Wall clock time and date at job start Tue Mar 31 2020 01:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00692 * 2 1 4 4 H 1.48495 * 109.47241 * 240.00306 * 3 2 1 5 5 H 1.48504 * 109.46783 * 0.02562 * 3 2 1 6 6 H 1.48491 * 109.47246 * 119.99865 * 3 2 1 7 7 C 1.37879 * 119.99468 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00412 * 175.06101 * 7 2 1 9 9 C 1.50703 * 120.00225 * 355.06673 * 7 2 1 10 10 C 1.52999 * 113.00308 * 65.24757 * 9 7 2 11 11 O 1.45196 * 109.46731 * 55.37847 * 10 9 7 12 12 C 1.34232 * 116.99831 * 179.97438 * 11 10 9 13 13 O 1.20825 * 120.00012 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.00142 * 179.97438 * 12 11 10 15 15 H 1.09004 * 110.05250 * 26.43222 * 14 12 11 16 16 C 1.54380 * 110.11964 * 147.94398 * 14 12 11 17 17 C 1.54921 * 104.22648 * 142.81356 * 16 14 12 18 18 C 1.54993 * 102.82042 * 322.28127 * 17 16 14 19 19 C 1.53479 * 110.07392 * 264.94288 * 14 12 11 20 20 C 1.52576 * 121.05179 * 96.50479 * 19 14 12 21 21 C 1.52551 * 121.08685 * 24.79244 * 19 14 12 22 22 C 1.54033 * 113.81694 * 197.07669 * 9 7 2 23 23 O 1.44449 * 85.42674 * 91.80698 * 22 9 7 24 24 C 1.44184 * 93.37965 * 24.08885 * 23 22 9 25 25 H 0.97001 * 119.99379 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46759 * 295.38328 * 10 9 7 27 27 H 1.08989 * 109.47253 * 175.38024 * 10 9 7 28 28 H 1.09006 * 110.48494 * 261.50272 * 16 14 12 29 29 H 1.09001 * 110.47871 * 24.12757 * 16 14 12 30 30 H 1.09000 * 110.74419 * 80.61668 * 17 16 14 31 31 H 1.09008 * 110.74433 * 203.76905 * 17 16 14 32 32 H 1.09000 * 110.50854 * 278.92558 * 18 17 16 33 33 H 1.08994 * 110.51110 * 156.21290 * 18 17 16 34 34 H 1.09004 * 117.51021 * 356.97262 * 20 19 14 35 35 H 1.08997 * 117.51336 * 142.06250 * 20 19 14 36 36 H 1.08999 * 117.51215 * 217.88448 * 21 19 14 37 37 H 1.09004 * 117.51348 * 2.96551 * 21 19 14 38 38 H 1.09000 * 113.86382 * 205.91088 * 22 9 7 39 39 H 1.09003 * 113.86642 * 337.61959 * 22 9 7 40 40 H 1.08998 * 113.86347 * 221.77278 * 24 23 22 41 41 H 1.08994 * 113.98260 * 90.07720 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2844 2.7464 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0814 -1.1961 -0.0800 9 6 1.2551 -2.4967 0.1133 10 6 0.3528 -2.7737 -1.0909 11 8 1.1421 -2.7237 -2.3085 12 6 0.4955 -2.9474 -3.4634 13 8 -0.6907 -3.1769 -3.4570 14 6 1.2489 -2.9112 -4.7680 15 1 2.2972 -3.1589 -4.6013 16 6 0.6230 -3.9045 -5.7705 17 6 0.7298 -3.1838 -7.1377 18 6 0.4446 -1.7052 -6.7702 19 6 1.1314 -1.5201 -5.4058 20 6 2.2252 -0.4732 -5.2177 21 6 0.8584 -0.2839 -4.5546 22 6 2.1409 -3.6913 0.5145 23 8 1.7756 -3.3578 1.8717 24 6 0.5578 -2.6975 1.4722 25 1 -0.4849 0.8401 0.0004 26 1 -0.4336 -2.0203 -1.1364 27 1 -0.0960 -3.7617 -0.9890 28 1 1.1869 -4.8372 -5.7859 29 1 -0.4208 -4.0930 -5.5192 30 1 1.7313 -3.2919 -7.5539 31 1 -0.0189 -3.5628 -7.8335 32 1 -0.6283 -1.5332 -6.6843 33 1 0.8816 -1.0364 -7.5116 34 1 3.0656 -0.7330 -4.5739 35 1 2.4643 0.1638 -6.0693 36 1 0.1985 0.4777 -4.9700 37 1 0.7997 -0.4191 -3.4746 38 1 1.7591 -4.6556 0.1794 39 1 3.1989 -3.5495 0.2937 40 1 0.3628 -1.7692 2.0092 41 1 -0.3098 -3.3559 1.4297 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263547336.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:48 Heat of formation + Delta-G solvation = -100.310279 kcal Electronic energy + Delta-G solvation = -23244.495405 eV Core-core repulsion = 19897.497142 eV Total energy + Delta-G solvation = -3346.998262 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.82636 -41.01704 -39.49019 -37.29807 -35.05087 -34.90070 -31.96108 -30.50045 -27.44053 -27.20700 -26.81582 -25.85772 -23.49957 -22.84795 -21.41933 -20.93045 -19.74786 -18.61769 -18.20970 -17.51255 -17.30207 -16.87838 -16.30647 -16.24313 -16.18591 -16.02091 -15.69976 -14.85990 -14.44761 -13.97761 -13.84930 -13.67758 -13.60058 -13.33857 -12.83691 -12.71006 -12.64261 -12.44508 -12.37888 -12.00747 -11.90846 -11.82985 -11.76319 -11.52455 -11.34719 -11.30510 -11.19702 -10.92398 -10.63881 -10.60172 -10.27637 -8.18416 -6.27649 1.28536 1.40419 1.41469 1.48077 1.88808 2.39226 2.80477 2.96411 3.21200 3.33922 3.57831 3.77841 3.83011 3.98933 4.13125 4.25833 4.27515 4.31602 4.41670 4.43910 4.46769 4.57445 4.63303 4.73050 4.73962 4.79087 4.88833 4.99562 5.04490 5.10845 5.14413 5.16238 5.16925 5.22678 5.26647 5.41734 5.46198 5.48495 5.71657 5.76425 6.21231 6.70235 6.92486 7.38452 8.87389 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.017346 B = 0.006693 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.784398 B = 4182.490608 C = 5234.796716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.030 3.970 3 Si 0.946 3.054 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.499 4.499 8 H 0.057 0.943 9 C 0.018 3.982 10 C 0.093 3.907 11 O -0.341 6.341 12 C 0.456 3.544 13 O -0.551 6.551 14 C -0.054 4.054 15 H 0.115 0.885 16 C -0.113 4.113 17 C -0.107 4.107 18 C -0.084 4.084 19 C -0.120 4.120 20 C -0.138 4.138 21 C -0.199 4.199 22 C 0.038 3.962 23 O -0.401 6.401 24 C 0.053 3.947 25 H 0.262 0.738 26 H 0.058 0.942 27 H 0.041 0.959 28 H 0.093 0.907 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.126 0.874 36 H 0.101 0.899 37 H 0.059 0.941 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.278 -4.431 -14.443 15.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.170 4.170 3 Si 0.772 3.228 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.537 4.537 8 H 0.076 0.924 9 C 0.018 3.982 10 C 0.019 3.981 11 O -0.256 6.256 12 C 0.301 3.699 13 O -0.442 6.442 14 C -0.073 4.073 15 H 0.133 0.867 16 C -0.151 4.151 17 C -0.144 4.144 18 C -0.121 4.121 19 C -0.121 4.121 20 C -0.175 4.175 21 C -0.236 4.236 22 C -0.039 4.039 23 O -0.321 6.321 24 C -0.024 4.024 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.059 0.941 28 H 0.112 0.888 29 H 0.081 0.919 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.145 0.855 36 H 0.120 0.880 37 H 0.078 0.922 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.089 0.911 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.906 -4.415 -14.127 15.083 hybrid contribution -0.342 1.118 0.780 1.405 sum 2.564 -3.297 -13.347 13.986 Atomic orbital electron populations 1.69974 1.06873 1.27531 1.50229 1.25528 0.95527 1.01792 0.94200 0.85781 0.78653 0.79417 0.78975 1.19272 1.21139 1.19849 1.20709 0.92916 0.89584 1.50467 0.92448 1.21163 0.92660 0.94954 0.89445 1.23127 0.94723 0.98303 0.81970 1.86542 1.43308 1.80258 1.15533 1.24392 0.86844 0.71325 0.87299 1.90541 1.18233 1.47097 1.88372 1.21392 1.01117 0.97239 0.87544 0.86667 1.22469 1.01163 0.97412 0.94016 1.22450 1.03612 0.93140 0.95196 1.21927 0.99403 0.98457 0.92348 1.21688 1.04569 0.87948 0.97865 1.23107 0.91272 1.00260 1.02855 1.22949 1.01971 1.00759 0.97960 1.24230 1.00959 0.97400 0.81290 1.89501 1.38241 1.77114 1.27227 1.23818 0.87231 0.95252 0.96081 0.92841 0.92328 0.94085 0.88812 0.91850 0.88945 0.89335 0.92132 0.88842 0.88910 0.85549 0.88038 0.92213 0.90123 0.89553 0.91088 0.91301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.28 11.40 21.45 0.24 -50.03 16 2 C 0.03 1.60 5.22 84.65 0.44 2.04 16 3 Si 0.95 42.93 29.54 68.60 2.03 44.96 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.50 -26.58 7.96 25.60 0.20 -26.38 16 8 H 0.06 3.06 7.81 -2.91 -0.02 3.04 16 9 C 0.02 0.89 0.61 -52.23 -0.03 0.86 16 10 C 0.09 4.48 4.62 71.98 0.33 4.81 16 11 O -0.34 -15.50 9.63 -51.43 -0.50 -16.00 16 12 C 0.46 18.51 5.71 71.24 0.41 18.92 16 13 O -0.55 -25.18 15.51 21.97 0.34 -24.84 16 14 C -0.05 -1.59 3.26 -10.91 -0.04 -1.63 16 15 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 16 C -0.11 -2.63 6.33 31.72 0.20 -2.43 16 17 C -0.11 -1.81 6.91 31.93 0.22 -1.58 16 18 C -0.08 -1.75 6.58 31.57 0.21 -1.54 16 19 C -0.12 -3.32 2.26 -52.02 -0.12 -3.44 16 20 C -0.14 -3.61 10.23 30.48 0.31 -3.30 16 21 C -0.20 -6.77 9.63 30.48 0.29 -6.48 16 22 C 0.04 1.59 8.37 72.30 0.60 2.20 16 23 O -0.40 -18.87 12.41 -148.98 -1.85 -20.72 16 24 C 0.05 2.52 8.02 72.30 0.58 3.10 16 25 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 26 H 0.06 3.22 6.72 -2.39 -0.02 3.21 16 27 H 0.04 1.85 8.08 -2.39 -0.02 1.83 16 28 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 29 H 0.06 1.78 6.92 -2.39 -0.02 1.77 16 30 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.09 1.49 8.11 -2.39 -0.02 1.47 16 34 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 37 H 0.06 2.65 7.10 -2.38 -0.02 2.63 16 38 H 0.08 2.98 8.06 -2.39 -0.02 2.96 16 39 H 0.09 3.50 8.09 -2.39 -0.02 3.48 16 40 H 0.07 3.64 7.80 -2.39 -0.02 3.62 16 41 H 0.07 2.95 8.10 -2.39 -0.02 2.93 16 Total: -1.00 -64.15 335.75 4.89 -59.26 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 1.01 Total: 22.21 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: 3.62 Total: -14.84 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: 0.24 Total: -50.03 kcal Atomic # 8 Polarization: -59.55 SS G_CDS: -2.00 Total: -61.55 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -64.15 4.89 -59.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263547336.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.054 kcal (2) G-P(sol) polarization free energy of solvation -64.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds