Wall clock time and date at job start Tue Mar 31 2020 01:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.33630 * 125.80653 * 2 1 4 4 C 1.34230 * 110.92266 * 179.97438 * 3 2 1 5 5 C 1.50697 * 125.42475 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47012 * 239.97400 * 5 4 3 7 7 C 1.53001 * 109.47319 * 359.97438 * 5 4 3 8 8 C 1.53002 * 109.46922 * 119.97755 * 5 4 3 9 9 C 1.34163 * 109.14198 * 359.70713 * 4 3 2 10 10 C 1.36501 * 125.80857 * 179.97438 * 2 1 3 11 11 C 1.47229 * 127.20042 * 359.97438 * 10 2 1 12 12 O 1.21535 * 120.00112 * 0.02562 * 11 10 2 13 13 O 1.34777 * 119.99952 * 179.97438 * 11 10 2 14 14 C 1.45194 * 116.99845 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.47239 * 330.00312 * 14 13 11 16 16 C 1.52997 * 109.47339 * 90.00554 * 14 13 11 17 17 C 1.50708 * 109.47032 * 210.00655 * 14 13 11 18 18 H 1.08000 * 119.99723 * 359.97438 * 17 14 13 19 19 C 1.37873 * 119.99930 * 179.97438 * 17 14 13 20 20 N 1.31509 * 120.00195 * 0.02562 * 19 17 14 21 21 Si 1.86803 * 119.99968 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.46959 * 89.99935 * 21 19 17 23 23 H 1.48491 * 109.47193 * 210.00326 * 21 19 17 24 24 H 1.48498 * 109.47096 * 330.00479 * 21 19 17 25 25 H 1.08993 * 109.47386 * 270.00835 * 1 2 3 26 26 H 1.09002 * 109.47056 * 30.00521 * 1 2 3 27 27 H 1.09003 * 109.47001 * 149.99950 * 1 2 3 28 28 H 1.09001 * 109.46917 * 60.00941 * 6 5 4 29 29 H 1.08995 * 109.46718 * 180.02562 * 6 5 4 30 30 H 1.08994 * 109.47155 * 300.00377 * 6 5 4 31 31 H 1.08999 * 109.46846 * 59.99944 * 7 5 4 32 32 H 1.09002 * 109.46908 * 179.97438 * 7 5 4 33 33 H 1.08998 * 109.46878 * 299.99866 * 7 5 4 34 34 H 1.09000 * 109.46782 * 59.99569 * 8 5 4 35 35 H 1.08995 * 109.47341 * 180.02562 * 8 5 4 36 36 H 1.08997 * 109.46921 * 299.99824 * 8 5 4 37 37 H 1.07999 * 127.02052 * 180.30511 * 9 4 3 38 38 H 1.09002 * 109.47153 * 59.99705 * 16 14 13 39 39 H 1.09001 * 109.46832 * 299.99896 * 16 14 13 40 40 H 1.09004 * 109.47261 * 179.97438 * 16 14 13 41 41 H 0.97006 * 120.00358 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0837 0.0000 4 6 3.5860 0.7390 0.0006 5 6 4.7456 1.7014 0.0002 6 6 5.5994 1.4708 -1.2484 7 6 4.2169 3.1371 -0.0016 8 6 5.5981 1.4733 1.2501 9 6 3.6856 -0.5990 0.0074 10 6 2.3056 -1.1070 0.0005 11 6 1.8754 -2.5150 0.0016 12 8 0.6912 -2.7886 0.0018 13 8 2.7947 -3.5006 0.0015 14 6 2.2983 -4.8650 0.0021 15 1 1.3379 -4.9020 0.5163 16 6 2.1234 -5.3448 -1.4401 17 6 3.2832 -5.7576 0.7125 18 1 4.1915 -5.3410 1.1221 19 6 3.0246 -7.1059 0.8394 20 7 1.9188 -7.6132 0.3402 21 14 4.2457 -8.2123 1.7193 22 1 3.9127 -8.2653 3.1655 23 1 4.1774 -9.5800 1.1451 24 1 5.6177 -7.6710 1.5468 25 1 -0.3634 0.0001 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5139 28 1 4.9921 1.6334 -2.1388 29 1 6.4383 2.1666 -1.2484 30 1 5.9760 0.4480 -1.2471 31 1 3.6087 3.3014 0.8879 32 1 5.0557 3.8332 -0.0014 33 1 3.6096 3.2995 -0.8921 34 1 5.9747 0.4504 1.2513 35 1 6.4365 2.1697 1.2501 36 1 4.9898 1.6376 2.1396 37 1 4.5938 -1.1834 0.0142 38 1 3.0838 -5.3077 -1.9544 39 1 1.4110 -4.6992 -1.9539 40 1 1.7511 -6.3693 -1.4397 41 1 1.7370 -8.5619 0.4292 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263373624.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:04 Heat of formation + Delta-G solvation = -98.316049 kcal Electronic energy + Delta-G solvation = -22168.047982 eV Core-core repulsion = 18821.136196 eV Total energy + Delta-G solvation = -3346.911786 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.54751 -39.15353 -37.12480 -35.64410 -33.26203 -32.82188 -31.30732 -29.54283 -27.54845 -27.47085 -26.67038 -25.29415 -23.69379 -21.80849 -20.87829 -20.02734 -18.56000 -17.01035 -16.51679 -16.32955 -15.99387 -15.07930 -14.77510 -14.70417 -14.32874 -14.18051 -14.07426 -13.11394 -13.05754 -12.90596 -12.79382 -12.48271 -12.41811 -12.15109 -11.90513 -11.88433 -11.81625 -11.29067 -11.23315 -11.21110 -11.04011 -10.98155 -10.82662 -10.33547 -10.26143 -9.66498 -9.56560 -9.48044 -8.87230 -8.47124 -8.29203 -6.16215 -4.22733 1.50925 2.18267 2.73048 3.26095 3.31263 3.35389 3.71435 3.76633 4.30455 4.37724 4.60054 4.71634 4.87923 5.03097 5.16792 5.26688 5.35862 5.41188 5.50667 5.53025 5.56373 5.58111 5.64516 5.66593 5.82783 5.87265 5.95786 6.01998 6.08460 6.16361 6.27463 6.49867 6.68328 6.92591 6.94943 7.15781 7.23639 7.62224 7.75724 7.96183 8.17052 8.68370 8.93016 9.42550 10.91377 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.020993 B = 0.004250 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.456932 B = 6587.143860 C = 7469.285143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.069 3.931 3 O -0.170 6.170 4 C -0.016 4.016 5 C 0.017 3.983 6 C -0.141 4.141 7 C -0.143 4.143 8 C -0.141 4.141 9 C -0.155 4.155 10 C -0.215 4.215 11 C 0.528 3.472 12 O -0.524 6.524 13 O -0.348 6.348 14 C 0.215 3.785 15 H 0.047 0.953 16 C -0.154 4.154 17 C -0.519 4.519 18 H 0.068 0.932 19 C 0.062 3.938 20 N -0.890 5.890 21 Si 0.911 3.089 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.271 1.271 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.109 0.891 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.160 0.840 38 H 0.036 0.964 39 H 0.016 0.984 40 H 0.099 0.901 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.232 19.612 -1.372 20.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.017 3.983 3 O -0.067 6.067 4 C -0.064 4.064 5 C 0.017 3.983 6 C -0.198 4.198 7 C -0.200 4.200 8 C -0.199 4.199 9 C -0.174 4.174 10 C -0.217 4.217 11 C 0.373 3.627 12 O -0.416 6.416 13 O -0.264 6.264 14 C 0.163 3.837 15 H 0.065 0.935 16 C -0.212 4.212 17 C -0.557 4.557 18 H 0.087 0.913 19 C -0.140 4.140 20 N -0.528 5.528 21 Si 0.738 3.262 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.196 1.196 25 H 0.106 0.894 26 H 0.094 0.906 27 H 0.128 0.872 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.177 0.823 38 H 0.055 0.945 39 H 0.035 0.965 40 H 0.118 0.882 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.729 19.578 -1.396 19.979 hybrid contribution 0.540 -1.000 0.416 1.210 sum 4.269 18.578 -0.980 19.087 Atomic orbital electron populations 1.20604 0.83714 1.04948 1.04379 1.22725 0.93860 0.82978 0.98713 1.83660 1.16583 1.34643 1.71850 1.22071 0.82132 0.94335 1.07873 1.19117 0.89237 0.92631 0.97323 1.21944 0.99124 1.02732 0.96038 1.21849 1.01196 0.94236 1.02712 1.21948 0.99144 1.02749 0.96029 1.22611 0.97069 0.92927 1.04758 1.20512 0.93652 0.91786 1.15794 1.19874 0.84352 0.85574 0.72894 1.90738 1.18397 1.84750 1.47744 1.86565 1.39234 1.18854 1.81724 1.20648 0.96721 0.71612 0.94733 0.93503 1.22158 0.98824 1.03628 0.96586 1.21026 1.06241 0.92091 1.36384 0.91346 1.24877 0.95900 0.97584 0.95591 1.69900 1.24425 1.13611 1.44815 0.86278 0.81032 0.79321 0.79533 1.20407 1.20945 1.19602 0.89385 0.90589 0.87223 0.92137 0.91535 0.91630 0.92122 0.91890 0.92128 0.91603 0.91534 0.92120 0.82254 0.94471 0.96510 0.88231 0.92426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 9.89 36.00 0.36 -0.69 16 2 C 0.07 1.10 7.38 -34.94 -0.26 0.84 16 3 O -0.17 -2.45 9.91 7.67 0.08 -2.37 16 4 C -0.02 -0.22 5.67 -35.75 -0.20 -0.42 16 5 C 0.02 0.17 0.92 -155.66 -0.14 0.03 16 6 C -0.14 -1.25 8.34 37.16 0.31 -0.94 16 7 C -0.14 -1.22 8.01 37.16 0.30 -0.92 16 8 C -0.14 -1.27 8.34 37.16 0.31 -0.96 16 9 C -0.15 -2.48 10.23 -37.44 -0.38 -2.86 16 10 C -0.21 -4.01 6.32 -103.30 -0.65 -4.67 16 11 C 0.53 12.04 7.93 34.38 0.27 12.32 16 12 O -0.52 -12.67 14.11 -19.29 -0.27 -12.94 16 13 O -0.35 -8.79 9.78 -40.70 -0.40 -9.19 16 14 C 0.22 5.96 2.56 -27.88 -0.07 5.89 16 15 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 16 C -0.15 -4.02 9.33 37.16 0.35 -3.68 16 17 C -0.52 -14.89 8.90 -34.44 -0.31 -15.20 16 18 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 19 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 20 N -0.89 -25.57 11.32 55.43 0.63 -24.94 16 21 Si 0.91 21.31 29.54 -169.99 -5.02 16.29 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.11 1.62 6.49 -51.93 -0.34 1.28 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.61 7.98 -51.93 -0.41 0.20 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.63 7.97 -51.93 -0.41 0.21 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.16 2.44 8.06 -52.49 -0.42 2.01 16 38 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.10 2.74 6.07 -51.93 -0.32 2.43 16 41 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 344.49 15.07 5.19 5.19 Total: -1.00 -31.51 344.49 -6.49 -38.00 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -6.47 Total: -0.42 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -0.22 Total: -9.61 kcal Atomic # 7 Polarization: -25.57 SS G_CDS: 0.63 Total: -24.94 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.59 Total: -24.50 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.51 -6.49 -38.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263373624.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.320 kcal (2) G-P(sol) polarization free energy of solvation -31.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds