Wall clock time and date at job start Tue Mar 31 2020 01:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99843 * 2 1 4 4 H 1.48504 * 109.47170 * 269.38186 * 3 2 1 5 5 H 1.48507 * 109.47275 * 29.37929 * 3 2 1 6 6 H 1.48498 * 109.47429 * 149.37911 * 3 2 1 7 7 C 1.37871 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99892 * 357.66198 * 7 2 1 9 9 C 1.50697 * 120.00076 * 177.66171 * 7 2 1 10 10 C 1.53005 * 115.54793 * 86.13962 * 9 7 2 11 11 O 1.45197 * 109.46928 * 33.38230 * 10 9 7 12 12 C 1.34229 * 116.99726 * 184.58066 * 11 10 9 13 13 O 1.20831 * 119.99999 * 1.96207 * 12 11 10 14 14 C 1.50701 * 119.99952 * 182.23831 * 12 11 10 15 15 H 1.08992 * 115.55643 * 328.18809 * 14 12 11 16 16 C 1.53069 * 117.50645 * 182.47608 * 14 12 11 17 17 C 1.52696 * 59.93450 * 252.53501 * 16 14 12 18 18 C 1.53255 * 117.87565 * 107.77398 * 17 16 14 19 19 C 1.53331 * 108.48889 * 196.24998 * 18 17 16 20 20 O 1.42874 * 109.31828 * 306.04117 * 19 18 17 21 21 C 1.42860 * 114.53312 * 64.36051 * 20 19 18 22 22 C 1.53244 * 117.88249 * 252.22430 * 17 16 14 23 23 C 1.52996 * 117.52128 * 231.84241 * 9 7 2 24 24 C 1.52994 * 60.00080 * 107.47968 * 23 9 7 25 25 H 0.96996 * 119.99901 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.47259 * 273.37931 * 10 9 7 27 27 H 1.09001 * 109.46773 * 153.38055 * 10 9 7 28 28 H 1.08997 * 117.50762 * 0.02562 * 16 14 12 29 29 H 1.09003 * 117.50196 * 145.03009 * 16 14 12 30 30 H 1.09003 * 109.63148 * 315.94861 * 18 17 16 31 31 H 1.08995 * 109.63450 * 76.54804 * 18 17 16 32 32 H 1.08994 * 109.49694 * 186.08634 * 19 18 17 33 33 H 1.09000 * 109.49406 * 65.99213 * 19 18 17 34 34 H 1.09003 * 109.49945 * 175.68440 * 21 20 19 35 35 H 1.09004 * 109.49878 * 55.58812 * 21 20 19 36 36 H 1.09000 * 109.63310 * 283.45193 * 22 17 16 37 37 H 1.08996 * 109.63558 * 44.05796 * 22 17 16 38 38 H 1.09004 * 117.50220 * 214.97421 * 23 9 7 39 39 H 1.09004 * 117.49601 * 359.97438 * 23 9 7 40 40 H 1.09001 * 117.49936 * 252.51164 * 24 23 9 41 41 H 1.09000 * 117.49980 * 107.49054 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5097 2.0389 -1.4000 5 1 1.4401 2.6565 0.6869 6 1 3.5401 1.4441 0.7131 7 6 2.0046 -1.1940 0.0005 8 1 1.4653 -2.1289 0.0391 9 6 3.5106 -1.1945 -0.0527 10 6 4.2187 -1.0732 1.2982 11 8 3.4314 -1.7412 2.3190 12 6 3.8679 -1.6459 3.5848 13 8 4.8546 -0.9953 3.8362 14 6 3.1310 -2.3553 4.6914 15 1 2.0545 -2.4534 4.5520 16 6 3.6439 -2.1608 6.1204 17 6 3.8569 -3.4934 5.4059 18 6 5.2762 -3.8391 4.9423 19 6 5.1900 -4.9804 3.9220 20 8 4.4602 -6.0689 4.4910 21 6 3.0925 -5.7777 4.7834 22 6 3.0248 -4.6948 5.8669 23 6 4.1797 -2.0552 -1.1262 24 6 4.1750 -0.5311 -1.2607 25 1 -0.4850 0.8400 -0.0004 26 1 4.3303 -0.0202 1.5566 27 1 5.2025 -1.5382 1.2358 28 1 4.5141 -1.5195 6.2600 29 1 2.9047 -2.1308 6.9209 30 1 5.7324 -2.9654 4.4768 31 1 5.8736 -4.1562 5.7970 32 1 6.1950 -5.3126 3.6620 33 1 4.6792 -4.6291 3.0255 34 1 2.5964 -6.6805 5.1399 35 1 2.5955 -5.4210 3.8812 36 1 3.4305 -5.0848 6.8003 37 1 1.9892 -4.3883 6.0140 38 1 5.1244 -2.5350 -0.8701 39 1 3.5306 -2.6216 -1.7940 40 1 3.5228 -0.0947 -2.0171 41 1 5.1166 -0.0082 -1.0931 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261588655.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:46 Heat of formation + Delta-G solvation = -101.870504 kcal Electronic energy + Delta-G solvation = -22897.154361 eV Core-core repulsion = 19550.088442 eV Total energy + Delta-G solvation = -3347.065919 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.95146 -40.36570 -38.88512 -37.68501 -36.81449 -34.25646 -32.24779 -31.29496 -29.23052 -27.54231 -25.69194 -24.76564 -23.78721 -23.36809 -21.61928 -21.07861 -19.94851 -18.89472 -18.37759 -17.63158 -17.40350 -17.05439 -16.75174 -16.63698 -15.92688 -15.70436 -15.24312 -14.87166 -14.71674 -14.36725 -14.30690 -14.18427 -13.77805 -13.35622 -13.13442 -13.03973 -12.71607 -12.35782 -12.32821 -12.17844 -12.08435 -11.90847 -11.68779 -11.60028 -11.45873 -11.37481 -11.07427 -10.97048 -10.70014 -10.31874 -10.30723 -8.30735 -6.35410 1.04082 1.28704 1.32329 1.40786 1.72293 2.32007 2.61096 2.89493 3.03140 3.07229 3.43607 3.54093 3.65242 3.76036 3.89486 4.00741 4.02653 4.16047 4.22150 4.32441 4.33650 4.42875 4.47287 4.59097 4.61911 4.69760 4.74133 4.77020 4.79138 4.86741 4.93131 4.97998 5.05474 5.12454 5.15153 5.19239 5.41788 5.59241 5.66306 6.21143 6.28729 6.68053 6.82061 7.31737 8.85204 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.020731 B = 0.005349 C = 0.005111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.318765 B = 5233.363086 C = 5476.721212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.025 3.975 3 Si 0.927 3.073 4 H -0.259 1.259 5 H -0.298 1.298 6 H -0.246 1.246 7 C -0.467 4.467 8 H 0.035 0.965 9 C -0.043 4.043 10 C 0.107 3.893 11 O -0.337 6.337 12 C 0.481 3.519 13 O -0.543 6.543 14 C -0.186 4.186 15 H 0.137 0.863 16 C -0.117 4.117 17 C -0.086 4.086 18 C -0.128 4.128 19 C 0.062 3.938 20 O -0.393 6.393 21 C 0.052 3.948 22 C -0.110 4.110 23 C -0.156 4.156 24 C -0.183 4.183 25 H 0.265 0.735 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.101 0.899 29 H 0.140 0.860 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.032 0.968 34 H 0.120 0.880 35 H 0.039 0.961 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.801 -8.168 11.933 17.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.172 4.172 3 Si 0.752 3.248 4 H -0.183 1.183 5 H -0.225 1.225 6 H -0.170 1.170 7 C -0.505 4.505 8 H 0.053 0.947 9 C -0.043 4.043 10 C 0.033 3.967 11 O -0.252 6.252 12 C 0.327 3.673 13 O -0.436 6.436 14 C -0.205 4.205 15 H 0.155 0.845 16 C -0.153 4.153 17 C -0.087 4.087 18 C -0.166 4.166 19 C -0.014 4.014 20 O -0.312 6.312 21 C -0.024 4.024 22 C -0.147 4.147 23 C -0.193 4.193 24 C -0.220 4.220 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.120 0.880 29 H 0.158 0.842 30 H 0.083 0.917 31 H 0.118 0.882 32 H 0.128 0.872 33 H 0.051 0.949 34 H 0.138 0.862 35 H 0.058 0.942 36 H 0.120 0.880 37 H 0.114 0.886 38 H 0.126 0.874 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 10.006 -8.041 11.968 17.551 hybrid contribution -0.344 1.548 -0.558 1.681 sum 9.662 -6.493 11.411 16.301 Atomic orbital electron populations 1.70021 1.07991 1.27823 1.52729 1.25688 0.95187 1.02269 0.94078 0.86105 0.79735 0.79417 0.79527 1.18334 1.22472 1.17012 1.20202 0.88384 0.92730 1.49161 0.94709 1.19291 0.93722 1.04849 0.86478 1.22801 0.92164 0.95620 0.86090 1.86654 1.53697 1.68397 1.16416 1.23218 0.82307 0.77872 0.83927 1.90550 1.27613 1.40853 1.84552 1.22071 1.00809 1.06116 0.91510 0.84549 1.23293 1.03639 0.97432 0.90942 1.21688 0.96071 0.90640 1.00278 1.21959 0.94555 0.99195 1.00870 1.22608 0.97451 0.87223 0.94155 1.87818 1.23685 1.37031 1.82687 1.22825 0.82424 0.99892 0.97279 1.21905 1.00423 0.92591 0.99799 1.22990 1.01580 0.92446 1.02261 1.23070 1.01870 0.96440 1.00651 0.92621 0.93018 0.90930 0.88038 0.84227 0.91694 0.88237 0.87178 0.94924 0.86234 0.94220 0.88012 0.88596 0.87421 0.89689 0.89864 0.87732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.97 13.96 21.45 0.30 -58.67 16 2 C 0.03 1.46 5.47 84.65 0.46 1.93 16 3 Si 0.93 44.74 25.28 68.60 1.73 46.47 16 4 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 5 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 6 H -0.25 -11.18 5.21 99.48 0.52 -10.67 16 7 C -0.47 -26.54 8.67 25.60 0.22 -26.32 16 8 H 0.03 2.22 8.06 -2.91 -0.02 2.20 16 9 C -0.04 -1.95 1.29 -52.93 -0.07 -2.01 16 10 C 0.11 4.61 5.40 71.98 0.39 5.00 16 11 O -0.34 -15.09 9.46 -51.41 -0.49 -15.58 16 12 C 0.48 18.50 6.71 71.24 0.48 18.98 16 13 O -0.54 -21.97 14.62 21.95 0.32 -21.65 16 14 C -0.19 -5.45 6.00 -11.61 -0.07 -5.51 16 15 H 0.14 3.92 8.14 -2.39 -0.02 3.90 16 16 C -0.12 -2.54 9.51 30.52 0.29 -2.25 16 17 C -0.09 -1.96 2.03 -52.20 -0.11 -2.07 16 18 C -0.13 -3.04 5.58 30.79 0.17 -2.87 16 19 C 0.06 1.53 6.85 72.09 0.49 2.02 16 20 O -0.39 -9.63 10.69 -148.98 -1.59 -11.23 16 21 C 0.05 1.07 6.85 72.09 0.49 1.56 16 22 C -0.11 -1.91 5.92 30.79 0.18 -1.73 16 23 C -0.16 -5.89 9.88 30.59 0.30 -5.59 16 24 C -0.18 -7.18 7.72 30.59 0.24 -6.94 16 25 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 26 H 0.05 2.33 6.07 -2.39 -0.01 2.31 16 27 H 0.07 2.72 7.89 -2.39 -0.02 2.70 16 28 H 0.10 2.42 7.68 -2.39 -0.02 2.40 16 29 H 0.14 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.06 1.83 5.92 -2.39 -0.01 1.82 16 31 H 0.10 1.97 8.14 -2.39 -0.02 1.96 16 32 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.10 1.40 8.08 -2.39 -0.02 1.38 16 38 H 0.11 3.35 8.05 -2.38 -0.02 3.33 16 39 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 40 H 0.08 3.44 7.40 -2.39 -0.02 3.43 16 41 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 Total: -1.00 -70.12 330.16 4.57 -65.54 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: 0.82 Total: 20.91 kcal Atomic # 6 Polarization: -29.29 SS G_CDS: 3.48 Total: -25.81 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: 0.30 Total: -58.67 kcal Atomic # 8 Polarization: -46.69 SS G_CDS: -1.76 Total: -48.45 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.73 Total: 46.47 kcal Total: -70.12 4.57 -65.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261588655.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.330 kcal (2) G-P(sol) polarization free energy of solvation -70.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds