Wall clock time and date at job start Tue Mar 31 2020 01:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.33624 * 125.80470 * 2 1 4 4 C 1.34220 * 110.91856 * 179.97438 * 3 2 1 5 5 C 1.50708 * 125.42780 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47141 * 240.02510 * 5 4 3 7 7 C 1.52992 * 109.47025 * 120.02117 * 5 4 3 8 8 C 1.53006 * 109.46735 * 0.02562 * 5 4 3 9 9 C 1.34154 * 109.14651 * 0.22640 * 4 3 2 10 10 C 1.36495 * 125.80630 * 179.97438 * 2 1 3 11 11 C 1.47230 * 127.20245 * 0.02758 * 10 2 1 12 12 O 1.21540 * 119.99869 * 359.97438 * 11 10 2 13 13 O 1.34765 * 120.00177 * 179.97438 * 11 10 2 14 14 C 1.45205 * 117.00330 * 179.97438 * 13 11 10 15 15 H 1.09001 * 109.46558 * 29.99894 * 14 13 11 16 16 C 1.52999 * 109.46888 * 270.00220 * 14 13 11 17 17 C 1.50695 * 109.47024 * 150.00118 * 14 13 11 18 18 H 1.07998 * 120.00381 * 0.02562 * 17 14 13 19 19 C 1.37885 * 119.99797 * 180.02562 * 17 14 13 20 20 N 1.31517 * 119.99668 * 359.97438 * 19 17 14 21 21 Si 1.86796 * 119.99779 * 179.97438 * 19 17 14 22 22 H 1.48507 * 109.47169 * 90.00475 * 21 19 17 23 23 H 1.48509 * 109.46968 * 209.99864 * 21 19 17 24 24 H 1.48491 * 109.47523 * 329.99968 * 21 19 17 25 25 H 1.09002 * 109.46606 * 0.02758 * 1 2 3 26 26 H 1.08998 * 109.46708 * 120.02388 * 1 2 3 27 27 H 1.08997 * 109.47135 * 240.03021 * 1 2 3 28 28 H 1.09002 * 109.47153 * 299.99670 * 6 5 4 29 29 H 1.09001 * 109.46832 * 179.97438 * 6 5 4 30 30 H 1.09004 * 109.47261 * 59.99842 * 6 5 4 31 31 H 1.09001 * 109.47066 * 180.02562 * 7 5 4 32 32 H 1.08996 * 109.47747 * 300.00019 * 7 5 4 33 33 H 1.09002 * 109.47103 * 60.00431 * 7 5 4 34 34 H 1.08993 * 109.46955 * 300.00223 * 8 5 4 35 35 H 1.09000 * 109.47050 * 60.00052 * 8 5 4 36 36 H 1.09001 * 109.47002 * 179.97438 * 8 5 4 37 37 H 1.08005 * 127.02745 * 179.76818 * 9 4 3 38 38 H 1.08999 * 109.47157 * 299.99775 * 16 14 13 39 39 H 1.09006 * 109.47171 * 59.99973 * 16 14 13 40 40 H 1.08999 * 109.47140 * 179.97438 * 16 14 13 41 41 H 0.96996 * 119.99509 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2888 1.0837 0.0000 4 6 3.5860 0.7389 0.0006 5 6 4.7457 1.7013 0.0002 6 6 5.5987 1.4715 -1.2490 7 6 5.5987 1.4724 1.2495 8 6 4.2169 3.1371 -0.0003 9 6 3.6856 -0.5989 -0.0041 10 6 2.3056 -1.1070 0.0005 11 6 1.8754 -2.5150 0.0006 12 8 0.6912 -2.7886 0.0006 13 8 2.7946 -3.5005 0.0006 14 6 2.2982 -4.8651 0.0012 15 1 1.3375 -4.9023 -0.5123 16 6 2.1244 -5.3438 1.4439 17 6 3.2826 -5.7580 -0.7092 18 1 4.1906 -5.3417 -1.1198 19 6 3.0239 -7.1065 -0.8351 20 7 1.9183 -7.6134 -0.3347 21 14 4.2437 -8.2132 -1.7163 22 1 5.2254 -8.7460 -0.7376 23 1 3.5179 -9.3413 -2.3535 24 1 4.9575 -7.4323 -2.7583 25 1 -0.3632 1.0277 -0.0005 26 1 -0.3633 -0.5142 -0.8898 27 1 -0.3633 -0.5133 0.8902 28 1 5.9754 0.4486 -1.2486 29 1 6.4373 2.1679 -1.2494 30 1 4.9910 1.6346 -2.1391 31 1 6.4373 2.1688 1.2494 32 1 4.9911 1.6362 2.1394 33 1 5.9754 0.4496 1.2498 34 1 3.6092 3.3001 -0.8902 35 1 3.6093 3.3007 0.8897 36 1 5.0557 3.8332 -0.0001 37 1 4.5938 -1.1835 -0.0084 38 1 3.0851 -5.3064 1.9574 39 1 1.4124 -4.6979 1.9578 40 1 1.7513 -6.3679 1.4445 41 1 1.7362 -8.5620 -0.4236 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263373623.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:02 Heat of formation + Delta-G solvation = -98.514334 kcal Electronic energy + Delta-G solvation = -22166.402510 eV Core-core repulsion = 18819.482126 eV Total energy + Delta-G solvation = -3346.920384 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.55098 -39.13682 -37.12501 -35.62302 -33.25876 -32.82619 -31.31937 -29.53984 -27.54811 -27.47068 -26.66985 -25.29243 -23.69414 -21.80937 -20.87631 -20.02286 -18.54201 -17.00913 -16.51498 -16.33010 -15.98924 -15.07177 -14.77585 -14.69956 -14.31889 -14.17582 -14.08554 -13.11642 -13.05693 -12.88801 -12.79136 -12.48179 -12.41346 -12.17255 -11.89018 -11.88404 -11.81385 -11.30777 -11.23384 -11.20291 -11.05192 -10.98942 -10.80029 -10.35517 -10.25612 -9.68462 -9.56403 -9.46948 -8.87225 -8.46949 -8.28910 -6.16112 -4.22559 1.51424 2.18470 2.72757 3.26096 3.31304 3.35451 3.72179 3.77195 4.30364 4.37816 4.59931 4.71662 4.87353 5.02744 5.16809 5.24958 5.35592 5.41179 5.50170 5.53208 5.56367 5.62262 5.64565 5.66554 5.82770 5.84478 5.94400 6.01865 6.08470 6.16492 6.25916 6.49774 6.68473 6.92822 6.95211 7.16267 7.22981 7.62435 7.75980 7.96503 8.17326 8.68975 8.93549 9.42676 10.91512 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.020996 B = 0.004249 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.297752 B = 6587.617779 C = 7469.081544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.069 3.931 3 O -0.170 6.170 4 C -0.016 4.016 5 C 0.017 3.983 6 C -0.142 4.142 7 C -0.141 4.141 8 C -0.143 4.143 9 C -0.154 4.154 10 C -0.215 4.215 11 C 0.527 3.473 12 O -0.523 6.523 13 O -0.348 6.348 14 C 0.215 3.785 15 H 0.047 0.953 16 C -0.154 4.154 17 C -0.519 4.519 18 H 0.068 0.932 19 C 0.062 3.938 20 N -0.890 5.890 21 Si 0.912 3.088 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 H 0.074 0.926 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.160 0.840 38 H 0.036 0.964 39 H 0.016 0.984 40 H 0.099 0.901 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.224 19.675 1.332 20.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.016 3.984 3 O -0.067 6.067 4 C -0.064 4.064 5 C 0.017 3.983 6 C -0.199 4.199 7 C -0.198 4.198 8 C -0.200 4.200 9 C -0.173 4.173 10 C -0.218 4.218 11 C 0.372 3.628 12 O -0.416 6.416 13 O -0.264 6.264 14 C 0.163 3.837 15 H 0.065 0.935 16 C -0.212 4.212 17 C -0.557 4.557 18 H 0.087 0.913 19 C -0.140 4.140 20 N -0.528 5.528 21 Si 0.739 3.261 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.196 1.196 25 H 0.093 0.907 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.177 0.823 38 H 0.055 0.945 39 H 0.035 0.965 40 H 0.118 0.882 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.714 19.643 1.347 20.036 hybrid contribution 0.549 -1.028 -0.376 1.225 sum 4.263 18.615 0.971 19.122 Atomic orbital electron populations 1.20462 0.83664 1.03205 1.05400 1.22716 0.93871 0.83006 0.98764 1.83662 1.16590 1.34586 1.71839 1.22068 0.82128 0.94338 1.07910 1.19117 0.89232 0.92628 0.97321 1.21949 0.99139 1.02746 0.96037 1.21944 0.99137 1.02729 0.96031 1.21849 1.01197 0.94238 1.02711 1.22610 0.97074 0.92921 1.04738 1.20515 0.93649 0.91796 1.15809 1.19871 0.84369 0.85561 0.73006 1.90762 1.18383 1.84842 1.47568 1.86561 1.39259 1.18847 1.81769 1.20643 0.96714 0.71624 0.94711 0.93510 1.22159 0.98811 1.03621 0.96603 1.21027 1.06255 0.92074 1.36377 0.91348 1.24884 0.95880 0.97594 0.95614 1.69904 1.24352 1.13586 1.44909 0.86276 0.80523 0.79701 0.79648 1.20361 1.20965 1.19637 0.90744 0.88569 0.88614 0.91604 0.91535 0.92115 0.91535 0.92144 0.91627 0.92115 0.92134 0.91891 0.82261 0.94479 0.96525 0.88240 0.92432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.91 9.14 36.01 0.33 -0.59 16 2 C 0.07 1.08 7.38 -34.93 -0.26 0.82 16 3 O -0.17 -2.43 9.91 7.71 0.08 -2.36 16 4 C -0.02 -0.22 5.67 -35.74 -0.20 -0.43 16 5 C 0.02 0.17 0.92 -155.66 -0.14 0.03 16 6 C -0.14 -1.27 8.34 37.16 0.31 -0.96 16 7 C -0.14 -1.25 8.34 37.15 0.31 -0.94 16 8 C -0.14 -1.22 8.01 37.16 0.30 -0.92 16 9 C -0.15 -2.47 10.23 -37.45 -0.38 -2.86 16 10 C -0.22 -4.02 6.32 -103.30 -0.65 -4.67 16 11 C 0.53 12.04 7.93 34.38 0.27 12.32 16 12 O -0.52 -12.70 14.92 -19.30 -0.29 -12.99 16 13 O -0.35 -8.82 9.78 -40.67 -0.40 -9.21 16 14 C 0.22 5.98 2.56 -27.89 -0.07 5.91 16 15 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 16 C -0.15 -4.03 9.33 37.16 0.35 -3.68 16 17 C -0.52 -14.91 8.90 -34.44 -0.31 -15.21 16 18 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 19 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 20 N -0.89 -25.60 11.32 55.43 0.63 -24.97 16 21 Si 0.91 21.33 29.54 -169.99 -5.02 16.31 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.10 1.28 8.08 -51.93 -0.42 0.86 16 27 H 0.10 1.26 8.08 -51.93 -0.42 0.84 16 28 H 0.06 0.63 7.97 -51.93 -0.41 0.21 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.61 7.98 -51.93 -0.41 0.20 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.16 2.44 8.06 -52.48 -0.42 2.01 16 38 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.10 2.75 6.07 -51.93 -0.32 2.43 16 41 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 346.10 15.07 5.22 5.22 Total: -1.00 -31.64 346.10 -6.58 -38.22 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -6.55 Total: -0.68 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -0.25 Total: -9.54 kcal Atomic # 7 Polarization: -25.60 SS G_CDS: 0.63 Total: -24.97 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.61 Total: -24.56 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.64 -6.58 -38.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263373623.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.296 kcal (2) G-P(sol) polarization free energy of solvation -31.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds