Wall clock time and date at job start Tue Mar 31 2020 01:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41378 * 126.58058 * 2 1 4 4 C 1.34515 * 106.83926 * 179.97438 * 3 2 1 5 5 O 1.34298 * 108.42045 * 359.74252 * 4 3 2 6 6 C 1.34308 * 109.47698 * 0.43050 * 5 4 3 7 7 C 1.50693 * 125.78813 * 179.82761 * 6 5 4 8 8 C 1.50697 * 109.47486 * 269.69441 * 7 6 5 9 9 O 1.20833 * 119.99747 * 0.02562 * 8 7 6 10 10 O 1.34230 * 120.00262 * 179.72204 * 8 7 6 11 11 C 1.45202 * 116.99836 * 180.27336 * 10 8 7 12 12 C 1.52994 * 109.46919 * 180.02562 * 11 10 8 13 13 C 1.53002 * 109.47208 * 300.00395 * 12 11 10 14 14 C 1.52997 * 109.47257 * 60.00360 * 12 11 10 15 15 C 1.52999 * 109.47236 * 180.02562 * 12 11 10 16 16 C 1.50701 * 109.47172 * 180.02562 * 15 12 11 17 17 H 1.07995 * 120.00097 * 359.97438 * 16 15 12 18 18 C 1.37882 * 119.99941 * 179.97438 * 16 15 12 19 19 N 1.31523 * 120.00025 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00217 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46989 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47302 * 119.99601 * 20 18 16 23 23 H 1.48499 * 109.47252 * 240.00183 * 20 18 16 24 24 H 1.08990 * 109.47338 * 270.04289 * 1 2 3 25 25 H 1.09002 * 109.47047 * 30.03987 * 1 2 3 26 26 H 1.09000 * 109.47579 * 150.03467 * 1 2 3 27 27 H 1.08007 * 126.57882 * 359.97438 * 3 2 1 28 28 H 1.08004 * 125.78732 * 180.02562 * 4 3 2 29 29 H 1.09004 * 109.47069 * 149.69644 * 7 6 5 30 30 H 1.09000 * 109.47237 * 29.70149 * 7 6 5 31 31 H 1.08998 * 109.47630 * 300.00638 * 11 10 8 32 32 H 1.09004 * 109.46770 * 60.01042 * 11 10 8 33 33 H 1.08996 * 109.47459 * 60.00324 * 13 12 11 34 34 H 1.09001 * 109.46957 * 179.97438 * 13 12 11 35 35 H 1.08996 * 109.47234 * 299.99913 * 13 12 11 36 36 H 1.09006 * 109.47128 * 59.99949 * 14 12 11 37 37 H 1.09001 * 109.47549 * 179.97438 * 14 12 11 38 38 H 1.09005 * 109.47490 * 300.00068 * 14 12 11 39 39 H 1.09006 * 109.46823 * 299.99852 * 15 12 11 40 40 H 1.08996 * 109.47249 * 60.00061 * 15 12 11 41 41 H 0.96994 * 120.00123 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1353 0.0000 4 6 3.6157 0.6809 0.0006 5 8 3.5847 -0.6617 0.0066 6 6 2.3085 -1.0802 0.0005 7 6 1.8521 -2.5164 0.0006 8 6 1.7004 -2.9955 -1.4201 9 8 1.9390 -2.2475 -2.3386 10 8 1.3061 -4.2549 -1.6652 11 6 1.1875 -4.6493 -3.0576 12 6 0.7297 -6.1069 -3.1375 13 6 1.7552 -7.0025 -2.4394 14 6 -0.6284 -6.2536 -2.4485 15 6 0.6053 -6.5227 -4.6047 16 6 0.1538 -7.9584 -4.6834 17 1 -0.0259 -8.5183 -3.7776 18 6 -0.0298 -8.5570 -5.9118 19 7 0.1886 -7.8749 -7.0149 20 14 -0.5887 -10.3367 -6.0095 21 1 -0.7640 -10.8765 -4.6371 22 1 -1.8803 -10.4107 -6.7386 23 1 0.4332 -11.1377 -6.7301 24 1 -0.3633 0.0008 1.0276 25 1 -0.3633 0.8896 -0.5145 26 1 -0.3634 -0.8903 -0.5133 27 1 2.0367 2.1690 -0.0004 28 1 4.5060 1.2922 0.0011 29 1 0.8936 -2.5930 0.5141 30 1 2.5900 -3.1321 0.5149 31 1 0.4567 -4.0115 -3.5549 32 1 2.1550 -4.5445 -3.5486 33 1 1.8442 -6.7065 -1.3941 34 1 1.4288 -8.0410 -2.4959 35 1 2.7227 -6.8981 -2.9302 36 1 -1.3590 -5.6155 -2.9459 37 1 -0.9547 -7.2920 -2.5058 38 1 -0.5394 -5.9575 -1.4032 39 1 -0.1251 -5.8847 -5.1024 40 1 1.5730 -6.4184 -5.0952 41 1 0.0591 -8.2958 -7.8791 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263478777.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:57 Heat of formation + Delta-G solvation = -114.426108 kcal Electronic energy + Delta-G solvation = -21770.050342 eV Core-core repulsion = 18422.439972 eV Total energy + Delta-G solvation = -3347.610371 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.58250 -41.50950 -38.79406 -36.91359 -35.28657 -34.41629 -33.25717 -30.07943 -29.24249 -28.06925 -27.94168 -26.98433 -25.02144 -22.72453 -22.20055 -20.57053 -19.90077 -18.84831 -18.34520 -18.03055 -17.63463 -17.26886 -16.57086 -16.47397 -15.66168 -15.25059 -15.13820 -14.76031 -14.51631 -14.05111 -14.01740 -13.95343 -13.72035 -13.64252 -13.42186 -13.11927 -12.94177 -12.71002 -12.67194 -12.40213 -12.31578 -12.24669 -11.94823 -11.85298 -11.69138 -11.36952 -11.03845 -10.89083 -10.53610 -10.53323 -9.35849 -8.15888 -6.23719 0.61379 1.13669 1.42214 1.43066 1.51108 1.55652 1.82024 2.17158 2.44490 3.18900 3.50515 3.79341 3.92542 3.93591 3.95056 4.03007 4.21437 4.22736 4.39973 4.53010 4.59718 4.62602 4.74744 4.78546 4.85898 4.92569 5.03713 5.09905 5.13024 5.15206 5.28357 5.43158 5.45121 5.46794 5.52264 5.54232 5.64318 5.75060 5.87636 6.17412 6.27903 6.68216 6.90653 7.44133 8.97096 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.041674 B = 0.003026 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.722439 B = 9250.037058 C = 9276.580993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.170 4.170 3 C -0.229 4.229 4 C -0.033 4.033 5 O -0.192 6.192 6 C -0.037 4.037 7 C -0.023 4.023 8 C 0.455 3.545 9 O -0.542 6.542 10 O -0.340 6.340 11 C 0.090 3.910 12 C -0.055 4.055 13 C -0.120 4.120 14 C -0.119 4.119 15 C 0.039 3.961 16 C -0.513 4.513 17 H 0.073 0.927 18 C -0.005 4.005 19 N -0.939 5.939 20 Si 0.960 3.040 21 H -0.256 1.256 22 H -0.283 1.283 23 H -0.284 1.284 24 H 0.091 0.909 25 H 0.072 0.928 26 H 0.057 0.943 27 H 0.168 0.832 28 H 0.238 0.762 29 H 0.166 0.834 30 H 0.148 0.852 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.036 0.964 36 H 0.038 0.962 37 H 0.055 0.945 38 H 0.071 0.929 39 H -0.011 1.011 40 H -0.013 1.013 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.754 14.448 19.522 24.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.172 4.172 3 C -0.248 4.248 4 C -0.100 4.100 5 O -0.088 6.088 6 C -0.086 4.086 7 C -0.060 4.060 8 C 0.300 3.700 9 O -0.432 6.432 10 O -0.256 6.256 11 C 0.016 3.984 12 C -0.056 4.056 13 C -0.177 4.177 14 C -0.176 4.176 15 C 0.002 3.998 16 C -0.551 4.551 17 H 0.091 0.909 18 C -0.202 4.202 19 N -0.580 5.580 20 Si 0.786 3.214 21 H -0.180 1.180 22 H -0.209 1.209 23 H -0.210 1.210 24 H 0.109 0.891 25 H 0.091 0.909 26 H 0.076 0.924 27 H 0.186 0.814 28 H 0.254 0.746 29 H 0.183 0.817 30 H 0.166 0.834 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.007 0.993 40 H 0.006 0.994 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.047 14.419 19.053 24.088 hybrid contribution -0.125 -0.394 -1.314 1.378 sum 2.921 14.025 17.739 22.801 Atomic orbital electron populations 1.20283 0.87927 1.02813 1.03302 1.20657 0.98313 0.92405 1.05779 1.22065 0.92725 1.00625 1.09358 1.24774 1.01212 0.79875 1.04185 1.83972 1.28960 1.24181 1.71735 1.21547 0.81520 0.95710 1.09861 1.19807 1.07679 0.88795 0.89691 1.24249 0.72507 0.79860 0.93419 1.90690 1.47456 1.56760 1.48328 1.86457 1.78060 1.30037 1.31085 1.23115 1.00504 0.96594 0.78172 1.20637 0.97226 0.90419 0.97274 1.21654 0.96934 0.99610 0.99512 1.21650 0.94584 1.01829 0.99579 1.18995 0.94675 0.95930 0.90197 1.21575 1.43754 0.97255 0.92502 0.90860 1.25957 0.96039 1.02508 0.95653 1.70125 1.51153 1.38628 0.98094 0.85457 0.77581 0.79670 0.78718 1.18011 1.20917 1.20972 0.89073 0.90919 0.92385 0.81420 0.74613 0.81696 0.83412 0.92574 0.92887 0.91137 0.92505 0.94502 0.94315 0.92552 0.91052 0.99283 0.99414 0.93084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.46 9.99 71.24 0.71 -0.75 16 2 C -0.17 -3.67 6.16 -19.94 -0.12 -3.80 16 3 C -0.23 -4.34 10.87 22.19 0.24 -4.10 16 4 C -0.03 -0.61 12.09 66.97 0.81 0.20 16 5 O -0.19 -4.63 10.65 -2.48 -0.03 -4.65 16 6 C -0.04 -0.86 5.82 24.83 0.14 -0.71 16 7 C -0.02 -0.44 5.96 29.10 0.17 -0.26 16 8 C 0.46 13.18 7.95 71.23 0.57 13.75 16 9 O -0.54 -20.28 15.78 21.94 0.35 -19.94 16 10 O -0.34 -10.40 8.88 -51.41 -0.46 -10.86 16 11 C 0.09 3.35 4.32 71.98 0.31 3.66 16 12 C -0.06 -2.21 0.61 -52.18 -0.03 -2.24 16 13 C -0.12 -4.35 8.08 71.98 0.58 -3.77 16 14 C -0.12 -4.27 8.08 71.98 0.58 -3.69 16 15 C 0.04 2.02 4.04 29.85 0.12 2.14 16 16 C -0.51 -27.76 7.65 25.60 0.20 -27.57 16 17 H 0.07 3.74 5.68 -2.91 -0.02 3.72 16 18 C 0.00 -0.27 5.46 84.65 0.46 0.20 16 19 N -0.94 -57.14 13.29 21.45 0.28 -56.85 16 20 Si 0.96 43.68 29.54 68.60 2.03 45.71 16 21 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 22 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 24 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.06 1.05 7.78 -2.39 -0.02 1.03 16 27 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 28 H 0.24 2.18 8.06 -2.91 -0.02 2.16 16 29 H 0.17 1.98 7.76 -2.38 -0.02 1.96 16 30 H 0.15 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.06 2.18 8.13 -2.39 -0.02 2.16 16 32 H 0.05 2.09 8.13 -2.38 -0.02 2.07 16 33 H 0.07 2.12 7.68 -2.39 -0.02 2.10 16 34 H 0.06 2.16 6.62 -2.39 -0.02 2.14 16 35 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 37 H 0.06 2.12 6.62 -2.39 -0.02 2.10 16 38 H 0.07 2.10 7.68 -2.38 -0.02 2.09 16 39 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 40 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 41 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -72.15 344.04 7.93 -64.23 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 1.01 Total: 9.31 kcal Atomic # 6 Polarization: -31.68 SS G_CDS: 4.74 Total: -26.94 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: 0.28 Total: -56.85 kcal Atomic # 8 Polarization: -35.31 SS G_CDS: -0.14 Total: -35.45 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -72.15 7.93 -64.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263478777.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.200 kcal (2) G-P(sol) polarization free energy of solvation -72.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds