Wall clock time and date at job start Tue Mar 31 2020 01:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48504 * 109.47397 * 270.00231 * 3 2 1 5 5 H 1.48502 * 109.47281 * 30.00231 * 3 2 1 6 6 H 1.48500 * 109.47214 * 150.00153 * 3 2 1 7 7 C 1.37878 * 120.00517 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00327 * 175.10826 * 7 2 1 9 9 C 1.50702 * 119.99838 * 355.11568 * 7 2 1 10 10 C 1.53000 * 113.00279 * 65.43242 * 9 7 2 11 11 O 1.45199 * 109.47075 * 55.40236 * 10 9 7 12 12 C 1.34223 * 116.99835 * 180.02562 * 11 10 9 13 13 O 1.20825 * 120.00341 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.00032 * 180.02562 * 12 11 10 15 15 H 1.09004 * 110.09868 * 324.14354 * 14 12 11 16 16 C 1.54377 * 110.07303 * 202.62821 * 14 12 11 17 17 C 1.54930 * 104.22568 * 217.20438 * 16 14 12 18 18 C 1.54993 * 102.81637 * 37.72379 * 17 16 14 19 19 C 1.53478 * 110.07130 * 85.65696 * 14 12 11 20 20 C 1.52575 * 121.05109 * 263.45006 * 19 14 12 21 21 C 1.52554 * 121.08789 * 335.16382 * 19 14 12 22 22 C 1.54035 * 113.81593 * 197.26158 * 9 7 2 23 23 O 1.44450 * 85.42541 * 91.80451 * 22 9 7 24 24 C 1.44175 * 93.37998 * 24.08640 * 23 22 9 25 25 H 0.96993 * 120.00221 * 359.97438 * 1 2 3 26 26 H 1.09009 * 109.46819 * 295.40424 * 10 9 7 27 27 H 1.09000 * 109.47029 * 175.40714 * 10 9 7 28 28 H 1.09004 * 110.48448 * 98.52026 * 16 14 12 29 29 H 1.09001 * 110.48135 * 335.88822 * 16 14 12 30 30 H 1.09000 * 110.74267 * 279.39639 * 17 16 14 31 31 H 1.09000 * 110.90333 * 156.12913 * 17 16 14 32 32 H 1.08997 * 110.50989 * 203.78443 * 18 17 16 33 33 H 1.08996 * 110.50893 * 81.07028 * 18 17 16 34 34 H 1.09004 * 117.51218 * 217.93676 * 20 19 14 35 35 H 1.08994 * 117.51390 * 3.03287 * 20 19 14 36 36 H 1.08998 * 117.50850 * 357.03139 * 21 19 14 37 37 H 1.08993 * 117.51060 * 142.07689 * 21 19 14 38 38 H 1.09000 * 113.86327 * 205.91024 * 22 9 7 39 39 H 1.08994 * 113.86364 * 337.61885 * 22 9 7 40 40 H 1.08995 * 113.86618 * 221.76381 * 24 23 22 41 41 H 1.09005 * 113.86516 * 90.06215 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0816 -1.1956 -0.0803 9 6 1.2553 -2.4968 0.1100 10 6 0.3573 -2.7744 -1.0973 11 8 1.1509 -2.7251 -2.3122 12 6 0.5083 -2.9484 -3.4693 13 8 -0.6781 -3.1770 -3.4671 14 6 1.2666 -2.9139 -4.7711 15 1 2.0416 -2.1483 -4.7331 16 6 0.2992 -2.6307 -5.9404 17 6 0.8388 -3.5037 -7.1010 18 6 1.2987 -4.7939 -6.3756 19 6 1.8949 -4.2859 -5.0512 20 6 3.3482 -4.5750 -4.6872 21 6 2.2133 -5.2532 -3.9153 22 6 2.1402 -3.6909 0.5147 23 8 1.7700 -3.3572 1.8705 24 6 0.5534 -2.6974 1.4664 25 1 -0.4850 0.8400 0.0004 26 1 -0.4290 -2.0211 -1.1461 27 1 -0.0918 -3.7624 -0.9965 28 1 0.3276 -1.5754 -6.2120 29 1 -0.7152 -2.9306 -5.6774 30 1 1.6810 -3.0158 -7.5918 31 1 0.0503 -3.7253 -7.8201 32 1 2.0573 -5.3121 -6.9622 33 1 0.4484 -5.4487 -6.1852 34 1 3.9268 -5.1907 -5.3759 35 1 3.9052 -3.7895 -4.1766 36 1 2.0239 -4.9136 -2.8970 37 1 2.0449 -6.3147 -4.0959 38 1 1.7599 -4.6555 0.1785 39 1 3.1988 -3.5488 0.2976 40 1 0.3562 -1.7691 2.0025 41 1 -0.3125 -3.3580 1.4215 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263547337.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:51 Heat of formation + Delta-G solvation = -85.082110 kcal Electronic energy + Delta-G solvation = -23122.561307 eV Core-core repulsion = 19776.223387 eV Total energy + Delta-G solvation = -3346.337919 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.35372 -39.26107 -38.15429 -35.64866 -34.00146 -32.91529 -30.16885 -29.24666 -26.00409 -25.43028 -25.18316 -24.12316 -22.42982 -21.52835 -20.30321 -19.06183 -18.46600 -16.95617 -16.48566 -15.98247 -15.77292 -15.18631 -14.95821 -14.73769 -14.41717 -14.36349 -14.15146 -13.62398 -12.91141 -12.68778 -12.49130 -12.05096 -11.93738 -11.75470 -11.50174 -11.40649 -11.09996 -10.99758 -10.86235 -10.77490 -10.58948 -10.45524 -10.20535 -10.18333 -9.89220 -9.74299 -9.44069 -9.32678 -9.04921 -8.67793 -8.37989 -6.17571 -4.21264 2.86771 3.24621 3.31842 3.35218 3.36974 3.92853 4.32747 4.38749 4.57993 4.84331 4.85046 4.94021 5.12748 5.17751 5.22375 5.43917 5.55676 5.58162 5.72133 5.74935 5.81930 5.86271 5.92200 6.00914 6.06978 6.09329 6.12070 6.18011 6.18733 6.26639 6.29599 6.38982 6.40469 6.61322 6.99337 7.08883 7.23740 7.35712 7.44032 7.78447 8.17336 8.57286 8.75940 9.42738 10.90214 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.017982 B = 0.005920 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.715380 B = 4728.905656 C = 5364.071961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.066 3.934 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.485 4.485 8 H 0.065 0.935 9 C 0.034 3.966 10 C 0.081 3.919 11 O -0.329 6.329 12 C 0.462 3.538 13 O -0.523 6.523 14 C -0.053 4.053 15 H 0.104 0.896 16 C -0.115 4.115 17 C -0.119 4.119 18 C -0.086 4.086 19 C -0.124 4.124 20 C -0.159 4.159 21 C -0.172 4.172 22 C 0.028 3.972 23 O -0.389 6.389 24 C 0.049 3.951 25 H 0.265 0.735 26 H 0.093 0.907 27 H 0.031 0.969 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.053 0.947 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.883 -7.364 -11.642 14.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.522 4.522 8 H 0.084 0.916 9 C 0.034 3.966 10 C 0.007 3.993 11 O -0.244 6.244 12 C 0.305 3.695 13 O -0.413 6.413 14 C -0.072 4.072 15 H 0.122 0.878 16 C -0.153 4.153 17 C -0.156 4.156 18 C -0.123 4.123 19 C -0.124 4.124 20 C -0.195 4.195 21 C -0.209 4.209 22 C -0.048 4.048 23 O -0.307 6.307 24 C -0.028 4.028 25 H 0.074 0.926 26 H 0.111 0.889 27 H 0.050 0.950 28 H 0.090 0.910 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.113 0.887 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.111 0.889 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.499 -7.330 -11.316 13.712 hybrid contribution 0.106 0.958 -0.008 0.964 sum 2.605 -6.372 -11.324 13.252 Atomic orbital electron populations 1.69862 1.05934 1.27195 1.49686 1.24950 0.94924 0.99332 0.94422 0.86483 0.79960 0.82823 0.78173 1.20597 1.21096 1.19642 1.20551 0.93139 0.88266 1.50281 0.91640 1.21083 0.91890 0.94546 0.89113 1.23470 0.95496 0.99103 0.81232 1.86531 1.43021 1.79784 1.15053 1.23333 0.86580 0.72777 0.86776 1.90562 1.16913 1.45771 1.88065 1.21118 0.98235 0.97707 0.90188 0.87809 1.22414 0.99823 1.00270 0.92778 1.22443 1.00515 0.95643 0.97015 1.21870 0.99947 0.97384 0.93101 1.21516 0.98645 0.95032 0.97195 1.23029 0.90156 1.03398 1.02964 1.23082 1.02915 0.97825 0.97079 1.24131 1.00741 0.97168 0.82807 1.89528 1.38122 1.77017 1.26075 1.23897 0.86559 0.95611 0.96724 0.92560 0.88902 0.95024 0.90954 0.89334 0.91269 0.91181 0.91410 0.91053 0.88703 0.88036 0.87873 0.88744 0.92867 0.90342 0.88894 0.93326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.17 11.39 55.43 0.63 -23.54 16 2 C 0.07 1.75 5.21 -17.82 -0.09 1.66 16 3 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.48 -12.79 7.96 -34.44 -0.27 -13.06 16 8 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 9 C 0.03 0.83 0.61 -154.58 -0.09 0.73 16 10 C 0.08 1.90 4.62 37.16 0.17 2.07 16 11 O -0.33 -7.29 9.04 -39.24 -0.35 -7.64 16 12 C 0.46 9.24 6.04 36.00 0.22 9.46 16 13 O -0.52 -11.63 15.30 -18.75 -0.29 -11.91 16 14 C -0.05 -0.82 3.27 -90.80 -0.30 -1.12 16 15 H 0.10 1.55 8.14 -51.93 -0.42 1.12 16 16 C -0.12 -1.54 6.30 -24.99 -0.16 -1.70 16 17 C -0.12 -1.23 6.91 -24.66 -0.17 -1.40 16 18 C -0.09 -0.93 6.58 -25.22 -0.17 -1.10 16 19 C -0.12 -1.62 2.26 -154.25 -0.35 -1.97 16 20 C -0.16 -1.88 10.24 -26.90 -0.28 -2.15 16 21 C -0.17 -2.32 9.63 -26.91 -0.26 -2.58 16 22 C 0.03 0.61 8.37 37.64 0.31 0.93 16 23 O -0.39 -9.21 12.41 -35.23 -0.44 -9.65 16 24 C 0.05 1.16 8.01 37.64 0.30 1.46 16 25 H 0.26 6.93 8.31 -40.82 -0.34 6.60 16 26 H 0.09 2.46 6.74 -51.92 -0.35 2.11 16 27 H 0.03 0.70 8.09 -51.93 -0.42 0.28 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.09 1.34 6.80 -51.93 -0.35 0.99 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.62 8.11 -51.93 -0.42 0.20 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.10 1.65 6.65 -51.93 -0.35 1.30 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.05 1.03 8.06 -51.93 -0.42 0.61 16 39 H 0.08 1.63 8.08 -51.93 -0.42 1.21 16 40 H 0.09 2.32 7.77 -51.93 -0.40 1.92 16 41 H 0.05 1.04 8.10 -51.93 -0.42 0.62 16 LS Contribution 334.67 15.07 5.04 5.04 Total: -1.00 -29.17 334.67 -8.03 -37.20 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -6.48 Total: 3.47 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -1.13 Total: -8.78 kcal Atomic # 7 Polarization: -24.17 SS G_CDS: 0.63 Total: -23.54 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -1.08 Total: -29.21 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.17 -8.03 -37.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263547337.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.881 kcal (2) G-P(sol) polarization free energy of solvation -29.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds