Wall clock time and date at job start Tue Mar 31 2020 01:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99965 * 2 1 4 4 H 1.48501 * 109.47075 * 269.99814 * 3 2 1 5 5 H 1.48496 * 109.47416 * 29.99811 * 3 2 1 6 6 H 1.48504 * 109.46980 * 150.00014 * 3 2 1 7 7 C 1.37875 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99627 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00475 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47073 * 60.00152 * 9 7 2 11 11 O 1.45198 * 109.47706 * 180.02562 * 9 7 2 12 12 C 1.34218 * 117.00321 * 210.00276 * 11 9 7 13 13 O 1.20828 * 120.00376 * 359.97438 * 12 11 9 14 14 C 1.50705 * 120.00090 * 180.02562 * 12 11 9 15 15 C 1.53002 * 109.47283 * 179.97438 * 14 12 11 16 16 C 1.52990 * 109.47223 * 179.97438 * 15 14 12 17 17 C 1.50703 * 109.47146 * 180.02562 * 16 15 14 18 18 O 1.20750 * 120.00052 * 359.97438 * 17 16 15 19 19 C 1.50706 * 119.99769 * 179.97438 * 17 16 15 20 20 C 1.53001 * 117.49756 * 223.62102 * 19 17 16 21 21 C 1.52999 * 59.99986 * 252.51526 * 20 19 17 22 22 C 1.53000 * 109.47054 * 300.00549 * 9 7 2 23 23 C 1.53001 * 117.49657 * 248.74202 * 22 9 7 24 24 C 1.53005 * 117.49917 * 180.08227 * 22 9 7 25 25 H 0.96998 * 119.99527 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46928 * 59.99981 * 14 12 11 27 27 H 1.09000 * 109.46684 * 299.99875 * 14 12 11 28 28 H 1.09004 * 109.47059 * 59.99468 * 15 14 12 29 29 H 1.09003 * 109.47004 * 300.00106 * 15 14 12 30 30 H 1.09003 * 109.47350 * 60.00376 * 16 15 14 31 31 H 1.09003 * 109.47328 * 300.00044 * 16 15 14 32 32 H 1.08996 * 115.55128 * 9.33567 * 19 17 16 33 33 H 1.09004 * 117.49834 * 0.02562 * 20 19 17 34 34 H 1.08997 * 117.49999 * 145.02096 * 20 19 17 35 35 H 1.09004 * 117.50109 * 252.51157 * 21 20 19 36 36 H 1.08998 * 117.52032 * 107.48340 * 21 20 19 37 37 H 1.09005 * 115.55400 * 34.41342 * 22 9 7 38 38 H 1.08998 * 117.49947 * 0.02562 * 23 22 9 39 39 H 1.09007 * 117.49442 * 145.02272 * 23 22 9 40 40 H 1.08992 * 117.49939 * 214.97380 * 24 22 9 41 41 H 1.08992 * 117.49829 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6242 -2.5567 -0.8903 11 8 2.1946 -3.6029 -0.0005 12 6 1.8034 -4.7390 -0.5985 13 8 0.7086 -4.8093 -1.1049 14 6 2.7292 -5.9275 -0.6374 15 6 2.0451 -7.0831 -1.3706 16 6 2.9853 -8.2894 -1.4107 17 6 2.3117 -9.4275 -2.1334 18 8 1.1949 -9.2882 -2.5709 19 6 3.0321 -10.7393 -2.3102 20 6 2.9472 -11.4127 -3.6815 21 6 2.1777 -11.9951 -2.4942 22 6 0.3719 -2.5805 1.2490 23 6 0.7538 -3.6085 2.3158 24 6 -0.4766 -3.8400 1.4350 25 1 -0.4849 0.8401 -0.0004 26 1 2.9690 -6.2347 0.3805 27 1 3.6462 -5.6567 -1.1608 28 1 1.8049 -6.7761 -2.3886 29 1 1.1283 -7.3537 -0.8469 30 1 3.2258 -8.5966 -0.3929 31 1 3.9019 -8.0185 -1.9347 32 1 3.9648 -10.8420 -1.7556 33 1 2.3706 -10.9066 -4.4558 34 1 3.8242 -11.9584 -4.0294 35 1 2.5485 -12.9241 -2.0610 36 1 1.0946 -11.8726 -2.4870 37 1 -0.0499 -1.6347 1.5895 38 1 1.6317 -4.2266 2.1277 39 1 0.5830 -3.3392 3.3582 40 1 -1.4562 -3.7230 1.8983 41 1 -0.4087 -4.6105 0.6671 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263660108.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:35 Heat of formation + Delta-G solvation = -107.006367 kcal Electronic energy + Delta-G solvation = -21528.985512 eV Core-core repulsion = 18181.696885 eV Total energy + Delta-G solvation = -3347.288627 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.53651 -40.88320 -38.43399 -37.09745 -36.50716 -35.34155 -34.87697 -30.75206 -29.61304 -26.30027 -25.19800 -23.34888 -23.26200 -23.00769 -21.63428 -20.75486 -20.20590 -18.89343 -18.36856 -17.81892 -17.61274 -17.05322 -16.67844 -16.32506 -15.92420 -15.70018 -15.33304 -14.95730 -14.47650 -14.25498 -13.68796 -13.59921 -13.26305 -13.19783 -12.91265 -12.88942 -12.78901 -12.45998 -12.41554 -12.33718 -12.20613 -11.95874 -11.76557 -11.54516 -11.43792 -11.38327 -11.34840 -11.02642 -10.53368 -10.48018 -10.43075 -8.27020 -6.43830 0.91798 1.39659 1.41887 1.43645 1.55149 2.04354 2.42489 2.92608 2.97584 3.01940 3.14599 3.74700 3.86037 3.96662 4.01989 4.04620 4.06580 4.12780 4.23562 4.26369 4.28798 4.59192 4.60673 4.65052 4.72113 4.74898 4.81423 4.93142 4.98166 5.02479 5.10737 5.11297 5.19111 5.24315 5.28443 5.31787 5.52741 5.56060 5.93301 6.14294 6.61855 6.62791 7.02949 7.27692 8.80531 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.033309 B = 0.003070 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.401902 B = 9118.285564 C = 9476.833007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.015 3.985 3 Si 0.981 3.019 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.260 1.260 7 C -0.543 4.543 8 H 0.070 0.930 9 C 0.254 3.746 10 H 0.000 1.000 11 O -0.358 6.358 12 C 0.437 3.563 13 O -0.553 6.553 14 C -0.102 4.102 15 C -0.097 4.097 16 C -0.155 4.155 17 C 0.376 3.624 18 O -0.506 6.506 19 C -0.221 4.221 20 C -0.151 4.151 21 C -0.160 4.160 22 C -0.147 4.147 23 C -0.161 4.161 24 C -0.204 4.204 25 H 0.269 0.731 26 H 0.135 0.865 27 H 0.132 0.868 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.162 0.838 33 H 0.079 0.921 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.090 0.910 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.488 -20.702 -0.174 23.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.184 4.184 3 Si 0.804 3.196 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.184 1.184 7 C -0.581 4.581 8 H 0.088 0.912 9 C 0.200 3.800 10 H 0.018 0.982 11 O -0.274 6.274 12 C 0.282 3.718 13 O -0.445 6.445 14 C -0.139 4.139 15 C -0.135 4.135 16 C -0.192 4.192 17 C 0.255 3.745 18 O -0.383 6.383 19 C -0.240 4.240 20 C -0.188 4.188 21 C -0.197 4.197 22 C -0.166 4.166 23 C -0.198 4.198 24 C -0.241 4.241 25 H 0.078 0.922 26 H 0.153 0.847 27 H 0.150 0.850 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.154 0.846 31 H 0.152 0.848 32 H 0.179 0.821 33 H 0.098 0.902 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.097 0.903 37 H 0.120 0.880 38 H 0.114 0.886 39 H 0.122 0.878 40 H 0.109 0.891 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.415 -20.485 -0.531 22.987 hybrid contribution -0.667 1.254 -0.311 1.454 sum 9.748 -19.232 -0.842 21.577 Atomic orbital electron populations 1.70130 1.07559 1.28299 1.49371 1.25854 0.95892 1.02934 0.93768 0.85213 0.78608 0.77252 0.78530 1.19881 1.20274 1.18379 1.21265 0.94063 0.89598 1.53130 0.91216 1.19675 0.86060 0.81581 0.92677 0.98238 1.86469 1.48450 1.22666 1.69853 1.24816 0.87448 0.85674 0.73848 1.90592 1.24962 1.83935 1.45027 1.21530 0.97853 0.88336 1.06160 1.21122 0.98460 0.93757 1.00118 1.22102 1.00275 0.92059 1.04764 1.24480 0.85642 0.90073 0.74256 1.90429 1.21866 1.83953 1.42056 1.23021 1.04237 0.92212 1.04480 1.23014 1.03684 1.02299 0.89792 1.23018 0.98121 0.96257 1.02256 1.22706 1.01330 0.93790 0.98761 1.22894 0.97958 1.02887 0.96081 1.23119 0.95785 1.01563 1.03661 0.92236 0.84707 0.85023 0.93576 0.93255 0.84550 0.84764 0.82059 0.90197 0.85062 0.85320 0.90298 0.88024 0.88648 0.87832 0.89108 0.89940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.75 11.59 21.45 0.25 -53.50 16 2 C 0.02 0.85 5.20 84.65 0.44 1.29 16 3 Si 0.98 43.21 29.54 68.60 2.03 45.23 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.54 -31.00 8.90 25.60 0.23 -30.78 16 8 H 0.07 3.86 7.81 -2.91 -0.02 3.84 16 9 C 0.25 14.03 2.41 29.85 0.07 14.10 16 10 H 0.00 0.00 7.16 -2.39 -0.02 -0.02 16 11 O -0.36 -16.79 8.38 -51.30 -0.43 -17.22 16 12 C 0.44 17.88 6.91 71.24 0.49 18.37 16 13 O -0.55 -27.15 13.03 21.96 0.29 -26.86 16 14 C -0.10 -2.54 5.81 29.85 0.17 -2.37 16 15 C -0.10 -2.46 3.79 30.59 0.12 -2.34 16 16 C -0.16 -2.24 5.64 29.85 0.17 -2.07 16 17 C 0.38 7.37 6.92 29.10 0.20 7.57 16 18 O -0.51 -15.37 16.05 -1.42 -0.02 -15.39 16 19 C -0.22 -2.70 6.13 -11.54 -0.07 -2.78 16 20 C -0.15 -1.85 10.14 30.59 0.31 -1.54 16 21 C -0.16 -2.07 10.05 30.59 0.31 -1.76 16 22 C -0.15 -7.54 5.27 -10.79 -0.06 -7.59 16 23 C -0.16 -6.61 9.80 30.62 0.30 -6.31 16 24 C -0.20 -9.17 9.85 30.62 0.30 -8.87 16 25 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 26 H 0.14 2.47 8.14 -2.39 -0.02 2.45 16 27 H 0.13 2.53 8.14 -2.39 -0.02 2.51 16 28 H 0.05 1.44 8.06 -2.38 -0.02 1.42 16 29 H 0.05 1.51 8.06 -2.39 -0.02 1.49 16 30 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.16 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.13 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.08 1.42 7.89 -2.39 -0.02 1.41 16 37 H 0.10 5.75 6.46 -2.38 -0.02 5.73 16 38 H 0.10 3.67 6.91 -2.39 -0.02 3.65 16 39 H 0.10 3.70 8.14 -2.38 -0.02 3.68 16 40 H 0.09 3.75 8.14 -2.39 -0.02 3.73 16 41 H 0.08 3.91 5.37 -2.39 -0.01 3.90 16 Total: -1.00 -77.39 344.16 6.10 -71.28 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 1.01 Total: 21.53 kcal Atomic # 6 Polarization: -28.06 SS G_CDS: 2.98 Total: -25.08 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: 0.25 Total: -53.50 kcal Atomic # 8 Polarization: -59.31 SS G_CDS: -0.17 Total: -59.47 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -77.39 6.10 -71.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263660108.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.722 kcal (2) G-P(sol) polarization free energy of solvation -77.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds