Wall clock time and date at job start Tue Mar 31 2020 01:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99955 * 2 1 4 4 H 1.48495 * 109.47162 * 240.00149 * 3 2 1 5 5 H 1.48497 * 109.46973 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46741 * 120.00494 * 3 2 1 7 7 C 1.37877 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99707 * 185.21065 * 7 2 1 9 9 C 1.50696 * 120.00107 * 5.19824 * 7 2 1 10 10 C 1.53005 * 112.99693 * 65.16555 * 9 7 2 11 11 O 1.45198 * 109.47177 * 62.81129 * 10 9 7 12 12 C 1.34225 * 116.99972 * 179.97438 * 11 10 9 13 13 O 1.20820 * 119.99970 * 359.97438 * 12 11 10 14 14 C 1.50699 * 119.99728 * 180.02562 * 12 11 10 15 15 C 1.53004 * 109.47150 * 180.02562 * 14 12 11 16 16 H 1.09003 * 110.54019 * 52.38316 * 15 14 12 17 17 C 1.55241 * 110.46651 * 289.81094 * 15 14 12 18 18 C 1.54892 * 102.58575 * 203.39010 * 17 15 14 19 19 C 1.54270 * 104.31199 * 37.93159 * 18 17 15 20 20 H 1.09001 * 117.41084 * 116.30011 * 19 18 17 21 21 C 1.53002 * 118.19740 * 270.93086 * 19 18 17 22 22 C 1.53875 * 106.59857 * 336.32169 * 19 18 17 23 23 H 1.09002 * 121.32681 * 138.63025 * 22 19 18 24 24 C 1.54036 * 113.81734 * 196.99000 * 9 7 2 25 25 O 1.44445 * 85.42429 * 91.81318 * 24 9 7 26 26 C 1.44169 * 93.38009 * 24.08777 * 25 24 9 27 27 H 0.97003 * 119.99811 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46976 * 302.81189 * 10 9 7 29 29 H 1.08999 * 109.46977 * 182.81385 * 10 9 7 30 30 H 1.08995 * 109.47659 * 60.00264 * 14 12 11 31 31 H 1.08994 * 109.47502 * 299.99776 * 14 12 11 32 32 H 1.08999 * 110.89845 * 85.10024 * 17 15 14 33 33 H 1.08998 * 110.76508 * 321.62356 * 17 15 14 34 34 H 1.08991 * 110.48719 * 279.18590 * 18 17 15 35 35 H 1.09000 * 110.48233 * 156.67064 * 18 17 15 36 36 H 1.08994 * 117.45782 * 201.21612 * 21 19 18 37 37 H 1.08998 * 117.46006 * 346.03794 * 21 19 18 38 38 H 1.08998 * 113.86574 * 205.92011 * 24 9 7 39 39 H 1.09000 * 113.86661 * 337.62397 * 24 9 7 40 40 H 1.09006 * 113.86444 * 221.76592 * 26 25 24 41 41 H 1.09007 * 113.86408 * 90.06594 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0812 -1.1960 0.0844 9 6 1.2557 -2.4964 -0.1194 10 6 0.5477 -2.6581 -1.4661 11 8 1.5337 -2.6804 -2.5317 12 6 1.0735 -2.8179 -3.7850 13 8 -0.1139 -2.9168 -3.9851 14 6 2.0379 -2.8500 -4.9425 15 6 1.2602 -3.0131 -6.2500 16 1 0.4763 -2.2594 -6.3253 17 6 0.6534 -4.4388 -6.3465 18 6 0.4696 -4.6247 -7.8732 19 6 1.7104 -3.9484 -8.4919 20 1 2.4035 -4.5819 -9.0456 21 6 1.6309 -2.4569 -8.8238 22 6 2.2130 -2.9237 -7.4599 23 1 3.2769 -2.7959 -7.2599 24 6 2.0790 -3.7281 0.3024 25 8 1.5105 -3.5151 1.6131 26 6 0.3626 -2.8135 1.0949 27 1 -0.4850 0.8401 0.0004 28 1 -0.1351 -1.8225 -1.6203 29 1 -0.0142 -3.5921 -1.4713 30 1 2.7241 -3.6881 -4.8207 31 1 2.6033 -1.9186 -4.9704 32 1 -0.3067 -4.4883 -5.8329 33 1 1.3449 -5.1808 -5.9474 34 1 -0.4418 -4.1313 -8.2106 35 1 0.4456 -5.6842 -8.1282 36 1 2.3352 -2.0673 -9.5587 37 1 0.6436 -1.9950 -8.8285 38 1 1.7590 -4.6559 -0.1717 39 1 3.1572 -3.5743 0.2576 40 1 0.0823 -1.9358 1.6774 41 1 -0.4828 -3.4615 0.8634 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263548351.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:21 Heat of formation + Delta-G solvation = -83.773977 kcal Electronic energy + Delta-G solvation = -22311.486316 eV Core-core repulsion = 18965.205121 eV Total energy + Delta-G solvation = -3346.281194 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.15830 -39.37239 -38.78087 -35.68994 -32.94483 -32.67236 -30.57333 -29.83968 -26.24021 -25.38304 -25.00656 -23.89261 -22.82181 -20.66629 -20.02622 -19.46508 -18.99062 -16.89582 -16.52006 -15.98959 -15.90367 -15.40673 -15.01108 -14.76056 -14.34899 -14.28214 -13.84171 -13.61648 -13.16469 -12.92273 -12.68695 -12.17669 -12.02858 -11.74701 -11.62111 -11.27930 -11.18995 -10.98183 -10.80891 -10.78607 -10.67108 -10.45913 -10.18810 -10.03968 -9.93404 -9.71586 -9.50370 -9.36233 -9.06874 -8.74414 -8.31571 -6.18365 -4.21880 2.84940 3.27028 3.31607 3.34203 3.38977 3.50563 4.32642 4.42479 4.55134 4.65392 4.88612 4.99526 5.07318 5.17138 5.25717 5.29983 5.41374 5.43743 5.51127 5.61119 5.66657 5.83821 5.87153 5.90406 6.02871 6.07591 6.08753 6.14990 6.18011 6.23650 6.31674 6.39793 6.42592 6.59007 6.98797 7.15907 7.27752 7.37463 7.40990 7.77556 8.18246 8.50830 8.75347 9.41995 10.89722 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.020326 B = 0.004433 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.188565 B = 6315.163899 C = 7135.572897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.066 3.934 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.488 4.488 8 H 0.065 0.935 9 C 0.033 3.967 10 C 0.082 3.918 11 O -0.337 6.337 12 C 0.452 3.548 13 O -0.522 6.522 14 C -0.106 4.106 15 C -0.050 4.050 16 H 0.085 0.915 17 C -0.118 4.118 18 C -0.097 4.097 19 C -0.165 4.165 20 H 0.106 0.894 21 C -0.157 4.157 22 C -0.161 4.161 23 H 0.113 0.887 24 C 0.030 3.970 25 O -0.390 6.390 26 C 0.051 3.949 27 H 0.266 0.734 28 H 0.088 0.912 29 H 0.035 0.965 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.053 0.947 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.897 -6.520 -14.283 15.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.525 4.525 8 H 0.084 0.916 9 C 0.033 3.967 10 C 0.008 3.992 11 O -0.252 6.252 12 C 0.295 3.705 13 O -0.413 6.413 14 C -0.144 4.144 15 C -0.069 4.069 16 H 0.104 0.896 17 C -0.155 4.155 18 C -0.134 4.134 19 C -0.183 4.183 20 H 0.124 0.876 21 C -0.194 4.194 22 C -0.179 4.179 23 H 0.131 0.869 24 C -0.047 4.047 25 O -0.309 6.309 26 C -0.027 4.027 27 H 0.075 0.925 28 H 0.106 0.894 29 H 0.054 0.946 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.117 0.883 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.461 -6.491 -14.003 15.629 hybrid contribution 0.228 0.967 -0.202 1.013 sum 2.689 -5.524 -14.206 15.477 Atomic orbital electron populations 1.69874 1.05925 1.27362 1.49504 1.24972 0.94960 0.99358 0.94408 0.86532 0.79584 0.82426 0.78830 1.20056 1.21215 1.20023 1.20556 0.93220 0.88348 1.50409 0.91641 1.21082 0.92540 0.94553 0.88550 1.23467 0.90193 1.00100 0.85428 1.86496 1.42213 1.81416 1.15111 1.23533 0.88874 0.72851 0.85206 1.90587 1.18262 1.46397 1.86039 1.21350 0.97513 1.05439 0.90121 1.21436 0.96286 0.98534 0.90625 0.89648 1.22838 1.01803 0.95535 0.95353 1.21965 0.96325 1.00006 0.95133 1.23273 1.00451 0.91468 1.03101 0.87620 1.23433 1.02351 0.96155 0.97417 1.23645 0.99359 1.05686 0.89258 0.86882 1.24074 0.99445 0.97407 0.83756 1.89525 1.37450 1.77821 1.26086 1.23903 0.88178 0.94414 0.96157 0.92470 0.89403 0.94635 0.88121 0.87854 0.90146 0.91539 0.91514 0.91436 0.88573 0.88903 0.92867 0.90368 0.88346 0.93503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.12 11.22 55.43 0.62 -23.49 16 2 C 0.07 1.74 5.24 -17.82 -0.09 1.64 16 3 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 7 C -0.49 -12.90 8.13 -34.44 -0.28 -13.18 16 8 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.03 0.81 0.56 -154.58 -0.09 0.72 16 10 C 0.08 1.91 4.63 37.16 0.17 2.08 16 11 O -0.34 -7.27 10.01 -39.24 -0.39 -7.66 16 12 C 0.45 8.49 7.77 36.00 0.28 8.77 16 13 O -0.52 -10.92 14.49 -18.75 -0.27 -11.19 16 14 C -0.11 -1.45 5.30 -27.88 -0.15 -1.60 16 15 C -0.05 -0.63 2.26 -88.77 -0.20 -0.83 16 16 H 0.09 1.21 7.90 -51.93 -0.41 0.80 16 17 C -0.12 -1.42 5.77 -24.55 -0.14 -1.56 16 18 C -0.10 -0.97 6.61 -25.07 -0.17 -1.14 16 19 C -0.16 -1.56 6.85 -89.50 -0.61 -2.17 16 20 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 21 C -0.16 -1.45 10.21 -25.42 -0.26 -1.71 16 22 C -0.16 -1.66 6.45 -88.19 -0.57 -2.23 16 23 H 0.11 1.05 8.06 -51.93 -0.42 0.63 16 24 C 0.03 0.65 8.34 37.64 0.31 0.97 16 25 O -0.39 -9.32 12.41 -35.23 -0.44 -9.76 16 26 C 0.05 1.20 7.92 37.64 0.30 1.50 16 27 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.09 2.30 6.96 -51.93 -0.36 1.94 16 29 H 0.04 0.78 8.12 -51.93 -0.42 0.36 16 30 H 0.10 1.17 8.02 -51.93 -0.42 0.75 16 31 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.08 1.12 7.31 -51.93 -0.38 0.74 16 33 H 0.07 0.76 7.97 -51.93 -0.41 0.34 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.05 1.04 8.10 -51.93 -0.42 0.61 16 39 H 0.08 1.63 8.08 -51.93 -0.42 1.21 16 40 H 0.10 2.50 7.43 -51.93 -0.39 2.12 16 41 H 0.05 1.01 8.09 -51.92 -0.42 0.59 16 LS Contribution 336.06 15.07 5.06 5.06 Total: -1.00 -28.95 336.06 -8.48 -37.43 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -6.55 Total: 2.61 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -1.49 Total: -8.75 kcal Atomic # 7 Polarization: -24.12 SS G_CDS: 0.62 Total: -23.49 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -1.10 Total: -28.61 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.95 -8.48 -37.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263548351.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.344 kcal (2) G-P(sol) polarization free energy of solvation -28.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds