Wall clock time and date at job start Tue Mar 31 2020 02:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00197 * 2 1 4 4 H 1.48498 * 109.47226 * 270.00597 * 3 2 1 5 5 H 1.48504 * 109.47221 * 29.99895 * 3 2 1 6 6 H 1.48491 * 109.47532 * 149.99969 * 3 2 1 7 7 C 1.38810 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00006 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00212 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00476 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47341 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.51567 * 304.89850 * 11 10 9 13 13 C 1.52882 * 109.62516 * 184.90565 * 11 10 9 14 14 N 1.47147 * 108.60822 * 187.89547 * 13 11 10 15 15 C 1.34777 * 120.98552 * 230.50251 * 14 13 11 16 16 O 1.21615 * 120.00071 * 175.35609 * 15 14 13 17 17 C 1.47097 * 119.99678 * 355.08049 * 15 14 13 18 18 C 1.32618 * 124.61689 * 170.09533 * 17 15 14 19 19 C 1.51116 * 110.75833 * 179.89940 * 18 17 15 20 20 C 1.54582 * 104.89054 * 343.75068 * 19 18 17 21 21 C 1.51106 * 124.62340 * 350.39332 * 17 15 14 22 22 C 1.47158 * 118.03204 * 50.23332 * 14 13 11 23 23 C 1.53296 * 108.38368 * 309.70933 * 22 14 13 24 24 O 1.42964 * 109.22062 * 52.30735 * 23 22 14 25 25 H 0.96999 * 119.99802 * 359.97438 * 1 2 3 26 26 H 0.97007 * 119.99504 * 359.97438 * 9 7 2 27 27 H 1.09006 * 109.47196 * 59.99932 * 10 9 7 28 28 H 1.09000 * 109.47422 * 300.00222 * 10 9 7 29 29 H 1.09007 * 109.61478 * 68.08157 * 13 11 10 30 30 H 1.08994 * 109.52619 * 307.66785 * 13 11 10 31 31 H 1.07995 * 124.62243 * 359.97438 * 18 17 15 32 32 H 1.08999 * 110.50058 * 224.81208 * 19 18 17 33 33 H 1.08998 * 110.27419 * 102.57196 * 19 18 17 34 34 H 1.09001 * 110.97981 * 266.73796 * 20 19 18 35 35 H 1.08999 * 111.01245 * 142.95488 * 20 19 18 36 36 H 1.08995 * 110.36837 * 315.40325 * 21 17 15 37 37 H 1.08997 * 110.36773 * 77.72368 * 21 17 15 38 38 H 1.08990 * 109.68159 * 69.43674 * 22 14 13 39 39 H 1.09003 * 109.67627 * 189.95628 * 22 14 13 40 40 H 1.09001 * 109.50905 * 172.22536 * 23 22 14 41 41 H 1.08998 * 109.51473 * 292.38324 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0027 11 6 1.0639 -4.8197 -0.0031 12 1 0.3808 -4.7151 0.8399 13 6 1.8208 -6.1424 0.1188 14 7 0.8689 -7.2477 -0.0743 15 6 0.8008 -8.2664 0.8055 16 8 -0.0489 -9.1267 0.6751 17 6 1.7581 -8.3411 1.9198 18 6 1.6648 -9.1858 2.9379 19 6 2.8145 -8.9944 3.8997 20 6 3.8629 -8.1794 3.1084 21 6 2.9782 -7.4614 2.0638 22 6 -0.0109 -7.2047 -1.2531 23 6 -0.6823 -5.8276 -1.3054 24 8 0.3203 -4.8117 -1.2242 25 1 -0.4850 0.8401 0.0004 26 1 0.3556 -2.3880 -0.0016 27 1 2.6848 -3.7153 0.8872 28 1 2.6848 -3.7138 -0.8927 29 1 2.2726 -6.2156 1.1082 30 1 2.5976 -6.1893 -0.6443 31 1 0.8755 -9.9124 3.0620 32 1 3.2284 -9.9581 4.1965 33 1 2.4845 -8.4378 4.7768 34 1 4.5838 -8.8375 2.6232 35 1 4.3669 -7.4599 3.7538 36 1 3.5035 -7.3824 1.1121 37 1 2.6929 -6.4729 2.4237 38 1 0.5783 -7.3604 -2.1567 39 1 -0.7712 -7.9816 -1.1722 40 1 -1.2296 -5.7248 -2.2424 41 1 -1.3717 -5.7266 -0.4672 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273245004.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:47 Heat of formation + Delta-G solvation = -24.703344 kcal Electronic energy + Delta-G solvation = -22398.808535 eV Core-core repulsion = 19087.381586 eV Total energy + Delta-G solvation = -3311.426949 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.71821 -38.70568 -37.74778 -34.90080 -34.56865 -32.28897 -30.54747 -29.68656 -28.76846 -27.92169 -25.58087 -23.60250 -22.90220 -21.63984 -20.89433 -20.35288 -18.55072 -17.17833 -16.87968 -16.55698 -16.14071 -15.98193 -15.15958 -15.05782 -14.82471 -14.35215 -14.08964 -13.35406 -13.25871 -13.05352 -13.02834 -12.66804 -12.45349 -12.34128 -12.22168 -11.90061 -11.64322 -11.44713 -11.09166 -10.94920 -10.81297 -10.77656 -10.34483 -10.09602 -9.91517 -9.79917 -9.65563 -9.20116 -8.88125 -8.47251 -6.90907 -5.73935 -3.03080 1.19571 2.83078 3.13795 3.44997 3.49584 3.51551 3.97661 4.15775 4.26997 4.56107 4.61423 4.70190 4.82902 4.93297 5.01560 5.15893 5.23653 5.28697 5.31519 5.37753 5.43044 5.50011 5.57729 5.60027 5.65829 5.73017 5.79204 5.85263 5.89024 5.95863 6.02271 6.25197 6.29362 6.37745 6.50224 6.67412 7.28984 7.48662 7.70174 8.05743 8.43918 9.55631 10.12726 10.48160 11.48807 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020252 B = 0.004196 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.266208 B = 6671.947960 C = 7716.425875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.727 5.727 10 C 0.164 3.836 11 C 0.072 3.928 12 H 0.062 0.938 13 C 0.040 3.960 14 N -0.605 5.605 15 C 0.569 3.431 16 O -0.549 6.549 17 C -0.193 4.193 18 C -0.073 4.073 19 C -0.108 4.108 20 C -0.126 4.126 21 C -0.098 4.098 22 C 0.076 3.924 23 C 0.047 3.953 24 O -0.359 6.359 25 H 0.255 0.745 26 H 0.387 0.613 27 H 0.034 0.966 28 H 0.029 0.971 29 H 0.130 0.870 30 H 0.078 0.922 31 H 0.137 0.863 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.339 -18.983 4.681 20.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.371 5.371 10 C 0.036 3.964 11 C 0.013 3.987 12 H 0.080 0.920 13 C -0.083 4.083 14 N -0.338 5.338 15 C 0.360 3.640 16 O -0.429 6.429 17 C -0.196 4.196 18 C -0.092 4.092 19 C -0.144 4.144 20 C -0.163 4.163 21 C -0.135 4.135 22 C -0.046 4.046 23 C -0.031 4.031 24 O -0.277 6.277 25 H 0.065 0.935 26 H 0.221 0.779 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.147 0.853 30 H 0.096 0.904 31 H 0.155 0.845 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.093 0.907 39 H 0.116 0.884 40 H 0.122 0.878 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.064 -19.164 4.447 20.314 hybrid contribution -0.049 0.798 -0.005 0.799 sum 5.015 -18.366 4.442 19.550 Atomic orbital electron populations 1.69677 1.05143 1.25611 1.57520 1.24745 0.95503 0.97682 1.02942 0.86185 0.78601 0.83825 0.77532 1.21708 1.21800 1.20747 1.19216 0.90998 0.84078 1.42933 0.91127 1.42238 1.06047 0.99488 1.89327 1.20609 0.92383 0.84742 0.98685 1.22738 0.94187 0.94205 0.87593 0.92013 1.23547 0.92487 0.86122 1.06106 1.47980 1.38503 1.22582 1.24697 1.18023 0.83502 0.80947 0.81564 1.90761 1.37337 1.39859 1.74922 1.21777 0.99004 1.01691 0.97127 1.24042 0.97339 0.94993 0.92853 1.21493 0.93826 1.01112 0.98013 1.22511 0.97251 0.99140 0.97440 1.21664 0.93353 0.98093 1.00356 1.22359 0.94965 0.99616 0.87684 1.22920 0.90789 0.86467 1.02905 1.88148 1.49536 1.52239 1.37782 0.93523 0.77880 0.94825 0.95296 0.85314 0.90384 0.84518 0.90211 0.89485 0.90757 0.90147 0.89864 0.88827 0.90662 0.88383 0.87792 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.51 13.06 55.49 0.72 -27.78 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.67 5.55 -59.91 -0.33 -19.00 16 10 C 0.16 3.23 5.93 -4.05 -0.02 3.21 16 11 C 0.07 1.20 2.80 -26.79 -0.07 1.12 16 12 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 13 C 0.04 0.52 4.63 -3.75 -0.02 0.50 16 14 N -0.60 -8.33 3.03 -173.92 -0.53 -8.85 16 15 C 0.57 8.22 7.67 -12.67 -0.10 8.13 16 16 O -0.55 -9.46 16.26 5.26 0.09 -9.38 16 17 C -0.19 -2.21 5.94 -102.73 -0.61 -2.82 16 18 C -0.07 -0.71 10.44 -36.00 -0.38 -1.09 16 19 C -0.11 -0.76 6.80 -26.85 -0.18 -0.94 16 20 C -0.13 -0.89 7.16 -25.07 -0.18 -1.07 16 21 C -0.10 -0.89 4.37 -26.86 -0.12 -1.00 16 22 C 0.08 1.00 6.65 -3.53 -0.02 0.98 16 23 C 0.05 0.67 6.98 37.31 0.26 0.93 16 24 O -0.36 -6.48 10.33 -35.23 -0.36 -6.85 16 25 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.39 10.70 7.67 -40.82 -0.31 10.38 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.13 1.44 2.55 -67.54 -0.17 1.26 16 30 H 0.08 0.96 8.13 -51.93 -0.42 0.54 16 31 H 0.14 1.33 8.05 -52.49 -0.42 0.91 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.72 6.87 -51.93 -0.36 0.36 16 37 H 0.09 0.84 6.69 -51.93 -0.35 0.49 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.10 1.28 7.06 -51.93 -0.37 0.91 16 40 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 328.56 15.07 4.95 4.95 Total: -1.00 -33.99 328.56 -8.35 -42.33 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -6.17 Total: 6.66 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -1.69 Total: 0.56 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: -0.13 Total: -55.64 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.28 Total: -16.22 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.99 -8.35 -42.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273245004.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.630 kcal (2) G-P(sol) polarization free energy of solvation -33.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds