Wall clock time and date at job start Tue Mar 31 2020 01:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00283 * 2 1 4 4 H 1.48493 * 109.47459 * 239.99842 * 3 2 1 5 5 H 1.48499 * 109.47064 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47065 * 119.99730 * 3 2 1 7 7 C 1.37877 * 119.99737 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00025 * 186.61959 * 7 2 1 9 9 C 1.50700 * 119.99927 * 6.61636 * 7 2 1 10 10 C 1.53002 * 112.99728 * 65.40179 * 9 7 2 11 11 O 1.45195 * 109.47453 * 53.51571 * 10 9 7 12 12 C 1.34230 * 117.00068 * 180.02562 * 11 10 9 13 13 O 1.20822 * 120.00054 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.00219 * 180.02562 * 12 11 10 15 15 C 1.55934 * 115.91809 * 297.93726 * 14 12 11 16 16 C 1.54579 * 104.64362 * 199.96898 * 15 14 12 17 17 C 1.55929 * 104.64269 * 359.97438 * 16 15 14 18 18 C 1.55930 * 105.23108 * 289.52979 * 17 16 15 19 19 C 1.55929 * 115.92230 * 62.05591 * 14 12 11 20 20 C 1.56949 * 100.65102 * 33.78291 * 17 16 15 21 21 C 1.54035 * 113.92597 * 197.32840 * 9 7 2 22 22 O 1.44173 * 85.51978 * 91.66080 * 21 9 7 23 23 C 1.44185 * 93.33713 * 24.19366 * 22 21 9 24 24 H 0.97009 * 119.99879 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47143 * 173.51878 * 10 9 7 26 26 H 1.09000 * 109.47029 * 293.51437 * 10 9 7 27 27 H 1.09000 * 110.39845 * 318.75859 * 15 14 12 28 28 H 1.09001 * 110.40291 * 81.17329 * 15 14 12 29 29 H 1.08997 * 110.40088 * 241.20925 * 16 15 14 30 30 H 1.08993 * 110.50638 * 118.83530 * 16 15 14 31 31 H 1.08999 * 115.92320 * 160.03313 * 17 16 15 32 32 H 1.08998 * 110.40105 * 189.25843 * 18 17 16 33 33 H 1.08992 * 110.40516 * 311.56354 * 18 17 16 34 34 H 1.08998 * 110.40543 * 278.82414 * 19 14 12 35 35 H 1.08992 * 110.40249 * 41.24485 * 19 14 12 36 36 H 1.09002 * 112.02394 * 189.69812 * 20 17 16 37 37 H 1.08995 * 112.09665 * 63.19050 * 20 17 16 38 38 H 1.08997 * 113.86780 * 205.81019 * 21 9 7 39 39 H 1.09002 * 113.86260 * 337.51295 * 21 9 7 40 40 H 1.09001 * 113.86322 * 221.65883 * 23 22 21 41 41 H 1.08997 * 113.86337 * 89.95108 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0791 -1.1972 0.1084 9 6 1.2584 -2.4949 -0.1493 10 6 0.5843 -2.6435 -1.5147 11 8 1.5659 -2.4367 -2.5643 12 6 1.1330 -2.5329 -3.8312 13 8 -0.0278 -2.7821 -4.0557 14 6 2.0949 -2.3312 -4.9736 15 6 2.7584 -0.9231 -5.0655 16 6 3.2473 -0.8161 -6.5280 17 6 2.8337 -2.1699 -7.1819 18 6 3.7722 -3.2378 -6.5414 19 6 3.2753 -3.3465 -5.0581 20 6 1.4949 -2.4642 -6.4175 21 6 2.0674 -3.7324 0.2830 22 8 1.4698 -3.5301 1.5793 23 6 0.3352 -2.8229 1.0393 24 1 -0.4850 0.8401 -0.0004 25 1 0.1618 -3.6443 -1.6043 26 1 -0.2107 -1.9038 -1.6099 27 1 2.0270 -0.1438 -4.8513 28 1 3.6008 -0.8543 -4.3772 29 1 4.3300 -0.6948 -6.5588 30 1 2.7579 0.0159 -7.0343 31 1 2.7781 -2.1759 -8.2705 32 1 3.6682 -4.1928 -7.0563 33 1 4.8083 -2.9009 -6.5729 34 1 4.0716 -3.0615 -4.3706 35 1 2.9254 -4.3551 -4.8386 36 1 1.1241 -3.4700 -6.6150 37 1 0.7351 -1.7083 -6.6153 38 1 1.7568 -4.6553 -0.2066 39 1 3.1468 -3.5813 0.2665 40 1 0.0407 -1.9506 1.6228 41 1 -0.5043 -3.4682 0.7806 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263547476.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:03 Heat of formation + Delta-G solvation = -117.606250 kcal Electronic energy + Delta-G solvation = -23162.173855 eV Core-core repulsion = 19814.425584 eV Total energy + Delta-G solvation = -3347.748272 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.93757 -41.12721 -40.09433 -37.33117 -34.90723 -32.03970 -31.36117 -30.80435 -28.66339 -27.38206 -27.14883 -26.14955 -23.53516 -23.15746 -20.98532 -20.49216 -20.05770 -18.46736 -18.12442 -17.64538 -17.40130 -16.83297 -16.36019 -16.24560 -16.06307 -15.92478 -15.88760 -14.71198 -14.34808 -13.90942 -13.71215 -13.54373 -13.45947 -13.17399 -12.86412 -12.69791 -12.67718 -12.38289 -12.22683 -12.08619 -12.04577 -11.85345 -11.81488 -11.71129 -11.32884 -11.29865 -11.12440 -10.94417 -10.91485 -10.72350 -10.22885 -8.20817 -6.28727 1.18889 1.40338 1.41037 1.48149 1.85826 2.38845 2.98136 3.20034 3.27087 3.46687 3.49650 3.80997 4.11957 4.18201 4.20977 4.23257 4.32258 4.42102 4.43116 4.45113 4.51850 4.53351 4.54857 4.60624 4.73440 4.79284 4.97899 5.07223 5.09911 5.12248 5.17652 5.20213 5.22120 5.31154 5.37573 5.43945 5.45048 5.48075 5.67735 5.70238 6.20399 6.69326 6.85618 7.36950 8.86332 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.017685 B = 0.006137 C = 0.005237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.872940 B = 4561.282820 C = 5345.086684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.025 3.975 3 Si 0.949 3.051 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.499 4.499 8 H 0.059 0.941 9 C 0.017 3.983 10 C 0.093 3.907 11 O -0.335 6.335 12 C 0.474 3.526 13 O -0.552 6.552 14 C -0.093 4.093 15 C -0.108 4.108 16 C -0.112 4.112 17 C -0.088 4.088 18 C -0.109 4.109 19 C -0.103 4.103 20 C -0.100 4.100 21 C 0.038 3.962 22 O -0.402 6.402 23 C 0.054 3.946 24 H 0.263 0.737 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.043 0.957 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.133 0.867 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.650 -4.322 -14.809 17.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.175 4.175 3 Si 0.774 3.226 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.537 4.537 8 H 0.077 0.923 9 C 0.017 3.983 10 C 0.019 3.981 11 O -0.249 6.249 12 C 0.319 3.681 13 O -0.444 6.444 14 C -0.094 4.094 15 C -0.146 4.146 16 C -0.149 4.149 17 C -0.106 4.106 18 C -0.146 4.146 19 C -0.141 4.141 20 C -0.138 4.138 21 C -0.038 4.038 22 O -0.322 6.322 23 C -0.023 4.023 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.150 0.850 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.251 -4.333 -14.535 16.811 hybrid contribution -0.625 1.056 0.615 1.372 sum 6.626 -3.278 -13.920 15.761 Atomic orbital electron populations 1.69988 1.06996 1.27692 1.50299 1.25601 0.95608 1.02074 0.94237 0.85739 0.78624 0.79148 0.79065 1.19311 1.21128 1.19559 1.20733 0.93278 0.89661 1.49990 0.92259 1.21179 0.93348 0.95058 0.88743 1.23126 0.90417 0.98107 0.86430 1.86552 1.42971 1.80334 1.15074 1.23718 0.87959 0.71748 0.84658 1.90561 1.20979 1.46712 1.86136 1.22675 0.95334 1.00578 0.90827 1.22578 0.99564 0.92677 0.99766 1.22627 1.02052 0.97948 0.92259 1.23628 0.92554 0.94516 0.99860 1.22996 0.99611 0.99713 0.92257 1.22967 0.94782 0.96808 0.99558 1.23480 0.98150 1.01952 0.90183 1.24182 0.99435 0.97324 0.82860 1.89463 1.37495 1.77744 1.27452 1.23830 0.89154 0.93980 0.95327 0.92765 0.93418 0.93230 0.93774 0.90909 0.89281 0.90749 0.84954 0.89808 0.89415 0.90640 0.91821 0.90662 0.91862 0.90113 0.89566 0.90615 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.95 11.31 21.45 0.24 -50.71 16 2 C 0.02 1.34 5.25 84.65 0.44 1.78 16 3 Si 0.95 43.01 29.54 68.60 2.03 45.03 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 7 C -0.50 -26.74 7.92 25.60 0.20 -26.54 16 8 H 0.06 3.16 7.82 -2.91 -0.02 3.14 16 9 C 0.02 0.85 0.62 -52.23 -0.03 0.81 16 10 C 0.09 4.49 4.67 71.98 0.34 4.83 16 11 O -0.33 -15.25 9.82 -51.42 -0.51 -15.76 16 12 C 0.47 19.57 7.33 71.24 0.52 20.09 16 13 O -0.55 -25.54 16.26 21.98 0.36 -25.19 16 14 C -0.09 -2.82 1.38 -49.52 -0.07 -2.89 16 15 C -0.11 -3.02 5.88 32.15 0.19 -2.83 16 16 C -0.11 -2.07 6.23 32.15 0.20 -1.87 16 17 C -0.09 -1.44 5.14 -7.38 -0.04 -1.47 16 18 C -0.11 -1.71 6.33 32.94 0.21 -1.50 16 19 C -0.10 -2.45 5.99 32.94 0.20 -2.25 16 20 C -0.10 -2.46 5.63 33.35 0.19 -2.27 16 21 C 0.04 1.63 8.35 72.27 0.60 2.24 16 22 O -0.40 -19.07 12.40 -148.98 -1.85 -20.92 16 23 C 0.05 2.60 7.91 72.27 0.57 3.17 16 24 H 0.26 14.22 8.31 -92.70 -0.77 13.45 16 25 H 0.05 2.13 8.04 -2.39 -0.02 2.11 16 26 H 0.05 2.71 7.21 -2.39 -0.02 2.69 16 27 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.07 2.08 7.87 -2.39 -0.02 2.06 16 29 H 0.09 1.34 7.87 -2.39 -0.02 1.32 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.13 1.45 8.14 -2.39 -0.02 1.44 16 32 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.09 1.12 7.87 -2.39 -0.02 1.10 16 34 H 0.07 1.81 7.87 -2.39 -0.02 1.79 16 35 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.08 2.98 8.03 -2.39 -0.02 2.96 16 39 H 0.09 3.49 8.09 -2.39 -0.02 3.47 16 40 H 0.08 3.98 7.36 -2.39 -0.02 3.96 16 41 H 0.07 2.91 8.10 -2.39 -0.02 2.89 16 Total: -1.00 -64.44 330.73 4.80 -59.64 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 1.00 Total: 16.60 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: 3.52 Total: -8.70 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: 0.24 Total: -50.71 kcal Atomic # 8 Polarization: -59.87 SS G_CDS: -2.00 Total: -61.87 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -64.44 4.80 -59.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263547476.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.969 kcal (2) G-P(sol) polarization free energy of solvation -64.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds