Wall clock time and date at job start Tue Mar 31 2020 02:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99793 * 2 1 4 4 H 1.48502 * 109.47276 * 270.00161 * 3 2 1 5 5 H 1.48504 * 109.47105 * 30.00111 * 3 2 1 6 6 H 1.48502 * 109.46993 * 149.99986 * 3 2 1 7 7 C 1.38805 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00779 * 359.97438 * 7 2 1 9 9 N 1.36946 * 119.99972 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00182 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47065 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.51012 * 60.10360 * 11 10 9 13 13 C 1.53716 * 109.44060 * 180.38628 * 11 10 9 14 14 N 1.47154 * 108.15974 * 172.37264 * 13 11 10 15 15 C 1.34780 * 120.98197 * 129.43311 * 14 13 11 16 16 O 1.21618 * 119.99601 * 355.68980 * 15 14 13 17 17 C 1.47101 * 120.00035 * 175.69721 * 15 14 13 18 18 C 1.32878 * 124.76788 * 169.95481 * 17 15 14 19 19 C 1.51116 * 110.79745 * 179.97438 * 18 17 15 20 20 C 1.54575 * 104.84031 * 343.42941 * 19 18 17 21 21 C 1.51116 * 124.61942 * 349.97032 * 17 15 14 22 22 C 1.47151 * 118.03737 * 309.16048 * 14 13 11 23 23 C 1.53296 * 108.38526 * 50.78183 * 22 14 13 24 24 O 1.42958 * 109.22585 * 307.70221 * 23 22 14 25 25 H 0.97000 * 120.00869 * 0.02562 * 1 2 3 26 26 H 0.96998 * 119.99362 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47088 * 59.99471 * 10 9 7 28 28 H 1.09002 * 109.46854 * 299.99987 * 10 9 7 29 29 H 1.09003 * 109.83981 * 52.69249 * 13 11 10 30 30 H 1.09004 * 109.74555 * 291.99874 * 13 11 10 31 31 H 1.07994 * 124.58342 * 359.96992 * 18 17 15 32 32 H 1.09000 * 110.36601 * 224.58736 * 19 18 17 33 33 H 1.08996 * 110.45701 * 102.31870 * 19 18 17 34 34 H 1.09004 * 110.98289 * 266.92310 * 20 19 18 35 35 H 1.08999 * 111.01655 * 143.14307 * 20 19 18 36 36 H 1.09009 * 110.36108 * 77.73929 * 21 17 15 37 37 H 1.08998 * 110.36795 * 315.53091 * 21 17 15 38 38 H 1.08999 * 109.68214 * 170.50923 * 22 14 13 39 39 H 1.08998 * 109.68156 * 291.02384 * 22 14 13 40 40 H 1.09004 * 109.50668 * 67.62566 * 23 22 14 41 41 H 1.08998 * 109.51622 * 187.77437 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4707 0.0000 11 6 5.6164 -2.1910 0.0000 12 1 5.8807 -1.6211 0.8907 13 6 6.3844 -3.5226 -0.0098 14 7 7.8138 -3.2263 -0.1952 15 6 8.7435 -3.7509 0.6277 16 8 8.4011 -4.4168 1.5859 17 6 10.1723 -3.5177 0.3667 18 6 11.1555 -3.8217 1.2072 19 6 12.4973 -3.4481 0.6210 20 6 12.2290 -3.2521 -0.8886 21 6 10.7244 -2.8981 -0.8961 22 6 8.1988 -2.3453 -1.3092 23 6 7.3428 -1.0755 -1.2394 24 8 5.9628 -1.4414 -1.1670 25 1 -0.4851 0.8400 -0.0004 26 1 3.8645 -0.3620 0.0004 27 1 3.8492 -3.0421 -0.8902 28 1 3.8485 -3.0425 0.8898 29 1 6.0298 -4.1481 -0.8291 30 1 6.2366 -4.0399 0.9382 31 1 11.0145 -4.2743 2.1776 32 1 13.2166 -4.2520 0.7772 33 1 12.8624 -2.5220 1.0648 34 1 12.4161 -4.1729 -1.4411 35 1 12.8251 -2.4317 -1.2883 36 1 10.5891 -1.8166 -0.8785 37 1 10.2383 -3.3263 -1.7727 38 1 9.2530 -2.0826 -1.2221 39 1 8.0245 -2.8545 -2.2570 40 1 7.6143 -0.5017 -0.3532 41 1 7.5132 -0.4720 -2.1309 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273245005.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:49 Heat of formation + Delta-G solvation = -19.580807 kcal Electronic energy + Delta-G solvation = -22243.371990 eV Core-core repulsion = 18932.167171 eV Total energy + Delta-G solvation = -3311.204819 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.80033 -38.86057 -37.81074 -35.24258 -34.51674 -32.31712 -30.78928 -29.86605 -28.97240 -28.21231 -25.73874 -23.71000 -22.68553 -21.56342 -21.12187 -20.44996 -18.71275 -17.65009 -16.96752 -16.57267 -16.21270 -16.16486 -15.45950 -15.14038 -14.67037 -14.41260 -14.31916 -13.58850 -13.33678 -13.25878 -12.96198 -12.78357 -12.49391 -12.47910 -12.31026 -12.05844 -11.85837 -11.65270 -11.21492 -11.16951 -10.92907 -10.82315 -10.42961 -10.15581 -10.00035 -9.85114 -9.54545 -9.33591 -8.86520 -8.57046 -7.18307 -5.72167 -3.07129 1.07435 2.74428 3.04837 3.42636 3.47009 3.49277 3.82166 4.01047 4.10167 4.43822 4.50039 4.64238 4.65580 4.77151 4.87079 5.02485 5.06052 5.11678 5.13550 5.22228 5.27026 5.33498 5.44661 5.54928 5.56513 5.57531 5.63101 5.67658 5.75781 5.82176 5.90012 5.96940 6.14808 6.29977 6.48875 6.61820 7.21866 7.33474 7.99554 8.03592 8.46681 9.26211 9.98573 10.19160 11.46249 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.034678 B = 0.003643 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.230001 B = 7684.126347 C = 8052.028019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.004 3.996 3 Si 0.887 3.113 4 H -0.283 1.283 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.243 4.243 8 H 0.091 0.909 9 N -0.750 5.750 10 C 0.168 3.832 11 C 0.070 3.930 12 H 0.063 0.937 13 C 0.085 3.915 14 N -0.606 5.606 15 C 0.567 3.433 16 O -0.542 6.542 17 C -0.195 4.195 18 C -0.071 4.071 19 C -0.108 4.108 20 C -0.126 4.126 21 C -0.096 4.096 22 C 0.031 3.969 23 C 0.044 3.956 24 O -0.362 6.362 25 H 0.259 0.741 26 H 0.365 0.635 27 H 0.037 0.963 28 H 0.044 0.956 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.138 0.862 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.128 0.872 39 H 0.077 0.923 40 H 0.051 0.949 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.594 -5.674 -2.952 29.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.192 4.192 3 Si 0.718 3.282 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.372 4.372 8 H 0.108 0.892 9 N -0.396 5.396 10 C 0.040 3.960 11 C 0.011 3.989 12 H 0.081 0.919 13 C -0.037 4.037 14 N -0.339 5.339 15 C 0.357 3.643 16 O -0.420 6.420 17 C -0.198 4.198 18 C -0.091 4.091 19 C -0.145 4.145 20 C -0.164 4.164 21 C -0.132 4.132 22 C -0.091 4.091 23 C -0.034 4.034 24 O -0.280 6.280 25 H 0.069 0.931 26 H 0.198 0.802 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.098 0.902 30 H 0.121 0.879 31 H 0.156 0.844 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.145 0.855 39 H 0.095 0.905 40 H 0.070 0.930 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 28.016 -6.064 -2.600 28.782 hybrid contribution 0.619 1.192 0.127 1.349 sum 28.635 -4.871 -2.473 29.151 Atomic orbital electron populations 1.69702 1.05087 1.25804 1.57747 1.24649 0.95230 0.97230 1.02054 0.86496 0.79070 0.84857 0.77811 1.20997 1.21833 1.20477 1.19064 0.80505 0.94814 1.42858 0.89151 1.42552 1.03940 1.02046 1.91044 1.20613 0.85503 0.90257 0.99634 1.22931 0.96830 0.90754 0.88340 0.91941 1.22418 0.78906 0.98044 1.04379 1.47977 1.07013 1.48532 1.30407 1.18006 0.85260 0.79216 0.81824 1.90796 1.81961 1.40398 1.28894 1.21840 0.92675 1.06027 0.99272 1.24136 0.93857 0.92663 0.98435 1.21490 0.95306 1.02257 0.95412 1.22516 0.95527 1.02343 0.96004 1.21628 0.95440 1.00100 0.96045 1.23644 1.03327 0.92104 0.90013 1.22965 0.82902 0.95001 1.02567 1.88127 1.23733 1.73203 1.42933 0.93090 0.80232 0.94479 0.93790 0.90173 0.87873 0.84384 0.90108 0.89516 0.90663 0.90311 0.89272 0.89913 0.85518 0.90507 0.93024 0.87806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.07 13.97 55.49 0.78 -29.29 16 2 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 3 Si 0.89 22.95 27.74 -169.99 -4.71 18.23 16 4 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 5 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 6 H -0.28 -6.85 6.52 56.52 0.37 -6.48 16 7 C -0.24 -7.12 10.47 -15.06 -0.16 -7.28 16 8 H 0.09 2.80 8.06 -52.48 -0.42 2.38 16 9 N -0.75 -18.81 5.30 -59.91 -0.32 -19.13 16 10 C 0.17 3.39 5.96 -4.04 -0.02 3.37 16 11 C 0.07 1.18 2.88 -26.36 -0.08 1.10 16 12 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 13 C 0.09 1.24 5.96 -3.31 -0.02 1.22 16 14 N -0.61 -7.82 3.01 -173.41 -0.52 -8.34 16 15 C 0.57 7.75 7.67 -12.66 -0.10 7.65 16 16 O -0.54 -9.33 16.28 5.26 0.09 -9.24 16 17 C -0.20 -1.93 5.96 -102.67 -0.61 -2.54 16 18 C -0.07 -0.61 10.46 -35.95 -0.38 -0.98 16 19 C -0.11 -0.58 6.80 -26.85 -0.18 -0.77 16 20 C -0.13 -0.62 7.16 -25.08 -0.18 -0.80 16 21 C -0.10 -0.62 4.37 -26.85 -0.12 -0.73 16 22 C 0.03 0.31 5.39 -3.53 -0.02 0.29 16 23 C 0.04 0.51 6.98 37.31 0.26 0.78 16 24 O -0.36 -6.07 10.13 -35.23 -0.36 -6.43 16 25 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 26 H 0.36 9.08 5.41 -40.82 -0.22 8.86 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.10 1.57 7.06 -51.93 -0.37 1.20 16 31 H 0.14 1.23 8.05 -52.49 -0.42 0.80 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.09 0.47 6.71 -51.92 -0.35 0.12 16 37 H 0.08 0.50 6.85 -51.93 -0.36 0.15 16 38 H 0.13 0.91 2.49 -69.79 -0.17 0.74 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 325.23 15.07 4.90 4.90 Total: -1.00 -35.86 325.23 -7.98 -43.84 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -6.13 Total: 4.14 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -1.70 Total: 1.32 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: -0.07 Total: -56.77 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.27 Total: -15.67 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -4.71 Total: 18.23 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.86 -7.98 -43.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273245005.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.257 kcal (2) G-P(sol) polarization free energy of solvation -35.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds