Wall clock time and date at job start Tue Mar 31 2020 01:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00692 * 2 1 4 4 H 1.48495 * 109.47241 * 240.00306 * 3 2 1 5 5 H 1.48504 * 109.46783 * 0.02562 * 3 2 1 6 6 H 1.48491 * 109.47246 * 119.99865 * 3 2 1 7 7 C 1.37879 * 119.99468 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00412 * 175.06101 * 7 2 1 9 9 C 1.50703 * 120.00225 * 355.06673 * 7 2 1 10 10 C 1.52999 * 113.00308 * 65.24757 * 9 7 2 11 11 O 1.45196 * 109.46731 * 55.37847 * 10 9 7 12 12 C 1.34232 * 116.99831 * 179.97438 * 11 10 9 13 13 O 1.20825 * 120.00012 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.00142 * 179.97438 * 12 11 10 15 15 H 1.09004 * 110.05250 * 26.43222 * 14 12 11 16 16 C 1.54380 * 110.11964 * 147.94398 * 14 12 11 17 17 C 1.54921 * 104.22648 * 142.81356 * 16 14 12 18 18 C 1.54993 * 102.82042 * 322.28127 * 17 16 14 19 19 C 1.53479 * 110.07392 * 264.94288 * 14 12 11 20 20 C 1.52576 * 121.05179 * 96.50479 * 19 14 12 21 21 C 1.52551 * 121.08685 * 24.79244 * 19 14 12 22 22 C 1.54033 * 113.81694 * 197.07669 * 9 7 2 23 23 O 1.44449 * 85.42674 * 91.80698 * 22 9 7 24 24 C 1.44184 * 93.37965 * 24.08885 * 23 22 9 25 25 H 0.97001 * 119.99379 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46759 * 295.38328 * 10 9 7 27 27 H 1.08989 * 109.47253 * 175.38024 * 10 9 7 28 28 H 1.09006 * 110.48494 * 261.50272 * 16 14 12 29 29 H 1.09001 * 110.47871 * 24.12757 * 16 14 12 30 30 H 1.09000 * 110.74419 * 80.61668 * 17 16 14 31 31 H 1.09008 * 110.74433 * 203.76905 * 17 16 14 32 32 H 1.09000 * 110.50854 * 278.92558 * 18 17 16 33 33 H 1.08994 * 110.51110 * 156.21290 * 18 17 16 34 34 H 1.09004 * 117.51021 * 356.97262 * 20 19 14 35 35 H 1.08997 * 117.51336 * 142.06250 * 20 19 14 36 36 H 1.08999 * 117.51215 * 217.88448 * 21 19 14 37 37 H 1.09004 * 117.51348 * 2.96551 * 21 19 14 38 38 H 1.09000 * 113.86382 * 205.91088 * 22 9 7 39 39 H 1.09003 * 113.86642 * 337.61959 * 22 9 7 40 40 H 1.08998 * 113.86347 * 221.77278 * 24 23 22 41 41 H 1.08994 * 113.98260 * 90.07720 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2844 2.7464 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0814 -1.1961 -0.0800 9 6 1.2551 -2.4967 0.1133 10 6 0.3528 -2.7737 -1.0909 11 8 1.1421 -2.7237 -2.3085 12 6 0.4955 -2.9474 -3.4634 13 8 -0.6907 -3.1769 -3.4570 14 6 1.2489 -2.9112 -4.7680 15 1 2.2972 -3.1589 -4.6013 16 6 0.6230 -3.9045 -5.7705 17 6 0.7298 -3.1838 -7.1377 18 6 0.4446 -1.7052 -6.7702 19 6 1.1314 -1.5201 -5.4058 20 6 2.2252 -0.4732 -5.2177 21 6 0.8584 -0.2839 -4.5546 22 6 2.1409 -3.6913 0.5145 23 8 1.7756 -3.3578 1.8717 24 6 0.5578 -2.6975 1.4722 25 1 -0.4849 0.8401 0.0004 26 1 -0.4336 -2.0203 -1.1364 27 1 -0.0960 -3.7617 -0.9890 28 1 1.1869 -4.8372 -5.7859 29 1 -0.4208 -4.0930 -5.5192 30 1 1.7313 -3.2919 -7.5539 31 1 -0.0189 -3.5628 -7.8335 32 1 -0.6283 -1.5332 -6.6843 33 1 0.8816 -1.0364 -7.5116 34 1 3.0656 -0.7330 -4.5739 35 1 2.4643 0.1638 -6.0693 36 1 0.1985 0.4777 -4.9700 37 1 0.7997 -0.4191 -3.4746 38 1 1.7591 -4.6556 0.1794 39 1 3.1989 -3.5495 0.2937 40 1 0.3628 -1.7692 2.0092 41 1 -0.3098 -3.3559 1.4297 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263547336.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:48 Heat of formation + Delta-G solvation = -85.077844 kcal Electronic energy + Delta-G solvation = -23243.834877 eV Core-core repulsion = 19897.497142 eV Total energy + Delta-G solvation = -3346.337734 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.30972 -39.25282 -38.10445 -35.58675 -33.95457 -32.91507 -30.16352 -29.22837 -25.95784 -25.42241 -25.17897 -24.10534 -22.24425 -21.51090 -20.29392 -19.04579 -18.38471 -16.98649 -16.42476 -15.93421 -15.69452 -15.18519 -14.88949 -14.69890 -14.43569 -14.35819 -14.07335 -13.61977 -12.92020 -12.54398 -12.45273 -12.09748 -11.91041 -11.72331 -11.49784 -11.22462 -11.07645 -10.95738 -10.83133 -10.78718 -10.57812 -10.45800 -10.16708 -10.04049 -9.88832 -9.69073 -9.43962 -9.26980 -9.04458 -8.67614 -8.37520 -6.17149 -4.20904 2.86869 3.26821 3.31405 3.34418 3.40172 4.05174 4.32876 4.44118 4.65287 4.85105 4.95597 5.04200 5.17910 5.20590 5.29652 5.45871 5.53958 5.61096 5.79502 5.83827 5.89260 5.94142 5.95362 6.02492 6.08358 6.15708 6.18619 6.22380 6.29928 6.30804 6.36207 6.40305 6.53952 6.62127 6.99700 7.08926 7.24058 7.35994 7.44628 7.78504 8.17734 8.58380 8.75898 9.42902 10.90329 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.017346 B = 0.006693 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.784398 B = 4182.490608 C = 5234.796716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.069 3.931 3 Si 0.895 3.105 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.485 4.485 8 H 0.064 0.936 9 C 0.034 3.966 10 C 0.081 3.919 11 O -0.331 6.331 12 C 0.461 3.539 13 O -0.522 6.522 14 C -0.052 4.052 15 H 0.100 0.900 16 C -0.114 4.114 17 C -0.118 4.118 18 C -0.085 4.085 19 C -0.125 4.125 20 C -0.160 4.160 21 C -0.167 4.167 22 C 0.028 3.972 23 O -0.389 6.389 24 C 0.049 3.951 25 H 0.265 0.735 26 H 0.094 0.906 27 H 0.031 0.969 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.110 0.890 38 H 0.054 0.946 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.848 -3.866 -12.046 12.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.134 4.134 3 Si 0.722 3.278 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.522 4.522 8 H 0.083 0.917 9 C 0.034 3.966 10 C 0.007 3.993 11 O -0.245 6.245 12 C 0.304 3.696 13 O -0.412 6.412 14 C -0.071 4.071 15 H 0.119 0.881 16 C -0.152 4.152 17 C -0.155 4.155 18 C -0.123 4.123 19 C -0.125 4.125 20 C -0.197 4.197 21 C -0.204 4.204 22 C -0.049 4.049 23 O -0.308 6.308 24 C -0.028 4.028 25 H 0.075 0.925 26 H 0.112 0.888 27 H 0.050 0.950 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.118 0.882 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.129 0.871 38 H 0.072 0.928 39 H 0.097 0.903 40 H 0.111 0.889 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.463 -3.840 -11.724 12.423 hybrid contribution 0.129 0.961 0.018 0.970 sum 1.592 -2.878 -11.705 12.159 Atomic orbital electron populations 1.69862 1.05866 1.27251 1.49580 1.24919 0.94892 0.99175 0.94417 0.86588 0.79671 0.82595 0.78903 1.19919 1.21239 1.20089 1.20504 0.93088 0.88259 1.50398 0.91735 1.21079 0.91874 0.94539 0.89123 1.23469 0.95579 0.99125 0.81142 1.86537 1.43084 1.79813 1.15082 1.23371 0.86733 0.72793 0.86686 1.90565 1.16826 1.45794 1.88065 1.21089 1.00766 0.95541 0.89717 0.88148 1.22414 1.02499 0.96828 0.93445 1.22431 1.01590 0.95011 0.96509 1.21861 1.00211 0.96558 0.93637 1.21478 1.04560 0.89247 0.97205 1.23020 0.93039 1.00806 1.02841 1.23106 0.98708 0.98112 1.00455 1.24140 1.00783 0.97233 0.82761 1.89528 1.38126 1.77019 1.26085 1.23892 0.86529 0.95599 0.96778 0.92520 0.88831 0.95045 0.91062 0.89583 0.91284 0.91225 0.91012 0.91458 0.88154 0.88842 0.88879 0.87149 0.92835 0.90338 0.88920 0.93328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.73 11.40 55.43 0.63 -23.10 16 2 C 0.07 1.79 5.22 -17.82 -0.09 1.69 16 3 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.49 -12.67 7.96 -34.44 -0.27 -12.95 16 8 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.03 0.83 0.61 -154.58 -0.09 0.73 16 10 C 0.08 1.89 4.62 37.16 0.17 2.06 16 11 O -0.33 -7.34 9.63 -39.26 -0.38 -7.71 16 12 C 0.46 9.21 5.71 36.01 0.21 9.41 16 13 O -0.52 -11.59 15.51 -18.75 -0.29 -11.88 16 14 C -0.05 -0.80 3.26 -90.80 -0.30 -1.09 16 15 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 16 C -0.11 -1.47 6.33 -24.99 -0.16 -1.62 16 17 C -0.12 -1.24 6.91 -24.66 -0.17 -1.41 16 18 C -0.09 -1.02 6.58 -25.23 -0.17 -1.18 16 19 C -0.12 -1.82 2.26 -154.25 -0.35 -2.17 16 20 C -0.16 -2.25 10.23 -26.90 -0.28 -2.53 16 21 C -0.17 -2.80 9.63 -26.92 -0.26 -3.06 16 22 C 0.03 0.60 8.37 37.64 0.31 0.92 16 23 O -0.39 -9.23 12.41 -35.23 -0.44 -9.67 16 24 C 0.05 1.15 8.02 37.65 0.30 1.45 16 25 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 26 H 0.09 2.45 6.72 -51.93 -0.35 2.10 16 27 H 0.03 0.70 8.08 -51.94 -0.42 0.28 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.09 1.25 6.92 -51.93 -0.36 0.89 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.69 8.11 -51.93 -0.42 0.27 16 34 H 0.10 1.47 8.14 -51.93 -0.42 1.04 16 35 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.11 2.31 7.10 -51.93 -0.37 1.94 16 38 H 0.05 1.04 8.06 -51.93 -0.42 0.62 16 39 H 0.08 1.64 8.09 -51.93 -0.42 1.22 16 40 H 0.09 2.31 7.80 -51.93 -0.40 1.90 16 41 H 0.05 1.04 8.10 -51.93 -0.42 0.62 16 LS Contribution 335.75 15.07 5.06 5.06 Total: -1.00 -28.68 335.75 -8.09 -36.77 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -6.51 Total: 4.67 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -1.14 Total: -9.74 kcal Atomic # 7 Polarization: -23.73 SS G_CDS: 0.63 Total: -23.10 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -1.11 Total: -29.26 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.68 -8.09 -36.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263547336.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.308 kcal (2) G-P(sol) polarization free energy of solvation -28.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds