Wall clock time and date at job start Tue Mar 31 2020 01:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48504 * 109.47397 * 270.00231 * 3 2 1 5 5 H 1.48502 * 109.47281 * 30.00231 * 3 2 1 6 6 H 1.48500 * 109.47214 * 150.00153 * 3 2 1 7 7 C 1.37878 * 120.00517 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00327 * 175.10826 * 7 2 1 9 9 C 1.50702 * 119.99838 * 355.11568 * 7 2 1 10 10 C 1.53000 * 113.00279 * 65.43242 * 9 7 2 11 11 O 1.45199 * 109.47075 * 55.40236 * 10 9 7 12 12 C 1.34223 * 116.99835 * 180.02562 * 11 10 9 13 13 O 1.20825 * 120.00341 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.00032 * 180.02562 * 12 11 10 15 15 H 1.09004 * 110.09868 * 324.14354 * 14 12 11 16 16 C 1.54377 * 110.07303 * 202.62821 * 14 12 11 17 17 C 1.54930 * 104.22568 * 217.20438 * 16 14 12 18 18 C 1.54993 * 102.81637 * 37.72379 * 17 16 14 19 19 C 1.53478 * 110.07130 * 85.65696 * 14 12 11 20 20 C 1.52575 * 121.05109 * 263.45006 * 19 14 12 21 21 C 1.52554 * 121.08789 * 335.16382 * 19 14 12 22 22 C 1.54035 * 113.81593 * 197.26158 * 9 7 2 23 23 O 1.44450 * 85.42541 * 91.80451 * 22 9 7 24 24 C 1.44175 * 93.37998 * 24.08640 * 23 22 9 25 25 H 0.96993 * 120.00221 * 359.97438 * 1 2 3 26 26 H 1.09009 * 109.46819 * 295.40424 * 10 9 7 27 27 H 1.09000 * 109.47029 * 175.40714 * 10 9 7 28 28 H 1.09004 * 110.48448 * 98.52026 * 16 14 12 29 29 H 1.09001 * 110.48135 * 335.88822 * 16 14 12 30 30 H 1.09000 * 110.74267 * 279.39639 * 17 16 14 31 31 H 1.09000 * 110.90333 * 156.12913 * 17 16 14 32 32 H 1.08997 * 110.50989 * 203.78443 * 18 17 16 33 33 H 1.08996 * 110.50893 * 81.07028 * 18 17 16 34 34 H 1.09004 * 117.51218 * 217.93676 * 20 19 14 35 35 H 1.08994 * 117.51390 * 3.03287 * 20 19 14 36 36 H 1.08998 * 117.50850 * 357.03139 * 21 19 14 37 37 H 1.08993 * 117.51060 * 142.07689 * 21 19 14 38 38 H 1.09000 * 113.86327 * 205.91024 * 22 9 7 39 39 H 1.08994 * 113.86364 * 337.61885 * 22 9 7 40 40 H 1.08995 * 113.86618 * 221.76381 * 24 23 22 41 41 H 1.09005 * 113.86516 * 90.06215 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0816 -1.1956 -0.0803 9 6 1.2553 -2.4968 0.1100 10 6 0.3573 -2.7744 -1.0973 11 8 1.1509 -2.7251 -2.3122 12 6 0.5083 -2.9484 -3.4693 13 8 -0.6781 -3.1770 -3.4671 14 6 1.2666 -2.9139 -4.7711 15 1 2.0416 -2.1483 -4.7331 16 6 0.2992 -2.6307 -5.9404 17 6 0.8388 -3.5037 -7.1010 18 6 1.2987 -4.7939 -6.3756 19 6 1.8949 -4.2859 -5.0512 20 6 3.3482 -4.5750 -4.6872 21 6 2.2133 -5.2532 -3.9153 22 6 2.1402 -3.6909 0.5147 23 8 1.7700 -3.3572 1.8705 24 6 0.5534 -2.6974 1.4664 25 1 -0.4850 0.8400 0.0004 26 1 -0.4290 -2.0211 -1.1461 27 1 -0.0918 -3.7624 -0.9965 28 1 0.3276 -1.5754 -6.2120 29 1 -0.7152 -2.9306 -5.6774 30 1 1.6810 -3.0158 -7.5918 31 1 0.0503 -3.7253 -7.8201 32 1 2.0573 -5.3121 -6.9622 33 1 0.4484 -5.4487 -6.1852 34 1 3.9268 -5.1907 -5.3759 35 1 3.9052 -3.7895 -4.1766 36 1 2.0239 -4.9136 -2.8970 37 1 2.0449 -6.3147 -4.0959 38 1 1.7599 -4.6555 0.1785 39 1 3.1988 -3.5488 0.2976 40 1 0.3562 -1.7691 2.0025 41 1 -0.3125 -3.3580 1.4215 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263547337.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:50 Heat of formation + Delta-G solvation = -100.539754 kcal Electronic energy + Delta-G solvation = -23123.231600 eV Core-core repulsion = 19776.223387 eV Total energy + Delta-G solvation = -3347.008213 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.84057 -41.01802 -39.47012 -37.34265 -35.02983 -34.89504 -31.96801 -30.49677 -27.45462 -27.21740 -26.81079 -25.86603 -23.44778 -22.85637 -21.38775 -20.95007 -19.76524 -18.58449 -18.25823 -17.46526 -17.39235 -16.87873 -16.37797 -16.28619 -16.04846 -16.02316 -15.70680 -14.78804 -14.49042 -13.99807 -13.83509 -13.67222 -13.60717 -13.34113 -12.86905 -12.68890 -12.62564 -12.39923 -12.37651 -12.01221 -11.90863 -11.82890 -11.74432 -11.54280 -11.37080 -11.29517 -11.17011 -10.92845 -10.64972 -10.56709 -10.28412 -8.19768 -6.29373 1.28591 1.39228 1.41694 1.51366 1.87769 2.38935 2.84007 2.95522 3.20171 3.36701 3.56064 3.76282 3.84616 4.02255 4.13368 4.25425 4.27755 4.32178 4.41038 4.44222 4.45527 4.56306 4.63005 4.76065 4.77311 4.79323 4.90885 5.00879 5.06245 5.11223 5.14479 5.15945 5.16759 5.25154 5.29218 5.41166 5.45069 5.47782 5.71065 5.75289 6.20216 6.69594 6.91090 7.37006 8.86591 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.017982 B = 0.005920 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.715380 B = 4728.905656 C = 5364.071961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.024 3.976 3 Si 0.953 3.047 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.499 4.499 8 H 0.059 0.941 9 C 0.019 3.981 10 C 0.094 3.906 11 O -0.339 6.339 12 C 0.457 3.543 13 O -0.551 6.551 14 C -0.054 4.054 15 H 0.107 0.893 16 C -0.118 4.118 17 C -0.108 4.108 18 C -0.082 4.082 19 C -0.131 4.131 20 C -0.139 4.139 21 C -0.189 4.189 22 C 0.039 3.961 23 O -0.401 6.401 24 C 0.053 3.947 25 H 0.263 0.737 26 H 0.058 0.942 27 H 0.040 0.960 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.126 0.874 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.112 0.888 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.378 -8.181 -13.619 16.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.176 4.176 3 Si 0.778 3.222 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.537 4.537 8 H 0.077 0.923 9 C 0.018 3.982 10 C 0.019 3.981 11 O -0.254 6.254 12 C 0.302 3.698 13 O -0.443 6.443 14 C -0.074 4.074 15 H 0.125 0.875 16 C -0.155 4.155 17 C -0.146 4.146 18 C -0.119 4.119 19 C -0.132 4.132 20 C -0.175 4.175 21 C -0.226 4.226 22 C -0.037 4.037 23 O -0.321 6.321 24 C -0.024 4.024 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.058 0.942 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.114 0.886 33 H 0.083 0.917 34 H 0.144 0.856 35 H 0.111 0.889 36 H 0.090 0.910 37 H 0.130 0.870 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.090 0.910 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.006 -8.155 -13.298 16.106 hybrid contribution -0.382 1.195 0.618 1.399 sum 3.624 -6.959 -12.680 14.912 Atomic orbital electron populations 1.69977 1.06984 1.27634 1.50384 1.25614 0.95621 1.02126 0.94244 0.85626 0.78909 0.79405 0.78211 1.20177 1.20874 1.19233 1.20778 0.93011 0.89615 1.50293 0.92310 1.21163 0.92668 0.94942 0.89433 1.23121 0.94625 0.98244 0.82076 1.86543 1.43172 1.80212 1.15440 1.24365 0.86668 0.71375 0.87394 1.90540 1.18292 1.47084 1.88399 1.21363 0.98405 0.99681 0.87911 0.87489 1.22461 0.98175 1.01565 0.93335 1.22451 1.01565 0.94618 0.95924 1.21905 1.00375 0.97614 0.91978 1.21658 0.99817 0.93527 0.98149 1.23108 0.89399 1.02739 1.02266 1.23078 1.04885 0.98890 0.95720 1.24202 1.00876 0.97302 0.81311 1.89500 1.38227 1.77110 1.27220 1.23823 0.87263 0.95271 0.96033 0.92739 0.92364 0.94177 0.90211 0.91667 0.89376 0.89480 0.88624 0.91693 0.85578 0.88931 0.90961 0.87011 0.90260 0.89603 0.91039 0.91320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.69 11.39 21.45 0.24 -50.45 16 2 C 0.02 1.28 5.21 84.66 0.44 1.72 16 3 Si 0.95 42.92 29.54 68.60 2.03 44.95 16 4 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.50 -26.65 7.96 25.60 0.20 -26.44 16 8 H 0.06 3.14 7.81 -2.91 -0.02 3.11 16 9 C 0.02 0.90 0.61 -52.23 -0.03 0.87 16 10 C 0.09 4.50 4.62 71.98 0.33 4.84 16 11 O -0.34 -15.32 9.04 -51.35 -0.46 -15.78 16 12 C 0.46 18.62 6.04 71.24 0.43 19.05 16 13 O -0.55 -25.29 15.30 21.97 0.34 -24.95 16 14 C -0.05 -1.64 3.27 -10.91 -0.04 -1.67 16 15 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 16 C -0.12 -3.02 6.30 31.72 0.20 -2.82 16 17 C -0.11 -1.90 6.91 31.94 0.22 -1.68 16 18 C -0.08 -1.51 6.58 31.57 0.21 -1.30 16 19 C -0.13 -3.18 2.26 -52.02 -0.12 -3.30 16 20 C -0.14 -2.90 10.24 30.48 0.31 -2.58 16 21 C -0.19 -4.83 9.63 30.48 0.29 -4.54 16 22 C 0.04 1.67 8.37 72.30 0.60 2.28 16 23 O -0.40 -18.84 12.41 -148.98 -1.85 -20.69 16 24 C 0.05 2.52 8.01 72.30 0.58 3.10 16 25 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 26 H 0.06 3.20 6.74 -2.38 -0.02 3.19 16 27 H 0.04 1.81 8.09 -2.39 -0.02 1.79 16 28 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 29 H 0.06 1.98 6.80 -2.39 -0.02 1.97 16 30 H 0.09 1.25 8.14 -2.39 -0.02 1.24 16 31 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.10 1.28 8.11 -2.39 -0.02 1.26 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.13 1.87 8.14 -2.38 -0.02 1.85 16 35 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.07 2.31 6.65 -2.39 -0.02 2.29 16 37 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.08 2.94 8.06 -2.39 -0.02 2.92 16 39 H 0.09 3.48 8.08 -2.39 -0.02 3.46 16 40 H 0.07 3.67 7.77 -2.39 -0.02 3.65 16 41 H 0.07 2.94 8.10 -2.38 -0.02 2.92 16 Total: -1.00 -63.82 334.67 4.94 -58.88 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 1.01 Total: 20.52 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: 3.64 Total: -12.48 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: 0.24 Total: -50.45 kcal Atomic # 8 Polarization: -59.45 SS G_CDS: -1.98 Total: -61.42 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -63.82 4.94 -58.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263547337.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.663 kcal (2) G-P(sol) polarization free energy of solvation -63.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds