Wall clock time and date at job start Tue Mar 31 2020 01:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00283 * 2 1 4 4 H 1.48493 * 109.47459 * 239.99842 * 3 2 1 5 5 H 1.48499 * 109.47064 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47065 * 119.99730 * 3 2 1 7 7 C 1.37877 * 119.99737 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00025 * 186.61959 * 7 2 1 9 9 C 1.50700 * 119.99927 * 6.61636 * 7 2 1 10 10 C 1.53002 * 112.99728 * 65.40179 * 9 7 2 11 11 O 1.45195 * 109.47453 * 53.51571 * 10 9 7 12 12 C 1.34230 * 117.00068 * 180.02562 * 11 10 9 13 13 O 1.20822 * 120.00054 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.00219 * 180.02562 * 12 11 10 15 15 C 1.55934 * 115.91809 * 297.93726 * 14 12 11 16 16 C 1.54579 * 104.64362 * 199.96898 * 15 14 12 17 17 C 1.55929 * 104.64269 * 359.97438 * 16 15 14 18 18 C 1.55930 * 105.23108 * 289.52979 * 17 16 15 19 19 C 1.55929 * 115.92230 * 62.05591 * 14 12 11 20 20 C 1.56949 * 100.65102 * 33.78291 * 17 16 15 21 21 C 1.54035 * 113.92597 * 197.32840 * 9 7 2 22 22 O 1.44173 * 85.51978 * 91.66080 * 21 9 7 23 23 C 1.44185 * 93.33713 * 24.19366 * 22 21 9 24 24 H 0.97009 * 119.99879 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47143 * 173.51878 * 10 9 7 26 26 H 1.09000 * 109.47029 * 293.51437 * 10 9 7 27 27 H 1.09000 * 110.39845 * 318.75859 * 15 14 12 28 28 H 1.09001 * 110.40291 * 81.17329 * 15 14 12 29 29 H 1.08997 * 110.40088 * 241.20925 * 16 15 14 30 30 H 1.08993 * 110.50638 * 118.83530 * 16 15 14 31 31 H 1.08999 * 115.92320 * 160.03313 * 17 16 15 32 32 H 1.08998 * 110.40105 * 189.25843 * 18 17 16 33 33 H 1.08992 * 110.40516 * 311.56354 * 18 17 16 34 34 H 1.08998 * 110.40543 * 278.82414 * 19 14 12 35 35 H 1.08992 * 110.40249 * 41.24485 * 19 14 12 36 36 H 1.09002 * 112.02394 * 189.69812 * 20 17 16 37 37 H 1.08995 * 112.09665 * 63.19050 * 20 17 16 38 38 H 1.08997 * 113.86780 * 205.81019 * 21 9 7 39 39 H 1.09002 * 113.86260 * 337.51295 * 21 9 7 40 40 H 1.09001 * 113.86322 * 221.65883 * 23 22 21 41 41 H 1.08997 * 113.86337 * 89.95108 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0791 -1.1972 0.1084 9 6 1.2584 -2.4949 -0.1493 10 6 0.5843 -2.6435 -1.5147 11 8 1.5659 -2.4367 -2.5643 12 6 1.1330 -2.5329 -3.8312 13 8 -0.0278 -2.7821 -4.0557 14 6 2.0949 -2.3312 -4.9736 15 6 2.7584 -0.9231 -5.0655 16 6 3.2473 -0.8161 -6.5280 17 6 2.8337 -2.1699 -7.1819 18 6 3.7722 -3.2378 -6.5414 19 6 3.2753 -3.3465 -5.0581 20 6 1.4949 -2.4642 -6.4175 21 6 2.0674 -3.7324 0.2830 22 8 1.4698 -3.5301 1.5793 23 6 0.3352 -2.8229 1.0393 24 1 -0.4850 0.8401 -0.0004 25 1 0.1618 -3.6443 -1.6043 26 1 -0.2107 -1.9038 -1.6099 27 1 2.0270 -0.1438 -4.8513 28 1 3.6008 -0.8543 -4.3772 29 1 4.3300 -0.6948 -6.5588 30 1 2.7579 0.0159 -7.0343 31 1 2.7781 -2.1759 -8.2705 32 1 3.6682 -4.1928 -7.0563 33 1 4.8083 -2.9009 -6.5729 34 1 4.0716 -3.0615 -4.3706 35 1 2.9254 -4.3551 -4.8386 36 1 1.1241 -3.4700 -6.6150 37 1 0.7351 -1.7083 -6.6153 38 1 1.7568 -4.6553 -0.2066 39 1 3.1468 -3.5813 0.2665 40 1 0.0407 -1.9506 1.6228 41 1 -0.5043 -3.4682 0.7806 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263547476.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:04 Heat of formation + Delta-G solvation = -101.729117 kcal Electronic energy + Delta-G solvation = -23161.485371 eV Core-core repulsion = 19814.425584 eV Total energy + Delta-G solvation = -3347.059788 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.60725 -39.39980 -38.59140 -35.58161 -32.90410 -30.42656 -30.34044 -29.49351 -27.66663 -25.45878 -25.28195 -24.32111 -22.23135 -22.02862 -19.53232 -19.08881 -18.67304 -16.84240 -16.62319 -15.90151 -15.72582 -15.10107 -14.97551 -14.70246 -14.60783 -14.34703 -14.17379 -13.23779 -12.63767 -12.58272 -12.40010 -12.05961 -11.90168 -11.72530 -11.54715 -11.26961 -11.05237 -11.03150 -10.96688 -10.86380 -10.80048 -10.46109 -10.41094 -9.99172 -9.98098 -9.91200 -9.47049 -9.40112 -9.05511 -8.76030 -8.29954 -6.17591 -4.19992 2.78311 3.26920 3.31472 3.34036 3.40263 4.33127 4.33554 4.45551 4.49536 4.89339 5.06382 5.15393 5.17795 5.23300 5.36168 5.38202 5.41748 5.45453 5.65978 5.77537 5.88140 5.94921 5.98407 6.02730 6.05798 6.06766 6.18111 6.19440 6.25063 6.31025 6.31888 6.32780 6.40756 6.56876 6.98035 7.13855 7.28080 7.35333 7.39984 7.78389 8.18229 8.53037 8.76466 9.43379 10.90961 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.017685 B = 0.006137 C = 0.005237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.872940 B = 4561.282820 C = 5345.086684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.067 3.933 3 Si 0.896 3.104 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.485 4.485 8 H 0.065 0.935 9 C 0.034 3.966 10 C 0.082 3.918 11 O -0.324 6.324 12 C 0.481 3.519 13 O -0.522 6.522 14 C -0.078 4.078 15 C -0.105 4.105 16 C -0.118 4.118 17 C -0.106 4.106 18 C -0.117 4.117 19 C -0.104 4.104 20 C -0.098 4.098 21 C 0.028 3.972 22 O -0.389 6.389 23 C 0.050 3.950 24 H 0.265 0.735 25 H 0.036 0.964 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.053 0.947 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.667 -3.864 -12.677 14.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.135 4.135 3 Si 0.724 3.276 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.522 4.522 8 H 0.083 0.917 9 C 0.033 3.967 10 C 0.008 3.992 11 O -0.238 6.238 12 C 0.324 3.676 13 O -0.413 6.413 14 C -0.079 4.079 15 C -0.143 4.143 16 C -0.156 4.156 17 C -0.124 4.124 18 C -0.155 4.155 19 C -0.142 4.142 20 C -0.135 4.135 21 C -0.049 4.049 22 O -0.308 6.308 23 C -0.027 4.027 24 H 0.075 0.925 25 H 0.054 0.946 26 H 0.102 0.898 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.118 0.882 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.118 0.882 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.251 -3.868 -12.398 14.009 hybrid contribution 0.036 0.938 -0.075 0.942 sum 5.287 -2.931 -12.473 13.860 Atomic orbital electron populations 1.69881 1.05938 1.27305 1.49560 1.24939 0.94908 0.99269 0.94401 0.86571 0.79643 0.82546 0.78862 1.19956 1.21258 1.20065 1.20496 0.93361 0.88311 1.50034 0.91669 1.21098 0.92606 0.94586 0.88422 1.23441 0.91072 0.98703 0.85956 1.86544 1.43208 1.79925 1.14166 1.22628 0.87277 0.73128 0.84533 1.90593 1.19402 1.45311 1.85954 1.22447 0.94818 0.98828 0.91789 1.22530 1.00578 0.94228 0.96932 1.22619 1.00790 0.96985 0.95169 1.23564 0.95130 0.95235 0.98507 1.22986 0.98881 0.98734 0.94887 1.22911 0.96225 0.98075 0.96971 1.23406 0.96585 1.02180 0.91371 1.24088 0.99222 0.97376 0.84190 1.89491 1.37295 1.77741 1.26242 1.23925 0.88505 0.94288 0.95982 0.92519 0.94605 0.89790 0.91265 0.90220 0.91383 0.91624 0.88166 0.91606 0.91348 0.90323 0.91454 0.90741 0.90681 0.92912 0.90397 0.88203 0.93528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.18 11.31 55.43 0.63 -23.56 16 2 C 0.07 1.79 5.25 -17.82 -0.09 1.69 16 3 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.48 -12.80 7.92 -34.44 -0.27 -13.08 16 8 H 0.07 1.73 7.82 -52.48 -0.41 1.31 16 9 C 0.03 0.81 0.62 -154.58 -0.10 0.72 16 10 C 0.08 1.93 4.67 37.16 0.17 2.10 16 11 O -0.32 -7.23 9.82 -39.26 -0.39 -7.61 16 12 C 0.48 9.71 7.33 36.01 0.26 9.98 16 13 O -0.52 -11.72 16.26 -18.75 -0.30 -12.02 16 14 C -0.08 -1.20 1.38 -150.41 -0.21 -1.40 16 15 C -0.11 -1.50 5.88 -24.33 -0.14 -1.64 16 16 C -0.12 -1.28 6.23 -24.34 -0.15 -1.43 16 17 C -0.11 -1.08 5.14 -85.35 -0.44 -1.51 16 18 C -0.12 -1.16 6.33 -23.11 -0.15 -1.31 16 19 C -0.10 -1.33 5.99 -23.11 -0.14 -1.47 16 20 C -0.10 -1.28 5.63 -22.47 -0.13 -1.40 16 21 C 0.03 0.61 8.35 37.61 0.31 0.93 16 22 O -0.39 -9.32 12.40 -35.23 -0.44 -9.75 16 23 C 0.05 1.19 7.91 37.61 0.30 1.49 16 24 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 25 H 0.04 0.79 8.04 -51.93 -0.42 0.37 16 26 H 0.08 2.20 7.21 -51.93 -0.37 1.82 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.08 1.16 7.87 -51.93 -0.41 0.75 16 29 H 0.07 0.66 7.87 -51.93 -0.41 0.25 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.61 7.87 -51.93 -0.41 0.20 16 34 H 0.08 1.00 7.87 -51.93 -0.41 0.59 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.05 1.03 8.03 -51.93 -0.42 0.61 16 39 H 0.08 1.63 8.09 -51.93 -0.42 1.21 16 40 H 0.10 2.55 7.36 -51.93 -0.38 2.17 16 41 H 0.05 1.01 8.10 -51.93 -0.42 0.59 16 LS Contribution 330.73 15.07 4.98 4.98 Total: -1.00 -29.19 330.73 -7.88 -37.07 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -6.57 Total: 1.47 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -0.77 Total: -6.35 kcal Atomic # 7 Polarization: -24.18 SS G_CDS: 0.63 Total: -23.56 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -1.13 Total: -29.39 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.19 -7.88 -37.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263547476.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.660 kcal (2) G-P(sol) polarization free energy of solvation -29.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds