Wall clock time and date at job start Tue Mar 31 2020 01:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41378 * 126.58058 * 2 1 4 4 C 1.34515 * 106.83926 * 179.97438 * 3 2 1 5 5 O 1.34298 * 108.42045 * 359.74252 * 4 3 2 6 6 C 1.34308 * 109.47698 * 0.43050 * 5 4 3 7 7 C 1.50693 * 125.78813 * 179.82761 * 6 5 4 8 8 C 1.50697 * 109.47486 * 269.69441 * 7 6 5 9 9 O 1.20833 * 119.99747 * 0.02562 * 8 7 6 10 10 O 1.34230 * 120.00262 * 179.72204 * 8 7 6 11 11 C 1.45202 * 116.99836 * 180.27336 * 10 8 7 12 12 C 1.52994 * 109.46919 * 180.02562 * 11 10 8 13 13 C 1.53002 * 109.47208 * 300.00395 * 12 11 10 14 14 C 1.52997 * 109.47257 * 60.00360 * 12 11 10 15 15 C 1.52999 * 109.47236 * 180.02562 * 12 11 10 16 16 C 1.50701 * 109.47172 * 180.02562 * 15 12 11 17 17 H 1.07995 * 120.00097 * 359.97438 * 16 15 12 18 18 C 1.37882 * 119.99941 * 179.97438 * 16 15 12 19 19 N 1.31523 * 120.00025 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00217 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46989 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47302 * 119.99601 * 20 18 16 23 23 H 1.48499 * 109.47252 * 240.00183 * 20 18 16 24 24 H 1.08990 * 109.47338 * 270.04289 * 1 2 3 25 25 H 1.09002 * 109.47047 * 30.03987 * 1 2 3 26 26 H 1.09000 * 109.47579 * 150.03467 * 1 2 3 27 27 H 1.08007 * 126.57882 * 359.97438 * 3 2 1 28 28 H 1.08004 * 125.78732 * 180.02562 * 4 3 2 29 29 H 1.09004 * 109.47069 * 149.69644 * 7 6 5 30 30 H 1.09000 * 109.47237 * 29.70149 * 7 6 5 31 31 H 1.08998 * 109.47630 * 300.00638 * 11 10 8 32 32 H 1.09004 * 109.46770 * 60.01042 * 11 10 8 33 33 H 1.08996 * 109.47459 * 60.00324 * 13 12 11 34 34 H 1.09001 * 109.46957 * 179.97438 * 13 12 11 35 35 H 1.08996 * 109.47234 * 299.99913 * 13 12 11 36 36 H 1.09006 * 109.47128 * 59.99949 * 14 12 11 37 37 H 1.09001 * 109.47549 * 179.97438 * 14 12 11 38 38 H 1.09005 * 109.47490 * 300.00068 * 14 12 11 39 39 H 1.09006 * 109.46823 * 299.99852 * 15 12 11 40 40 H 1.08996 * 109.47249 * 60.00061 * 15 12 11 41 41 H 0.96994 * 120.00123 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1353 0.0000 4 6 3.6157 0.6809 0.0006 5 8 3.5847 -0.6617 0.0066 6 6 2.3085 -1.0802 0.0005 7 6 1.8521 -2.5164 0.0006 8 6 1.7004 -2.9955 -1.4201 9 8 1.9390 -2.2475 -2.3386 10 8 1.3061 -4.2549 -1.6652 11 6 1.1875 -4.6493 -3.0576 12 6 0.7297 -6.1069 -3.1375 13 6 1.7552 -7.0025 -2.4394 14 6 -0.6284 -6.2536 -2.4485 15 6 0.6053 -6.5227 -4.6047 16 6 0.1538 -7.9584 -4.6834 17 1 -0.0259 -8.5183 -3.7776 18 6 -0.0298 -8.5570 -5.9118 19 7 0.1886 -7.8749 -7.0149 20 14 -0.5887 -10.3367 -6.0095 21 1 -0.7640 -10.8765 -4.6371 22 1 -1.8803 -10.4107 -6.7386 23 1 0.4332 -11.1377 -6.7301 24 1 -0.3633 0.0008 1.0276 25 1 -0.3633 0.8896 -0.5145 26 1 -0.3634 -0.8903 -0.5133 27 1 2.0367 2.1690 -0.0004 28 1 4.5060 1.2922 0.0011 29 1 0.8936 -2.5930 0.5141 30 1 2.5900 -3.1321 0.5149 31 1 0.4567 -4.0115 -3.5549 32 1 2.1550 -4.5445 -3.5486 33 1 1.8442 -6.7065 -1.3941 34 1 1.4288 -8.0410 -2.4959 35 1 2.7227 -6.8981 -2.9302 36 1 -1.3590 -5.6155 -2.9459 37 1 -0.9547 -7.2920 -2.5058 38 1 -0.5394 -5.9575 -1.4032 39 1 -0.1251 -5.8847 -5.1024 40 1 1.5730 -6.4184 -5.0952 41 1 0.0591 -8.2958 -7.8791 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263478777.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:57 Heat of formation + Delta-G solvation = -96.729918 kcal Electronic energy + Delta-G solvation = -21769.282978 eV Core-core repulsion = 18422.439972 eV Total energy + Delta-G solvation = -3346.843006 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.77595 -40.21293 -37.26210 -35.40818 -34.46301 -32.49410 -32.25685 -29.23068 -27.38457 -26.74658 -26.41650 -25.87921 -23.11164 -21.76090 -21.14234 -19.68624 -18.27914 -17.63256 -17.14926 -16.40500 -16.35839 -16.12144 -15.44670 -14.70746 -14.55209 -14.09430 -13.56620 -13.49957 -13.29265 -13.04338 -12.89692 -12.77980 -12.50367 -12.29812 -12.11163 -12.06944 -11.63714 -11.26599 -10.98728 -10.82205 -10.61507 -10.51391 -10.31425 -10.30287 -10.19056 -9.75674 -9.74680 -9.23529 -8.94577 -8.54556 -8.37710 -6.01637 -4.02795 1.47313 2.31989 2.35770 2.71202 3.13902 3.30106 3.38151 3.41267 4.33995 4.44333 4.68663 4.72913 4.90345 4.98176 5.11302 5.29357 5.34095 5.45096 5.49254 5.50708 5.59229 5.66380 5.81262 5.85423 5.99450 6.05459 6.18482 6.36882 6.38055 6.50302 6.62363 6.70293 6.80482 6.97181 7.10363 7.10856 7.13007 7.60299 7.71774 7.91722 7.97322 8.38805 9.01875 9.60418 11.10079 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.041674 B = 0.003026 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.722439 B = 9250.037058 C = 9276.580993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.159 4.159 3 C -0.212 4.212 4 C -0.033 4.033 5 O -0.170 6.170 6 C -0.006 4.006 7 C -0.033 4.033 8 C 0.455 3.545 9 O -0.502 6.502 10 O -0.349 6.349 11 C 0.080 3.920 12 C -0.059 4.059 13 C -0.126 4.126 14 C -0.126 4.126 15 C 0.034 3.966 16 C -0.509 4.509 17 H 0.062 0.938 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.890 3.110 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.285 1.285 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.148 0.852 28 H 0.203 0.797 29 H 0.133 0.867 30 H 0.122 0.878 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.039 0.961 34 H 0.066 0.934 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.066 0.934 38 H 0.039 0.961 39 H 0.018 0.982 40 H 0.018 0.982 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.051 14.582 16.913 22.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.160 4.160 3 C -0.231 4.231 4 C -0.100 4.100 5 O -0.066 6.066 6 C -0.056 4.056 7 C -0.070 4.070 8 C 0.297 3.703 9 O -0.389 6.389 10 O -0.265 6.265 11 C 0.007 3.993 12 C -0.059 4.059 13 C -0.183 4.183 14 C -0.183 4.183 15 C -0.003 4.003 16 C -0.547 4.547 17 H 0.080 0.920 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.211 1.211 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.166 0.834 28 H 0.220 0.780 29 H 0.150 0.850 30 H 0.140 0.860 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.085 0.915 38 H 0.058 0.942 39 H 0.037 0.963 40 H 0.036 0.964 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.348 14.555 16.409 22.188 hybrid contribution -0.259 -0.580 -0.517 0.819 sum 3.089 13.976 15.891 21.387 Atomic orbital electron populations 1.20217 0.89145 1.02987 1.01959 1.20206 0.97148 0.91995 1.06685 1.21687 0.92593 0.99757 1.09075 1.23976 0.99778 0.80488 1.05800 1.83988 1.28493 1.22884 1.71262 1.21222 0.81380 0.94829 1.08203 1.19621 1.05235 0.89221 0.92954 1.23271 0.74231 0.81010 0.91826 1.90700 1.45651 1.55988 1.46609 1.86470 1.77789 1.29007 1.33244 1.23532 1.01573 0.97610 0.76604 1.20820 0.95451 0.89229 1.00394 1.21718 0.97983 1.00615 0.98014 1.21717 0.96017 1.02538 0.98028 1.19134 0.97406 0.96721 0.87020 1.21190 1.44854 0.96506 0.92152 0.91994 1.25024 0.95736 0.97891 0.95913 1.69978 1.49523 1.36531 0.97459 0.86559 0.78288 0.85202 0.78095 1.19701 1.21108 1.21105 0.91252 0.91283 0.91672 0.83428 0.78023 0.84953 0.85982 0.91574 0.91597 0.94173 0.91539 0.93771 0.93774 0.91539 0.94167 0.96347 0.96351 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.80 9.99 36.01 0.36 -0.44 16 2 C -0.16 -1.84 6.16 -104.75 -0.65 -2.48 16 3 C -0.21 -2.18 10.87 -39.70 -0.43 -2.61 16 4 C -0.03 -0.33 12.09 29.42 0.36 0.03 16 5 O -0.17 -2.15 10.65 5.71 0.06 -2.09 16 6 C -0.01 -0.08 5.82 -35.63 -0.21 -0.29 16 7 C -0.03 -0.35 5.96 -29.04 -0.17 -0.52 16 8 C 0.45 6.85 7.95 36.00 0.29 7.14 16 9 O -0.50 -9.34 15.78 -18.76 -0.30 -9.63 16 10 O -0.35 -5.61 8.88 -39.26 -0.35 -5.96 16 11 C 0.08 1.48 4.32 37.15 0.16 1.64 16 12 C -0.06 -1.18 0.61 -154.51 -0.09 -1.27 16 13 C -0.13 -2.37 8.08 37.16 0.30 -2.07 16 14 C -0.13 -2.34 8.08 37.16 0.30 -2.04 16 15 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 16 C -0.51 -13.65 7.65 -34.44 -0.26 -13.91 16 17 H 0.06 1.60 5.68 -52.49 -0.30 1.31 16 18 C 0.06 1.55 5.46 -17.81 -0.10 1.45 16 19 N -0.90 -26.52 13.29 55.43 0.74 -25.79 16 20 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.64 7.78 -51.93 -0.40 0.23 16 27 H 0.15 1.16 8.06 -52.48 -0.42 0.74 16 28 H 0.20 1.18 8.06 -52.48 -0.42 0.75 16 29 H 0.13 1.02 7.76 -51.93 -0.40 0.62 16 30 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 32 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 33 H 0.04 0.66 7.68 -51.93 -0.40 0.26 16 34 H 0.07 1.31 6.62 -51.93 -0.34 0.97 16 35 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 1.30 6.62 -51.93 -0.34 0.96 16 38 H 0.04 0.65 7.68 -51.93 -0.40 0.25 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 344.04 15.07 5.18 5.18 Total: -1.00 -32.57 344.04 -6.32 -38.89 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -6.37 Total: -2.20 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -0.26 Total: -14.65 kcal Atomic # 7 Polarization: -26.52 SS G_CDS: 0.74 Total: -25.79 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.58 Total: -17.69 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.57 -6.32 -38.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263478777.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.840 kcal (2) G-P(sol) polarization free energy of solvation -32.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds