1.84545 1.21948 1.00955 1.03422 0.91281 0.84569 1.23140 1.03624 0.98257 0.92340 1.21489 0.96361 0.89983 1.01891 1.21974 0.94150 1.00167 1.00407 1.22617 0.96906 0.87020 0.94983 1.87829 1.22839 1.36867 1.82729 1.22638 0.83277 0.98298 0.97526 1.21856 0.99733 0.94149 0.99605 1.22926 1.00909 0.92603 1.04891 1.23018 1.01345 0.95584 1.03124 0.92584 0.91637 0.93305 0.87264 0.87425 0.89611 0.90167 0.88747 0.92525 0.88699 0.92313 0.90148 0.90168 0.90818 0.89085 0.88788 0.90798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.94 13.96 55.43 0.77 -26.17 16 2 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 3 Si 0.87 21.66 25.28 -169.99 -4.30 17.36 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.26 -6.25 5.21 56.52 0.29 -5.96 16 7 C -0.47 -12.99 8.67 -34.44 -0.30 -13.29 16 8 H 0.08 2.43 8.06 -52.48 -0.42 2.01 16 9 C -0.01 -0.16 1.29 -155.66 -0.20 -0.36 16 10 C 0.10 2.23 5.40 37.16 0.20 2.43 16 11 O -0.31 -6.81 9.46 -39.26 -0.37 -7.18 16 12 C 0.49 9.27 6.71 36.01 0.24 9.51 16 13 O -0.53 -10.70 14.62 -18.75 -0.27 -10.98 16 14 C -0.16 -2.34 6.00 -91.87 -0.55 -2.89 16 15 H 0.14 1.95 8.14 -51.93 -0.42 1.52 16 16 C -0.14 -1.64 9.51 -26.85 -0.26 -1.90 16 17 C -0.10 -1.19 2.03 -154.54 -0.31 -1.50 16 18 C -0.13 -1.63 5.58 -26.43 -0.15 -1.78 16 19 C 0.06 0.78 6.85 37.33 0.26 1.03 16 20 O -0.38 -5.00 10.69 -35.23 -0.38 -5.38 16 21 C 0.06 0.66 6.85 37.33 0.26 0.91 16 22 C -0.12 -1.17 5.92 -26.43 -0.16 -1.33 16 23 C -0.18 -3.50 9.88 -26.74 -0.26 -3.76 16 24 C -0.19 -4.02 7.72 -26.74 -0.21 -4.23 16 25 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.07 1.51 6.07 -51.93 -0.32 1.19 16 27 H 0.05 0.96 7.89 -51.93 -0.41 0.55 16 28 H 0.11 1.40 7.68 -51.93 -0.40 1.00 16 29 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.09 1.24 5.92 -51.93 -0.31 0.93 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 38 H 0.07 1.27 8.05 -51.93 -0.42 0.86 16 39 H 0.09 1.81 8.14 -51.93 -0.42 1.38 16 40 H 0.09 2.03 7.40 -51.93 -0.38 1.65 16 41 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 330.16 15.07 4.98 4.98 Total: -1.00 -31.25 330.16 -7.65 -38.90 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -6.55 Total: 3.47 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -1.54 Total: -15.00 kcal Atomic # 7 Polarization: -26.94 SS G_CDS: 0.77 Total: -26.17 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -1.02 Total: -23.54 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.30 Total: 17.36 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.25 -7.65 -38.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261588655.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.396 kcal (2) G-P(sol) polarization free energy of solvation -31.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds