Wall clock time and date at job start Tue Mar 31 2020 02:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00197 * 2 1 4 4 H 1.48498 * 109.47226 * 270.00597 * 3 2 1 5 5 H 1.48504 * 109.47221 * 29.99895 * 3 2 1 6 6 H 1.48491 * 109.47532 * 149.99969 * 3 2 1 7 7 C 1.38810 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00006 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00212 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00476 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47341 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.51567 * 304.89850 * 11 10 9 13 13 C 1.52882 * 109.62516 * 184.90565 * 11 10 9 14 14 N 1.47147 * 108.60822 * 187.89547 * 13 11 10 15 15 C 1.34777 * 120.98552 * 230.50251 * 14 13 11 16 16 O 1.21615 * 120.00071 * 175.35609 * 15 14 13 17 17 C 1.47097 * 119.99678 * 355.08049 * 15 14 13 18 18 C 1.32618 * 124.61689 * 170.09533 * 17 15 14 19 19 C 1.51116 * 110.75833 * 179.89940 * 18 17 15 20 20 C 1.54582 * 104.89054 * 343.75068 * 19 18 17 21 21 C 1.51106 * 124.62340 * 350.39332 * 17 15 14 22 22 C 1.47158 * 118.03204 * 50.23332 * 14 13 11 23 23 C 1.53296 * 108.38368 * 309.70933 * 22 14 13 24 24 O 1.42964 * 109.22062 * 52.30735 * 23 22 14 25 25 H 0.96999 * 119.99802 * 359.97438 * 1 2 3 26 26 H 0.97007 * 119.99504 * 359.97438 * 9 7 2 27 27 H 1.09006 * 109.47196 * 59.99932 * 10 9 7 28 28 H 1.09000 * 109.47422 * 300.00222 * 10 9 7 29 29 H 1.09007 * 109.61478 * 68.08157 * 13 11 10 30 30 H 1.08994 * 109.52619 * 307.66785 * 13 11 10 31 31 H 1.07995 * 124.62243 * 359.97438 * 18 17 15 32 32 H 1.08999 * 110.50058 * 224.81208 * 19 18 17 33 33 H 1.08998 * 110.27419 * 102.57196 * 19 18 17 34 34 H 1.09001 * 110.97981 * 266.73796 * 20 19 18 35 35 H 1.08999 * 111.01245 * 142.95488 * 20 19 18 36 36 H 1.08995 * 110.36837 * 315.40325 * 21 17 15 37 37 H 1.08997 * 110.36773 * 77.72368 * 21 17 15 38 38 H 1.08990 * 109.68159 * 69.43674 * 22 14 13 39 39 H 1.09003 * 109.67627 * 189.95628 * 22 14 13 40 40 H 1.09001 * 109.50905 * 172.22536 * 23 22 14 41 41 H 1.08998 * 109.51473 * 292.38324 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0027 11 6 1.0639 -4.8197 -0.0031 12 1 0.3808 -4.7151 0.8399 13 6 1.8208 -6.1424 0.1188 14 7 0.8689 -7.2477 -0.0743 15 6 0.8008 -8.2664 0.8055 16 8 -0.0489 -9.1267 0.6751 17 6 1.7581 -8.3411 1.9198 18 6 1.6648 -9.1858 2.9379 19 6 2.8145 -8.9944 3.8997 20 6 3.8629 -8.1794 3.1084 21 6 2.9782 -7.4614 2.0638 22 6 -0.0109 -7.2047 -1.2531 23 6 -0.6823 -5.8276 -1.3054 24 8 0.3203 -4.8117 -1.2242 25 1 -0.4850 0.8401 0.0004 26 1 0.3556 -2.3880 -0.0016 27 1 2.6848 -3.7153 0.8872 28 1 2.6848 -3.7138 -0.8927 29 1 2.2726 -6.2156 1.1082 30 1 2.5976 -6.1893 -0.6443 31 1 0.8755 -9.9124 3.0620 32 1 3.2284 -9.9581 4.1965 33 1 2.4845 -8.4378 4.7768 34 1 4.5838 -8.8375 2.6232 35 1 4.3669 -7.4599 3.7538 36 1 3.5035 -7.3824 1.1121 37 1 2.6929 -6.4729 2.4237 38 1 0.5783 -7.3604 -2.1567 39 1 -0.7712 -7.9816 -1.1722 40 1 -1.2296 -5.7248 -2.2424 41 1 -1.3717 -5.7266 -0.4672 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273245004.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:46 Heat of formation + Delta-G solvation = -48.064399 kcal Electronic energy + Delta-G solvation = -22399.821546 eV Core-core repulsion = 19087.381586 eV Total energy + Delta-G solvation = -3312.439960 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.77219 -39.80668 -38.69174 -36.57212 -35.89880 -33.94565 -32.10281 -30.63064 -29.66760 -29.00246 -27.15890 -24.94279 -24.40021 -22.80052 -21.87606 -21.40647 -19.47806 -19.19430 -17.86335 -17.78987 -17.31948 -16.85728 -16.64190 -16.21541 -16.05268 -15.67040 -15.55898 -15.00328 -14.50568 -14.37139 -14.08771 -13.92489 -13.64227 -13.36026 -13.01735 -13.01101 -12.76387 -12.67745 -12.48920 -12.27179 -12.07612 -12.04086 -11.91897 -11.75849 -11.41901 -11.22121 -10.93923 -10.82183 -10.01924 -9.58016 -8.98262 -7.91577 -5.21103 0.31808 1.50018 1.52535 1.60669 1.77787 2.13045 2.58845 2.73334 3.31343 3.43070 3.55335 3.59869 3.76816 3.92952 4.01132 4.07077 4.10806 4.19083 4.29229 4.34485 4.45417 4.47372 4.61754 4.66539 4.74321 4.77453 4.79987 4.86809 4.97293 4.99045 5.12053 5.20070 5.21588 5.36057 5.41430 5.50872 5.51877 6.19948 6.22709 6.29634 6.97118 7.35687 8.10538 8.33660 9.32418 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020252 B = 0.004196 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.266208 B = 6671.947960 C = 7716.425875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.078 4.078 3 Si 0.976 3.024 4 H -0.289 1.289 5 H -0.297 1.297 6 H -0.264 1.264 7 C -0.244 4.244 8 H 0.083 0.917 9 N -0.744 5.744 10 C 0.161 3.839 11 C 0.078 3.922 12 H 0.047 0.953 13 C 0.051 3.949 14 N -0.608 5.608 15 C 0.563 3.437 16 O -0.587 6.587 17 C -0.222 4.222 18 C -0.060 4.060 19 C -0.105 4.105 20 C -0.120 4.120 21 C -0.099 4.099 22 C 0.079 3.921 23 C 0.047 3.953 24 O -0.389 6.389 25 H 0.250 0.750 26 H 0.373 0.627 27 H 0.058 0.942 28 H 0.030 0.970 29 H 0.152 0.848 30 H 0.091 0.909 31 H 0.131 0.869 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.123 0.877 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.677 -19.691 5.575 21.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.270 4.270 3 Si 0.805 3.195 4 H -0.216 1.216 5 H -0.224 1.224 6 H -0.188 1.188 7 C -0.376 4.376 8 H 0.101 0.899 9 N -0.386 5.386 10 C 0.035 3.965 11 C 0.019 3.981 12 H 0.065 0.935 13 C -0.071 4.071 14 N -0.339 5.339 15 C 0.355 3.645 16 O -0.470 6.470 17 C -0.225 4.225 18 C -0.079 4.079 19 C -0.141 4.141 20 C -0.157 4.157 21 C -0.135 4.135 22 C -0.044 4.044 23 C -0.030 4.030 24 O -0.308 6.308 25 H 0.059 0.941 26 H 0.204 0.796 27 H 0.076 0.924 28 H 0.048 0.952 29 H 0.169 0.831 30 H 0.109 0.891 31 H 0.149 0.851 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.100 0.900 35 H 0.114 0.886 36 H 0.105 0.895 37 H 0.112 0.888 38 H 0.107 0.893 39 H 0.115 0.885 40 H 0.141 0.859 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.457 -19.901 5.341 21.913 hybrid contribution -0.806 0.900 -0.274 1.239 sum 6.651 -19.001 5.067 20.759 Atomic orbital electron populations 1.69851 1.06862 1.25989 1.59626 1.25615 0.96346 1.01296 1.03736 0.85101 0.77842 0.79236 0.77346 1.21650 1.22410 1.18820 1.19698 0.91721 0.85094 1.41040 0.89934 1.42477 1.05651 1.01074 1.89391 1.20810 0.92868 0.83394 0.99465 1.22599 0.93610 0.95096 0.86775 0.93532 1.23552 0.91801 0.83743 1.07996 1.48067 1.38561 1.22591 1.24703 1.18567 0.83514 0.80375 0.82021 1.90730 1.39082 1.41218 1.75935 1.21829 0.99928 1.03788 0.96967 1.24375 0.97565 0.93350 0.92653 1.21574 0.92646 1.02370 0.97531 1.22526 0.96944 0.99338 0.96929 1.21669 0.92652 0.97814 1.01411 1.22343 0.95171 0.98632 0.88206 1.23060 0.90089 0.86319 1.03553 1.88090 1.50552 1.53878 1.38257 0.94141 0.79609 0.92391 0.95167 0.83100 0.89122 0.85086 0.88310 0.88274 0.89962 0.88629 0.89459 0.88783 0.89338 0.88487 0.85903 0.93819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.64 13.06 21.65 0.28 -60.35 16 2 C -0.08 -4.50 5.50 84.86 0.47 -4.04 16 3 Si 0.98 45.96 29.55 68.60 2.03 47.99 16 4 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 5 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 7 C -0.24 -13.57 9.99 84.03 0.84 -12.73 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 9 N -0.74 -38.30 5.55 -343.47 -1.91 -40.21 16 10 C 0.16 6.20 5.93 86.38 0.51 6.71 16 11 C 0.08 2.57 2.80 30.55 0.09 2.66 16 12 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 13 C 0.05 1.25 4.63 86.22 0.40 1.65 16 14 N -0.61 -16.30 3.03 -822.42 -2.49 -18.79 16 15 C 0.56 16.04 7.67 86.57 0.66 16.70 16 16 O -0.59 -20.45 16.26 -4.08 -0.07 -20.52 16 17 C -0.22 -4.78 5.94 -18.57 -0.11 -4.89 16 18 C -0.06 -1.07 10.44 24.66 0.26 -0.81 16 19 C -0.10 -1.15 6.80 30.52 0.21 -0.94 16 20 C -0.12 -1.28 7.16 31.67 0.23 -1.05 16 21 C -0.10 -1.53 4.37 30.51 0.13 -1.40 16 22 C 0.08 2.04 6.65 86.35 0.57 2.61 16 23 C 0.05 1.34 6.98 72.08 0.50 1.84 16 24 O -0.39 -14.08 10.33 -148.98 -1.54 -15.62 16 25 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 26 H 0.37 21.07 7.67 -92.70 -0.71 20.36 16 27 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 28 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.15 3.06 2.55 -17.05 -0.04 3.01 16 30 H 0.09 2.04 8.13 -2.39 -0.02 2.02 16 31 H 0.13 2.45 8.05 -2.91 -0.02 2.43 16 32 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.09 1.27 6.87 -2.39 -0.02 1.25 16 37 H 0.09 1.43 6.69 -2.39 -0.02 1.42 16 38 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.10 2.54 7.06 -2.39 -0.02 2.52 16 40 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 41 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -73.78 328.56 1.36 -72.42 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: 0.29 Total: 28.75 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 4.76 Total: 6.31 kcal Atomic # 7 Polarization: -115.24 SS G_CDS: -4.11 Total: -119.35 kcal Atomic # 8 Polarization: -34.53 SS G_CDS: -1.61 Total: -36.13 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -73.78 1.36 -72.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273245004.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.359 kcal (2) G-P(sol) polarization free energy of solvation -73.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds