Wall clock time and date at job start Tue Mar 31 2020 01:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99965 * 2 1 4 4 H 1.48501 * 109.47075 * 269.99814 * 3 2 1 5 5 H 1.48496 * 109.47416 * 29.99811 * 3 2 1 6 6 H 1.48504 * 109.46980 * 150.00014 * 3 2 1 7 7 C 1.37875 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99627 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00475 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47073 * 60.00152 * 9 7 2 11 11 O 1.45198 * 109.47706 * 180.02562 * 9 7 2 12 12 C 1.34218 * 117.00321 * 210.00276 * 11 9 7 13 13 O 1.20828 * 120.00376 * 359.97438 * 12 11 9 14 14 C 1.50705 * 120.00090 * 180.02562 * 12 11 9 15 15 C 1.53002 * 109.47283 * 179.97438 * 14 12 11 16 16 C 1.52990 * 109.47223 * 179.97438 * 15 14 12 17 17 C 1.50703 * 109.47146 * 180.02562 * 16 15 14 18 18 O 1.20750 * 120.00052 * 359.97438 * 17 16 15 19 19 C 1.50706 * 119.99769 * 179.97438 * 17 16 15 20 20 C 1.53001 * 117.49756 * 223.62102 * 19 17 16 21 21 C 1.52999 * 59.99986 * 252.51526 * 20 19 17 22 22 C 1.53000 * 109.47054 * 300.00549 * 9 7 2 23 23 C 1.53001 * 117.49657 * 248.74202 * 22 9 7 24 24 C 1.53005 * 117.49917 * 180.08227 * 22 9 7 25 25 H 0.96998 * 119.99527 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46928 * 59.99981 * 14 12 11 27 27 H 1.09000 * 109.46684 * 299.99875 * 14 12 11 28 28 H 1.09004 * 109.47059 * 59.99468 * 15 14 12 29 29 H 1.09003 * 109.47004 * 300.00106 * 15 14 12 30 30 H 1.09003 * 109.47350 * 60.00376 * 16 15 14 31 31 H 1.09003 * 109.47328 * 300.00044 * 16 15 14 32 32 H 1.08996 * 115.55128 * 9.33567 * 19 17 16 33 33 H 1.09004 * 117.49834 * 0.02562 * 20 19 17 34 34 H 1.08997 * 117.49999 * 145.02096 * 20 19 17 35 35 H 1.09004 * 117.50109 * 252.51157 * 21 20 19 36 36 H 1.08998 * 117.52032 * 107.48340 * 21 20 19 37 37 H 1.09005 * 115.55400 * 34.41342 * 22 9 7 38 38 H 1.08998 * 117.49947 * 0.02562 * 23 22 9 39 39 H 1.09007 * 117.49442 * 145.02272 * 23 22 9 40 40 H 1.08992 * 117.49939 * 214.97380 * 24 22 9 41 41 H 1.08992 * 117.49829 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6242 -2.5567 -0.8903 11 8 2.1946 -3.6029 -0.0005 12 6 1.8034 -4.7390 -0.5985 13 8 0.7086 -4.8093 -1.1049 14 6 2.7292 -5.9275 -0.6374 15 6 2.0451 -7.0831 -1.3706 16 6 2.9853 -8.2894 -1.4107 17 6 2.3117 -9.4275 -2.1334 18 8 1.1949 -9.2882 -2.5709 19 6 3.0321 -10.7393 -2.3102 20 6 2.9472 -11.4127 -3.6815 21 6 2.1777 -11.9951 -2.4942 22 6 0.3719 -2.5805 1.2490 23 6 0.7538 -3.6085 2.3158 24 6 -0.4766 -3.8400 1.4350 25 1 -0.4849 0.8401 -0.0004 26 1 2.9690 -6.2347 0.3805 27 1 3.6462 -5.6567 -1.1608 28 1 1.8049 -6.7761 -2.3886 29 1 1.1283 -7.3537 -0.8469 30 1 3.2258 -8.5966 -0.3929 31 1 3.9019 -8.0185 -1.9347 32 1 3.9648 -10.8420 -1.7556 33 1 2.3706 -10.9066 -4.4558 34 1 3.8242 -11.9584 -4.0294 35 1 2.5485 -12.9241 -2.0610 36 1 1.0946 -11.8726 -2.4870 37 1 -0.0499 -1.6347 1.5895 38 1 1.6317 -4.2266 2.1277 39 1 0.5830 -3.3392 3.3582 40 1 -1.4562 -3.7230 1.8983 41 1 -0.4087 -4.6105 0.6671 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263660108.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:36 Heat of formation + Delta-G solvation = -89.230342 kcal Electronic energy + Delta-G solvation = -21528.214685 eV Core-core repulsion = 18181.696885 eV Total energy + Delta-G solvation = -3346.517800 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.17822 -39.68949 -36.72857 -36.37082 -34.72781 -34.20327 -32.79580 -29.55172 -27.78040 -25.21409 -23.33287 -22.81343 -21.95026 -21.41689 -20.17014 -19.50088 -18.88790 -17.16533 -16.75567 -16.58837 -16.19137 -15.54326 -15.46663 -15.10265 -14.67962 -14.33781 -14.10656 -13.57579 -13.04963 -12.81064 -12.47037 -12.20701 -12.00824 -11.88743 -11.66748 -11.35805 -11.26326 -11.07070 -11.00697 -10.94763 -10.87827 -10.76902 -10.51534 -10.29303 -10.06441 -9.81906 -9.56139 -9.46250 -9.09001 -8.51248 -8.42746 -6.17977 -4.25153 1.67876 3.01858 3.24873 3.30354 3.33705 3.46772 3.50412 3.83277 4.33908 4.40172 4.53533 4.68527 4.79744 4.93756 4.95844 5.00696 5.14538 5.22374 5.24770 5.41060 5.44918 5.55139 5.59588 5.68769 5.72580 5.86958 5.91317 6.11201 6.12068 6.16911 6.36399 6.46915 6.71180 6.93895 7.03179 7.21985 7.37135 7.58773 7.62044 7.87340 8.13717 8.64780 8.89770 9.39365 10.89256 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.033309 B = 0.003070 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.401902 B = 9118.285564 C = 9476.833007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.910 3.090 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.518 4.518 8 H 0.070 0.930 9 C 0.247 3.753 10 H 0.052 0.948 11 O -0.354 6.354 12 C 0.448 3.552 13 O -0.515 6.515 14 C -0.116 4.116 15 C -0.101 4.101 16 C -0.164 4.164 17 C 0.381 3.619 18 O -0.449 6.449 19 C -0.223 4.223 20 C -0.151 4.151 21 C -0.154 4.154 22 C -0.115 4.115 23 C -0.194 4.194 24 C -0.210 4.210 25 H 0.266 0.734 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.125 0.875 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.129 0.871 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.270 -19.407 -1.623 21.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.139 4.139 3 Si 0.737 3.263 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.556 4.556 8 H 0.088 0.912 9 C 0.195 3.805 10 H 0.069 0.931 11 O -0.270 6.270 12 C 0.291 3.709 13 O -0.405 6.405 14 C -0.154 4.154 15 C -0.138 4.138 16 C -0.202 4.202 17 C 0.256 3.744 18 O -0.322 6.322 19 C -0.242 4.242 20 C -0.188 4.188 21 C -0.191 4.191 22 C -0.134 4.134 23 C -0.231 4.231 24 C -0.247 4.247 25 H 0.076 0.924 26 H 0.116 0.884 27 H 0.118 0.882 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.143 0.857 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.146 0.854 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.170 -19.160 -1.987 20.553 hybrid contribution 0.391 0.915 0.201 1.015 sum 7.561 -18.244 -1.786 19.830 Atomic orbital electron populations 1.69989 1.05908 1.27295 1.49074 1.24915 0.95052 0.99304 0.94670 0.86305 0.79651 0.82078 0.78301 1.20409 1.20973 1.19577 1.20954 0.93925 0.88417 1.52288 0.91212 1.20120 0.86019 0.80437 0.93962 0.93060 1.86483 1.49258 1.22259 1.69025 1.23366 0.86813 0.85259 0.75469 1.90603 1.22736 1.83489 1.43622 1.21342 0.98763 0.91796 1.03508 1.21213 0.98180 0.91939 1.02491 1.22063 1.00778 0.94888 1.02432 1.23802 0.86396 0.88426 0.75742 1.90428 1.19348 1.82866 1.39539 1.22913 1.03384 0.94091 1.03822 1.22939 1.03035 1.02454 0.90414 1.22959 0.99313 0.95169 1.01681 1.23011 0.99245 0.93682 0.97448 1.22794 0.98532 1.06004 0.95807 1.23153 0.94437 1.03658 1.03481 0.92411 0.88359 0.88225 0.90448 0.90471 0.88109 0.88056 0.85685 0.88050 0.87810 0.87908 0.87795 0.85357 0.89831 0.90476 0.90574 0.88790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.15 11.59 55.43 0.64 -24.51 16 2 C 0.06 1.73 5.20 -17.82 -0.09 1.64 16 3 Si 0.91 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.52 -14.44 8.90 -34.44 -0.31 -14.74 16 8 H 0.07 1.91 7.81 -52.48 -0.41 1.50 16 9 C 0.25 6.58 2.41 -27.88 -0.07 6.51 16 10 H 0.05 1.53 7.16 -51.93 -0.37 1.16 16 11 O -0.35 -8.23 8.38 -39.23 -0.33 -8.56 16 12 C 0.45 9.09 6.91 36.01 0.25 9.34 16 13 O -0.51 -12.00 13.03 -18.75 -0.24 -12.24 16 14 C -0.12 -1.59 5.81 -27.88 -0.16 -1.75 16 15 C -0.10 -1.32 3.79 -26.74 -0.10 -1.42 16 16 C -0.16 -1.44 5.64 -27.89 -0.16 -1.60 16 17 C 0.38 3.96 6.92 -29.03 -0.20 3.76 16 18 O -0.45 -6.52 16.05 6.01 0.10 -6.42 16 19 C -0.22 -1.67 6.13 -91.77 -0.56 -2.23 16 20 C -0.15 -1.06 10.14 -26.73 -0.27 -1.33 16 21 C -0.15 -1.12 10.05 -26.73 -0.27 -1.38 16 22 C -0.12 -2.88 5.27 -90.62 -0.48 -3.36 16 23 C -0.19 -4.12 9.80 -26.69 -0.26 -4.38 16 24 C -0.21 -4.68 9.85 -26.69 -0.26 -4.95 16 25 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.08 1.16 8.06 -51.93 -0.42 0.74 16 29 H 0.08 1.15 8.06 -51.93 -0.42 0.73 16 30 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.13 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.10 0.91 7.89 -51.93 -0.41 0.50 16 37 H 0.13 3.50 6.46 -51.93 -0.34 3.16 16 38 H 0.08 1.70 6.91 -51.93 -0.36 1.35 16 39 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 40 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 41 H 0.09 2.17 5.37 -51.93 -0.28 1.89 16 LS Contribution 344.16 15.07 5.19 5.19 Total: -1.00 -32.45 344.16 -8.98 -41.43 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -6.36 Total: 5.04 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -2.94 Total: -15.89 kcal Atomic # 7 Polarization: -25.15 SS G_CDS: 0.64 Total: -24.51 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.48 Total: -27.22 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.45 -8.98 -41.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263660108.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.801 kcal (2) G-P(sol) polarization free energy of solvation -32.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds