Wall clock time and date at job start Tue Mar 31 2020 01:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.33624 * 125.80470 * 2 1 4 4 C 1.34220 * 110.91856 * 179.97438 * 3 2 1 5 5 C 1.50708 * 125.42780 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47141 * 240.02510 * 5 4 3 7 7 C 1.52992 * 109.47025 * 120.02117 * 5 4 3 8 8 C 1.53006 * 109.46735 * 0.02562 * 5 4 3 9 9 C 1.34154 * 109.14651 * 0.22640 * 4 3 2 10 10 C 1.36495 * 125.80630 * 179.97438 * 2 1 3 11 11 C 1.47230 * 127.20245 * 0.02758 * 10 2 1 12 12 O 1.21540 * 119.99869 * 359.97438 * 11 10 2 13 13 O 1.34765 * 120.00177 * 179.97438 * 11 10 2 14 14 C 1.45205 * 117.00330 * 179.97438 * 13 11 10 15 15 H 1.09001 * 109.46558 * 29.99894 * 14 13 11 16 16 C 1.52999 * 109.46888 * 270.00220 * 14 13 11 17 17 C 1.50695 * 109.47024 * 150.00118 * 14 13 11 18 18 H 1.07998 * 120.00381 * 0.02562 * 17 14 13 19 19 C 1.37885 * 119.99797 * 180.02562 * 17 14 13 20 20 N 1.31517 * 119.99668 * 359.97438 * 19 17 14 21 21 Si 1.86796 * 119.99779 * 179.97438 * 19 17 14 22 22 H 1.48507 * 109.47169 * 90.00475 * 21 19 17 23 23 H 1.48509 * 109.46968 * 209.99864 * 21 19 17 24 24 H 1.48491 * 109.47523 * 329.99968 * 21 19 17 25 25 H 1.09002 * 109.46606 * 0.02758 * 1 2 3 26 26 H 1.08998 * 109.46708 * 120.02388 * 1 2 3 27 27 H 1.08997 * 109.47135 * 240.03021 * 1 2 3 28 28 H 1.09002 * 109.47153 * 299.99670 * 6 5 4 29 29 H 1.09001 * 109.46832 * 179.97438 * 6 5 4 30 30 H 1.09004 * 109.47261 * 59.99842 * 6 5 4 31 31 H 1.09001 * 109.47066 * 180.02562 * 7 5 4 32 32 H 1.08996 * 109.47747 * 300.00019 * 7 5 4 33 33 H 1.09002 * 109.47103 * 60.00431 * 7 5 4 34 34 H 1.08993 * 109.46955 * 300.00223 * 8 5 4 35 35 H 1.09000 * 109.47050 * 60.00052 * 8 5 4 36 36 H 1.09001 * 109.47002 * 179.97438 * 8 5 4 37 37 H 1.08005 * 127.02745 * 179.76818 * 9 4 3 38 38 H 1.08999 * 109.47157 * 299.99775 * 16 14 13 39 39 H 1.09006 * 109.47171 * 59.99973 * 16 14 13 40 40 H 1.08999 * 109.47140 * 179.97438 * 16 14 13 41 41 H 0.96996 * 119.99509 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2888 1.0837 0.0000 4 6 3.5860 0.7389 0.0006 5 6 4.7457 1.7013 0.0002 6 6 5.5987 1.4715 -1.2490 7 6 5.5987 1.4724 1.2495 8 6 4.2169 3.1371 -0.0003 9 6 3.6856 -0.5989 -0.0041 10 6 2.3056 -1.1070 0.0005 11 6 1.8754 -2.5150 0.0006 12 8 0.6912 -2.7886 0.0006 13 8 2.7946 -3.5005 0.0006 14 6 2.2982 -4.8651 0.0012 15 1 1.3375 -4.9023 -0.5123 16 6 2.1244 -5.3438 1.4439 17 6 3.2826 -5.7580 -0.7092 18 1 4.1906 -5.3417 -1.1198 19 6 3.0239 -7.1065 -0.8351 20 7 1.9183 -7.6134 -0.3347 21 14 4.2437 -8.2132 -1.7163 22 1 5.2254 -8.7460 -0.7376 23 1 3.5179 -9.3413 -2.3535 24 1 4.9575 -7.4323 -2.7583 25 1 -0.3632 1.0277 -0.0005 26 1 -0.3633 -0.5142 -0.8898 27 1 -0.3633 -0.5133 0.8902 28 1 5.9754 0.4486 -1.2486 29 1 6.4373 2.1679 -1.2494 30 1 4.9910 1.6346 -2.1391 31 1 6.4373 2.1688 1.2494 32 1 4.9911 1.6362 2.1394 33 1 5.9754 0.4496 1.2498 34 1 3.6092 3.3001 -0.8902 35 1 3.6093 3.3007 0.8897 36 1 5.0557 3.8332 -0.0001 37 1 4.5938 -1.1835 -0.0084 38 1 3.0851 -5.3064 1.9574 39 1 1.4124 -4.6979 1.9578 40 1 1.7513 -6.3679 1.4445 41 1 1.7362 -8.5620 -0.4236 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263373623.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:01 Heat of formation + Delta-G solvation = -115.113228 kcal Electronic energy + Delta-G solvation = -22167.122292 eV Core-core repulsion = 18819.482126 eV Total energy + Delta-G solvation = -3347.640166 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.78693 -41.02690 -37.98708 -37.54320 -35.35336 -34.20222 -32.45778 -31.65695 -28.33171 -28.16416 -27.81589 -27.47506 -25.27683 -23.28974 -22.29646 -21.49770 -20.09610 -18.60832 -18.48148 -17.59682 -17.47295 -16.83371 -16.56636 -16.23172 -15.60518 -15.03450 -14.94801 -14.77530 -14.36339 -14.18104 -14.07796 -13.91211 -13.80545 -13.23441 -13.14983 -13.05872 -13.02042 -12.92132 -12.81985 -12.58005 -12.42916 -12.20063 -12.17174 -11.96222 -11.78030 -11.62152 -11.48830 -11.02958 -10.90374 -10.61417 -9.50265 -8.30711 -6.47817 0.09912 0.92189 1.40175 1.43077 1.51661 1.55833 2.02428 2.05098 2.41171 2.99838 3.27864 3.65472 3.88395 3.93386 3.98693 4.03989 4.23737 4.47721 4.54272 4.55186 4.57155 4.70640 4.75440 4.77145 4.78378 4.84822 4.87645 4.98914 4.99892 5.04495 5.08652 5.15059 5.20679 5.35071 5.39055 5.41052 5.45307 5.58600 5.86605 5.95431 6.03326 6.56552 6.92753 7.23868 8.77443 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.020996 B = 0.004249 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.297752 B = 6587.617779 C = 7469.081544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.088 3.912 3 O -0.160 6.160 4 C 0.004 3.996 5 C 0.015 3.985 6 C -0.141 4.141 7 C -0.141 4.141 8 C -0.141 4.141 9 C -0.177 4.177 10 C -0.258 4.258 11 C 0.521 3.479 12 O -0.547 6.547 13 O -0.358 6.358 14 C 0.218 3.782 15 H 0.010 0.990 16 C -0.141 4.141 17 C -0.550 4.550 18 H 0.065 0.935 19 C 0.018 3.982 20 N -0.916 5.916 21 Si 0.985 3.015 22 H -0.265 1.265 23 H -0.275 1.275 24 H -0.266 1.266 25 H 0.113 0.887 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.055 0.945 29 H 0.094 0.906 30 H 0.055 0.945 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.088 0.912 37 H 0.159 0.841 38 H 0.044 0.956 39 H 0.022 0.978 40 H 0.084 0.916 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.729 21.515 1.091 22.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.035 3.965 3 O -0.056 6.056 4 C -0.044 4.044 5 C 0.015 3.985 6 C -0.198 4.198 7 C -0.198 4.198 8 C -0.198 4.198 9 C -0.196 4.196 10 C -0.260 4.260 11 C 0.369 3.631 12 O -0.440 6.440 13 O -0.274 6.274 14 C 0.165 3.835 15 H 0.027 0.973 16 C -0.199 4.199 17 C -0.587 4.587 18 H 0.083 0.917 19 C -0.182 4.182 20 N -0.554 5.554 21 Si 0.807 3.193 22 H -0.190 1.190 23 H -0.200 1.200 24 H -0.191 1.191 25 H 0.132 0.868 26 H 0.109 0.891 27 H 0.111 0.889 28 H 0.074 0.926 29 H 0.112 0.888 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.107 0.893 37 H 0.176 0.824 38 H 0.063 0.937 39 H 0.041 0.959 40 H 0.103 0.897 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.218 21.511 1.117 22.163 hybrid contribution 0.035 -1.490 -0.292 1.519 sum 5.253 20.021 0.825 20.715 Atomic orbital electron populations 1.20600 0.81701 1.05646 1.04884 1.23138 0.94949 0.82396 0.96033 1.83727 1.16947 1.33739 1.71170 1.22794 0.82547 0.94287 1.04803 1.19398 0.87938 0.92685 0.98457 1.21973 0.99728 1.02971 0.95162 1.21966 0.99709 1.02983 0.95122 1.21859 1.02119 0.93372 1.02417 1.22632 0.96025 0.94075 1.06868 1.20444 0.95903 0.90009 1.19676 1.20528 0.83891 0.86617 0.72060 1.90727 1.19091 1.85363 1.48861 1.86547 1.39977 1.18409 1.82491 1.20402 0.95015 0.73112 0.95019 0.97262 1.21982 0.99219 1.02674 0.95980 1.21268 1.06550 0.93100 1.37826 0.91671 1.25843 0.97766 0.98719 0.95886 1.70015 1.25858 1.14282 1.45234 0.85158 0.78071 0.77452 0.78574 1.19039 1.20035 1.19071 0.86822 0.89099 0.88935 0.92623 0.88774 0.92610 0.88801 0.92513 0.92594 0.92457 0.92386 0.89330 0.82360 0.93711 0.95865 0.89747 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.79 9.14 71.24 0.65 -1.14 16 2 C 0.09 2.72 7.38 25.28 0.19 2.90 16 3 O -0.16 -4.32 9.91 4.68 0.05 -4.27 16 4 C 0.00 0.10 5.67 24.76 0.14 0.24 16 5 C 0.02 0.27 0.92 -52.93 -0.05 0.22 16 6 C -0.14 -2.22 8.34 71.98 0.60 -1.61 16 7 C -0.14 -2.16 8.34 71.98 0.60 -1.56 16 8 C -0.14 -1.95 8.01 71.98 0.58 -1.37 16 9 C -0.18 -5.74 10.23 23.65 0.24 -5.49 16 10 C -0.26 -9.85 6.32 -19.01 -0.12 -9.97 16 11 C 0.52 24.93 7.93 70.19 0.56 25.49 16 12 O -0.55 -27.81 14.92 19.71 0.29 -27.51 16 13 O -0.36 -18.96 9.78 -56.76 -0.55 -19.52 16 14 C 0.22 12.61 2.56 29.85 0.08 12.69 16 15 H 0.01 0.61 7.16 -2.39 -0.02 0.60 16 16 C -0.14 -7.60 9.33 71.98 0.67 -6.93 16 17 C -0.55 -32.41 8.90 25.60 0.23 -32.18 16 18 H 0.07 3.78 7.81 -2.91 -0.02 3.75 16 19 C 0.02 0.99 5.30 84.66 0.45 1.44 16 20 N -0.92 -53.52 11.32 21.45 0.24 -53.28 16 21 Si 0.98 43.62 29.54 68.60 2.03 45.65 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 23 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 24 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 25 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.09 2.39 8.08 -2.39 -0.02 2.37 16 27 H 0.09 2.40 8.08 -2.39 -0.02 2.38 16 28 H 0.05 0.99 7.97 -2.39 -0.02 0.97 16 29 H 0.09 0.97 8.14 -2.39 -0.02 0.96 16 30 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.05 0.97 7.98 -2.39 -0.02 0.95 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16 36 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.16 5.02 8.06 -2.91 -0.02 5.00 16 38 H 0.04 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.02 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.08 4.81 6.07 -2.39 -0.01 4.79 16 41 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -70.21 346.10 7.87 -62.34 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 1.00 Total: 13.87 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: 4.81 Total: -17.28 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: 0.24 Total: -53.28 kcal Atomic # 8 Polarization: -51.09 SS G_CDS: -0.21 Total: -51.31 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -70.21 7.87 -62.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263373623.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.772 kcal (2) G-P(sol) polarization free energy of solvation -70.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds