Wall clock time and date at job start Tue Mar 31 2020 01:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.33630 * 125.80653 * 2 1 4 4 C 1.34230 * 110.92266 * 179.97438 * 3 2 1 5 5 C 1.50697 * 125.42475 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47012 * 239.97400 * 5 4 3 7 7 C 1.53001 * 109.47319 * 359.97438 * 5 4 3 8 8 C 1.53002 * 109.46922 * 119.97755 * 5 4 3 9 9 C 1.34163 * 109.14198 * 359.70713 * 4 3 2 10 10 C 1.36501 * 125.80857 * 179.97438 * 2 1 3 11 11 C 1.47229 * 127.20042 * 359.97438 * 10 2 1 12 12 O 1.21535 * 120.00112 * 0.02562 * 11 10 2 13 13 O 1.34777 * 119.99952 * 179.97438 * 11 10 2 14 14 C 1.45194 * 116.99845 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.47239 * 330.00312 * 14 13 11 16 16 C 1.52997 * 109.47339 * 90.00554 * 14 13 11 17 17 C 1.50708 * 109.47032 * 210.00655 * 14 13 11 18 18 H 1.08000 * 119.99723 * 359.97438 * 17 14 13 19 19 C 1.37873 * 119.99930 * 179.97438 * 17 14 13 20 20 N 1.31509 * 120.00195 * 0.02562 * 19 17 14 21 21 Si 1.86803 * 119.99968 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.46959 * 89.99935 * 21 19 17 23 23 H 1.48491 * 109.47193 * 210.00326 * 21 19 17 24 24 H 1.48498 * 109.47096 * 330.00479 * 21 19 17 25 25 H 1.08993 * 109.47386 * 270.00835 * 1 2 3 26 26 H 1.09002 * 109.47056 * 30.00521 * 1 2 3 27 27 H 1.09003 * 109.47001 * 149.99950 * 1 2 3 28 28 H 1.09001 * 109.46917 * 60.00941 * 6 5 4 29 29 H 1.08995 * 109.46718 * 180.02562 * 6 5 4 30 30 H 1.08994 * 109.47155 * 300.00377 * 6 5 4 31 31 H 1.08999 * 109.46846 * 59.99944 * 7 5 4 32 32 H 1.09002 * 109.46908 * 179.97438 * 7 5 4 33 33 H 1.08998 * 109.46878 * 299.99866 * 7 5 4 34 34 H 1.09000 * 109.46782 * 59.99569 * 8 5 4 35 35 H 1.08995 * 109.47341 * 180.02562 * 8 5 4 36 36 H 1.08997 * 109.46921 * 299.99824 * 8 5 4 37 37 H 1.07999 * 127.02052 * 180.30511 * 9 4 3 38 38 H 1.09002 * 109.47153 * 59.99705 * 16 14 13 39 39 H 1.09001 * 109.46832 * 299.99896 * 16 14 13 40 40 H 1.09004 * 109.47261 * 179.97438 * 16 14 13 41 41 H 0.97006 * 120.00358 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0837 0.0000 4 6 3.5860 0.7390 0.0006 5 6 4.7456 1.7014 0.0002 6 6 5.5994 1.4708 -1.2484 7 6 4.2169 3.1371 -0.0016 8 6 5.5981 1.4733 1.2501 9 6 3.6856 -0.5990 0.0074 10 6 2.3056 -1.1070 0.0005 11 6 1.8754 -2.5150 0.0016 12 8 0.6912 -2.7886 0.0018 13 8 2.7947 -3.5006 0.0015 14 6 2.2983 -4.8650 0.0021 15 1 1.3379 -4.9020 0.5163 16 6 2.1234 -5.3448 -1.4401 17 6 3.2832 -5.7576 0.7125 18 1 4.1915 -5.3410 1.1221 19 6 3.0246 -7.1059 0.8394 20 7 1.9188 -7.6132 0.3402 21 14 4.2457 -8.2123 1.7193 22 1 3.9127 -8.2653 3.1655 23 1 4.1774 -9.5800 1.1451 24 1 5.6177 -7.6710 1.5468 25 1 -0.3634 0.0001 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5139 28 1 4.9921 1.6334 -2.1388 29 1 6.4383 2.1666 -1.2484 30 1 5.9760 0.4480 -1.2471 31 1 3.6087 3.3014 0.8879 32 1 5.0557 3.8332 -0.0014 33 1 3.6096 3.2995 -0.8921 34 1 5.9747 0.4504 1.2513 35 1 6.4365 2.1697 1.2501 36 1 4.9898 1.6376 2.1396 37 1 4.5938 -1.1834 0.0142 38 1 3.0838 -5.3077 -1.9544 39 1 1.4110 -4.6992 -1.9539 40 1 1.7511 -6.3693 -1.4397 41 1 1.7370 -8.5619 0.4292 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263373624.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:03 Heat of formation + Delta-G solvation = -114.888408 kcal Electronic energy + Delta-G solvation = -22168.766613 eV Core-core repulsion = 18821.136196 eV Total energy + Delta-G solvation = -3347.630417 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.78409 -41.03669 -37.99042 -37.55482 -35.35524 -34.19638 -32.44952 -31.65626 -28.33320 -28.16456 -27.81725 -27.47438 -25.27292 -23.28994 -22.29267 -21.50975 -20.10373 -18.60798 -18.48572 -17.59046 -17.47283 -16.83653 -16.57094 -16.23361 -15.60713 -15.04489 -14.94690 -14.76597 -14.38847 -14.17721 -14.04953 -13.93032 -13.80775 -13.23981 -13.15054 -13.07260 -13.00746 -12.92104 -12.85005 -12.58074 -12.41110 -12.18105 -12.16356 -11.96205 -11.77527 -11.62599 -11.46316 -11.02265 -10.90343 -10.61895 -9.49942 -8.30610 -6.47774 0.09751 0.92142 1.40179 1.42932 1.51813 1.55901 2.02240 2.05078 2.41206 2.99981 3.28030 3.65049 3.88436 3.93169 3.98626 4.04542 4.24165 4.47545 4.53860 4.56032 4.57164 4.71405 4.75539 4.77109 4.78257 4.85241 4.87609 4.98820 4.99882 5.04945 5.07903 5.16693 5.20794 5.35128 5.39019 5.41063 5.45635 5.58687 5.86844 5.95604 6.03692 6.56517 6.92450 7.23912 8.77520 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.020993 B = 0.004250 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.456932 B = 6587.143860 C = 7469.285143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.089 3.911 3 O -0.160 6.160 4 C 0.004 3.996 5 C 0.015 3.985 6 C -0.141 4.141 7 C -0.140 4.140 8 C -0.141 4.141 9 C -0.177 4.177 10 C -0.258 4.258 11 C 0.522 3.478 12 O -0.547 6.547 13 O -0.357 6.357 14 C 0.217 3.783 15 H 0.010 0.990 16 C -0.141 4.141 17 C -0.550 4.550 18 H 0.065 0.935 19 C 0.018 3.982 20 N -0.916 5.916 21 Si 0.985 3.015 22 H -0.271 1.271 23 H -0.273 1.273 24 H -0.263 1.263 25 H 0.102 0.898 26 H 0.113 0.887 27 H 0.088 0.912 28 H 0.056 0.944 29 H 0.093 0.907 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.159 0.841 38 H 0.044 0.956 39 H 0.022 0.978 40 H 0.084 0.916 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.718 21.498 -1.078 22.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.036 3.964 3 O -0.056 6.056 4 C -0.044 4.044 5 C 0.015 3.985 6 C -0.198 4.198 7 C -0.198 4.198 8 C -0.198 4.198 9 C -0.196 4.196 10 C -0.260 4.260 11 C 0.370 3.630 12 O -0.441 6.441 13 O -0.274 6.274 14 C 0.164 3.836 15 H 0.027 0.973 16 C -0.199 4.199 17 C -0.587 4.587 18 H 0.083 0.917 19 C -0.182 4.182 20 N -0.554 5.554 21 Si 0.807 3.193 22 H -0.197 1.197 23 H -0.198 1.198 24 H -0.187 1.187 25 H 0.121 0.879 26 H 0.131 0.869 27 H 0.107 0.893 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.112 0.888 36 H 0.074 0.926 37 H 0.176 0.824 38 H 0.063 0.937 39 H 0.041 0.959 40 H 0.103 0.897 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.213 21.492 -1.111 22.143 hybrid contribution 0.027 -1.473 0.315 1.507 sum 5.240 20.019 -0.796 20.708 Atomic orbital electron populations 1.20722 0.81759 1.05718 1.05488 1.23146 0.94940 0.82384 0.95971 1.83724 1.16943 1.33767 1.71212 1.22795 0.82541 0.94283 1.04806 1.19398 0.87943 0.92683 0.98460 1.21966 0.99695 1.02983 0.95131 1.21858 1.02116 0.93377 1.02411 1.21972 0.99732 1.02976 0.95152 1.22632 0.96020 0.94077 1.06872 1.20439 0.95892 0.90001 1.19710 1.20531 0.83881 0.86630 0.71975 1.90709 1.19088 1.85281 1.48986 1.86550 1.39959 1.18411 1.82463 1.20406 0.95022 0.73107 0.95036 0.97254 1.21982 0.99231 1.02678 0.95971 1.21269 1.06528 0.93116 1.37825 0.91663 1.25836 0.97792 0.98710 0.95865 1.70012 1.25928 1.14305 1.45144 0.85161 0.78568 0.77254 0.78299 1.19659 1.19760 1.18726 0.87946 0.86860 0.89305 0.92509 0.88801 0.92600 0.92472 0.89328 0.92385 0.92619 0.88776 0.92610 0.82358 0.93704 0.95851 0.89741 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.01 9.89 71.23 0.70 -1.31 16 2 C 0.09 2.75 7.38 25.28 0.19 2.93 16 3 O -0.16 -4.35 9.91 4.53 0.04 -4.30 16 4 C 0.00 0.10 5.67 24.75 0.14 0.24 16 5 C 0.02 0.27 0.92 -52.93 -0.05 0.22 16 6 C -0.14 -2.16 8.34 71.98 0.60 -1.56 16 7 C -0.14 -1.95 8.01 71.98 0.58 -1.37 16 8 C -0.14 -2.22 8.34 71.98 0.60 -1.62 16 9 C -0.18 -5.74 10.23 23.66 0.24 -5.50 16 10 C -0.26 -9.86 6.32 -19.01 -0.12 -9.98 16 11 C 0.52 24.96 7.93 70.19 0.56 25.52 16 12 O -0.55 -27.78 14.11 19.72 0.28 -27.51 16 13 O -0.36 -18.93 9.78 -56.89 -0.56 -19.49 16 14 C 0.22 12.59 2.56 29.85 0.08 12.67 16 15 H 0.01 0.62 7.16 -2.39 -0.02 0.60 16 16 C -0.14 -7.60 9.33 71.98 0.67 -6.93 16 17 C -0.55 -32.39 8.90 25.60 0.23 -32.16 16 18 H 0.07 3.78 7.81 -2.91 -0.02 3.76 16 19 C 0.02 1.00 5.30 84.65 0.45 1.45 16 20 N -0.92 -53.50 11.32 21.44 0.24 -53.25 16 21 Si 0.98 43.60 29.54 68.60 2.03 45.63 16 22 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 23 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 24 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 25 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.09 2.65 6.49 -2.39 -0.02 2.64 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.05 0.97 7.98 -2.39 -0.02 0.95 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16 32 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.05 0.99 7.97 -2.39 -0.02 0.97 16 35 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.16 5.02 8.06 -2.91 -0.02 5.00 16 38 H 0.04 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.08 4.81 6.07 -2.38 -0.01 4.79 16 41 H 0.27 14.75 8.31 -92.70 -0.77 13.98 16 Total: -1.00 -70.12 344.49 7.90 -62.22 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 1.01 Total: 14.11 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: 4.86 Total: -17.41 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: 0.24 Total: -53.25 kcal Atomic # 8 Polarization: -51.06 SS G_CDS: -0.23 Total: -51.30 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -70.12 7.90 -62.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263373624.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.673 kcal (2) G-P(sol) polarization free energy of solvation -70.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds