Wall clock time and date at job start Tue Mar 31 2020 01:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99955 * 2 1 4 4 H 1.48495 * 109.47162 * 240.00149 * 3 2 1 5 5 H 1.48497 * 109.46973 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46741 * 120.00494 * 3 2 1 7 7 C 1.37877 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99707 * 185.21065 * 7 2 1 9 9 C 1.50696 * 120.00107 * 5.19824 * 7 2 1 10 10 C 1.53005 * 112.99693 * 65.16555 * 9 7 2 11 11 O 1.45198 * 109.47177 * 62.81129 * 10 9 7 12 12 C 1.34225 * 116.99972 * 179.97438 * 11 10 9 13 13 O 1.20820 * 119.99970 * 359.97438 * 12 11 10 14 14 C 1.50699 * 119.99728 * 180.02562 * 12 11 10 15 15 C 1.53004 * 109.47150 * 180.02562 * 14 12 11 16 16 H 1.09003 * 110.54019 * 52.38316 * 15 14 12 17 17 C 1.55241 * 110.46651 * 289.81094 * 15 14 12 18 18 C 1.54892 * 102.58575 * 203.39010 * 17 15 14 19 19 C 1.54270 * 104.31199 * 37.93159 * 18 17 15 20 20 H 1.09001 * 117.41084 * 116.30011 * 19 18 17 21 21 C 1.53002 * 118.19740 * 270.93086 * 19 18 17 22 22 C 1.53875 * 106.59857 * 336.32169 * 19 18 17 23 23 H 1.09002 * 121.32681 * 138.63025 * 22 19 18 24 24 C 1.54036 * 113.81734 * 196.99000 * 9 7 2 25 25 O 1.44445 * 85.42429 * 91.81318 * 24 9 7 26 26 C 1.44169 * 93.38009 * 24.08777 * 25 24 9 27 27 H 0.97003 * 119.99811 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46976 * 302.81189 * 10 9 7 29 29 H 1.08999 * 109.46977 * 182.81385 * 10 9 7 30 30 H 1.08995 * 109.47659 * 60.00264 * 14 12 11 31 31 H 1.08994 * 109.47502 * 299.99776 * 14 12 11 32 32 H 1.08999 * 110.89845 * 85.10024 * 17 15 14 33 33 H 1.08998 * 110.76508 * 321.62356 * 17 15 14 34 34 H 1.08991 * 110.48719 * 279.18590 * 18 17 15 35 35 H 1.09000 * 110.48233 * 156.67064 * 18 17 15 36 36 H 1.08994 * 117.45782 * 201.21612 * 21 19 18 37 37 H 1.08998 * 117.46006 * 346.03794 * 21 19 18 38 38 H 1.08998 * 113.86574 * 205.92011 * 24 9 7 39 39 H 1.09000 * 113.86661 * 337.62397 * 24 9 7 40 40 H 1.09006 * 113.86444 * 221.76592 * 26 25 24 41 41 H 1.09007 * 113.86408 * 90.06594 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0812 -1.1960 0.0844 9 6 1.2557 -2.4964 -0.1194 10 6 0.5477 -2.6581 -1.4661 11 8 1.5337 -2.6804 -2.5317 12 6 1.0735 -2.8179 -3.7850 13 8 -0.1139 -2.9168 -3.9851 14 6 2.0379 -2.8500 -4.9425 15 6 1.2602 -3.0131 -6.2500 16 1 0.4763 -2.2594 -6.3253 17 6 0.6534 -4.4388 -6.3465 18 6 0.4696 -4.6247 -7.8732 19 6 1.7104 -3.9484 -8.4919 20 1 2.4035 -4.5819 -9.0456 21 6 1.6309 -2.4569 -8.8238 22 6 2.2130 -2.9237 -7.4599 23 1 3.2769 -2.7959 -7.2599 24 6 2.0790 -3.7281 0.3024 25 8 1.5105 -3.5151 1.6131 26 6 0.3626 -2.8135 1.0949 27 1 -0.4850 0.8401 0.0004 28 1 -0.1351 -1.8225 -1.6203 29 1 -0.0142 -3.5921 -1.4713 30 1 2.7241 -3.6881 -4.8207 31 1 2.6033 -1.9186 -4.9704 32 1 -0.3067 -4.4883 -5.8329 33 1 1.3449 -5.1808 -5.9474 34 1 -0.4418 -4.1313 -8.2106 35 1 0.4456 -5.6842 -8.1282 36 1 2.3352 -2.0673 -9.5587 37 1 0.6436 -1.9950 -8.8285 38 1 1.7590 -4.6559 -0.1717 39 1 3.1572 -3.5743 0.2576 40 1 0.0823 -1.9358 1.6774 41 1 -0.4828 -3.4615 0.8634 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263548351.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:20 Heat of formation + Delta-G solvation = -98.729024 kcal Electronic energy + Delta-G solvation = -22312.134815 eV Core-core repulsion = 18965.205121 eV Total energy + Delta-G solvation = -3346.929694 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.61347 -40.92711 -40.04214 -37.32679 -34.90991 -33.73045 -31.91113 -31.28546 -27.69362 -27.18301 -26.76549 -25.53160 -23.66923 -21.86045 -21.12147 -20.87588 -20.35257 -18.48689 -18.23547 -17.54033 -17.32774 -16.83209 -16.55132 -16.20195 -16.17661 -16.00815 -15.28813 -14.87027 -14.30162 -14.03524 -13.80315 -13.77717 -13.68467 -13.40417 -12.91200 -12.82710 -12.65034 -12.34997 -12.19210 -12.06800 -11.87714 -11.77665 -11.65719 -11.56741 -11.27378 -11.18748 -10.93231 -10.85791 -10.68707 -10.51189 -10.21877 -8.19328 -6.28492 1.34681 1.43067 1.43313 1.50812 1.93246 2.40396 2.72855 2.99367 3.21756 3.51914 3.62360 3.81049 3.88584 4.14443 4.22861 4.26740 4.30754 4.38442 4.45614 4.47291 4.50566 4.54243 4.59348 4.62664 4.68565 4.78954 4.87510 4.96040 4.97495 5.10213 5.16537 5.20263 5.22711 5.33837 5.38205 5.46236 5.51661 5.52464 5.71898 5.78884 6.22606 6.70884 6.93263 7.37733 8.87248 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.020326 B = 0.004433 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.188565 B = 6315.163899 C = 7135.572897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.023 3.977 3 Si 0.953 3.047 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.503 4.503 8 H 0.060 0.940 9 C 0.017 3.983 10 C 0.094 3.906 11 O -0.347 6.347 12 C 0.446 3.554 13 O -0.549 6.549 14 C -0.097 4.097 15 C -0.051 4.051 16 H 0.059 0.941 17 C -0.120 4.120 18 C -0.096 4.096 19 C -0.158 4.158 20 H 0.125 0.875 21 C -0.155 4.155 22 C -0.167 4.167 23 H 0.130 0.870 24 C 0.040 3.960 25 O -0.404 6.404 26 C 0.054 3.946 27 H 0.264 0.736 28 H 0.052 0.948 29 H 0.045 0.955 30 H 0.129 0.871 31 H 0.117 0.883 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.115 0.885 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.703 -7.194 -15.921 18.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.177 4.177 3 Si 0.779 3.221 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.541 4.541 8 H 0.078 0.922 9 C 0.017 3.983 10 C 0.020 3.980 11 O -0.263 6.263 12 C 0.291 3.709 13 O -0.440 6.440 14 C -0.134 4.134 15 C -0.069 4.069 16 H 0.078 0.922 17 C -0.157 4.157 18 C -0.134 4.134 19 C -0.176 4.176 20 H 0.143 0.857 21 C -0.192 4.192 22 C -0.185 4.185 23 H 0.148 0.852 24 C -0.036 4.036 25 O -0.323 6.323 26 C -0.023 4.023 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.147 0.853 31 H 0.135 0.865 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.101 0.899 36 H 0.134 0.866 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.092 0.908 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.277 -7.173 -15.651 17.740 hybrid contribution -0.378 1.147 0.287 1.241 sum 3.900 -6.026 -15.364 16.958 Atomic orbital electron populations 1.69983 1.06983 1.27749 1.50200 1.25642 0.95664 1.02179 0.94254 0.85675 0.78499 0.78989 0.78966 1.19443 1.21127 1.19632 1.20805 0.93168 0.89714 1.50399 0.92195 1.21152 0.93245 0.94960 0.88966 1.23084 0.89929 0.99005 0.85960 1.86502 1.41836 1.81957 1.15973 1.24620 0.89583 0.71507 0.85207 1.90579 1.19825 1.47484 1.86132 1.21515 0.96718 1.07234 0.87962 1.21395 0.96231 0.98053 0.91261 0.92206 1.22815 1.00559 0.95605 0.96723 1.21956 0.96669 1.01098 0.93629 1.23337 1.00013 0.91629 1.02580 0.85717 1.23534 1.02400 0.96195 0.97092 1.23599 0.99527 1.06976 0.88421 0.85249 1.24171 0.99655 0.97395 0.82369 1.89497 1.37644 1.77837 1.27363 1.23818 0.88856 0.94091 0.95585 0.92719 0.92936 0.93677 0.85322 0.86497 0.92916 0.90615 0.92149 0.89932 0.86637 0.89752 0.90098 0.89537 0.90778 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.37 11.22 21.45 0.24 -50.13 16 2 C 0.02 1.21 5.24 84.65 0.44 1.65 16 3 Si 0.95 42.61 29.54 68.60 2.03 44.64 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.50 -26.69 8.13 25.60 0.21 -26.48 16 8 H 0.06 3.16 7.81 -2.91 -0.02 3.14 16 9 C 0.02 0.84 0.56 -52.23 -0.03 0.81 16 10 C 0.09 4.43 4.63 71.98 0.33 4.77 16 11 O -0.35 -14.83 10.01 -51.37 -0.51 -15.35 16 12 C 0.45 16.62 7.77 71.24 0.55 17.18 16 13 O -0.55 -23.40 14.49 21.98 0.32 -23.08 16 14 C -0.10 -2.48 5.30 29.85 0.16 -2.32 16 15 C -0.05 -1.22 2.26 -9.60 -0.02 -1.24 16 16 H 0.06 1.72 7.90 -2.39 -0.02 1.71 16 17 C -0.12 -2.77 5.77 32.01 0.18 -2.59 16 18 C -0.10 -1.78 6.61 31.67 0.21 -1.57 16 19 C -0.16 -2.53 6.85 -10.07 -0.07 -2.60 16 20 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 21 C -0.16 -2.51 10.21 31.44 0.32 -2.19 16 22 C -0.17 -3.01 6.45 -9.22 -0.06 -3.07 16 23 H 0.13 1.93 8.06 -2.39 -0.02 1.91 16 24 C 0.04 1.70 8.34 72.30 0.60 2.30 16 25 O -0.40 -18.99 12.41 -148.98 -1.85 -20.84 16 26 C 0.05 2.55 7.92 72.29 0.57 3.12 16 27 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 28 H 0.05 2.82 6.96 -2.38 -0.02 2.81 16 29 H 0.05 1.98 8.12 -2.39 -0.02 1.96 16 30 H 0.13 2.60 8.02 -2.39 -0.02 2.58 16 31 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.05 1.50 7.31 -2.39 -0.02 1.48 16 33 H 0.08 1.59 7.97 -2.39 -0.02 1.58 16 34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.08 1.27 8.14 -2.39 -0.02 1.26 16 36 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.08 2.94 8.10 -2.39 -0.02 2.92 16 39 H 0.09 3.46 8.08 -2.39 -0.02 3.44 16 40 H 0.07 3.86 7.43 -2.38 -0.02 3.84 16 41 H 0.07 2.87 8.09 -2.38 -0.02 2.86 16 Total: -1.00 -62.61 336.06 4.64 -57.97 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 1.01 Total: 19.01 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: 3.41 Total: -12.22 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: 0.24 Total: -50.13 kcal Atomic # 8 Polarization: -57.23 SS G_CDS: -2.04 Total: -59.27 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -62.61 4.64 -57.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263548351.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.757 kcal (2) G-P(sol) polarization free energy of solvation -62.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds