Wall clock time and date at job start Tue Mar 31 2020 02:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99793 * 2 1 4 4 H 1.48502 * 109.47276 * 270.00161 * 3 2 1 5 5 H 1.48504 * 109.47105 * 30.00111 * 3 2 1 6 6 H 1.48502 * 109.46993 * 149.99986 * 3 2 1 7 7 C 1.38805 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00779 * 359.97438 * 7 2 1 9 9 N 1.36946 * 119.99972 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00182 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47065 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.51012 * 60.10360 * 11 10 9 13 13 C 1.53716 * 109.44060 * 180.38628 * 11 10 9 14 14 N 1.47154 * 108.15974 * 172.37264 * 13 11 10 15 15 C 1.34780 * 120.98197 * 129.43311 * 14 13 11 16 16 O 1.21618 * 119.99601 * 355.68980 * 15 14 13 17 17 C 1.47101 * 120.00035 * 175.69721 * 15 14 13 18 18 C 1.32878 * 124.76788 * 169.95481 * 17 15 14 19 19 C 1.51116 * 110.79745 * 179.97438 * 18 17 15 20 20 C 1.54575 * 104.84031 * 343.42941 * 19 18 17 21 21 C 1.51116 * 124.61942 * 349.97032 * 17 15 14 22 22 C 1.47151 * 118.03737 * 309.16048 * 14 13 11 23 23 C 1.53296 * 108.38526 * 50.78183 * 22 14 13 24 24 O 1.42958 * 109.22585 * 307.70221 * 23 22 14 25 25 H 0.97000 * 120.00869 * 0.02562 * 1 2 3 26 26 H 0.96998 * 119.99362 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47088 * 59.99471 * 10 9 7 28 28 H 1.09002 * 109.46854 * 299.99987 * 10 9 7 29 29 H 1.09003 * 109.83981 * 52.69249 * 13 11 10 30 30 H 1.09004 * 109.74555 * 291.99874 * 13 11 10 31 31 H 1.07994 * 124.58342 * 359.96992 * 18 17 15 32 32 H 1.09000 * 110.36601 * 224.58736 * 19 18 17 33 33 H 1.08996 * 110.45701 * 102.31870 * 19 18 17 34 34 H 1.09004 * 110.98289 * 266.92310 * 20 19 18 35 35 H 1.08999 * 111.01655 * 143.14307 * 20 19 18 36 36 H 1.09009 * 110.36108 * 77.73929 * 21 17 15 37 37 H 1.08998 * 110.36795 * 315.53091 * 21 17 15 38 38 H 1.08999 * 109.68214 * 170.50923 * 22 14 13 39 39 H 1.08998 * 109.68156 * 291.02384 * 22 14 13 40 40 H 1.09004 * 109.50668 * 67.62566 * 23 22 14 41 41 H 1.08998 * 109.51622 * 187.77437 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4707 0.0000 11 6 5.6164 -2.1910 0.0000 12 1 5.8807 -1.6211 0.8907 13 6 6.3844 -3.5226 -0.0098 14 7 7.8138 -3.2263 -0.1952 15 6 8.7435 -3.7509 0.6277 16 8 8.4011 -4.4168 1.5859 17 6 10.1723 -3.5177 0.3667 18 6 11.1555 -3.8217 1.2072 19 6 12.4973 -3.4481 0.6210 20 6 12.2290 -3.2521 -0.8886 21 6 10.7244 -2.8981 -0.8961 22 6 8.1988 -2.3453 -1.3092 23 6 7.3428 -1.0755 -1.2394 24 8 5.9628 -1.4414 -1.1670 25 1 -0.4851 0.8400 -0.0004 26 1 3.8645 -0.3620 0.0004 27 1 3.8492 -3.0421 -0.8902 28 1 3.8485 -3.0425 0.8898 29 1 6.0298 -4.1481 -0.8291 30 1 6.2366 -4.0399 0.9382 31 1 11.0145 -4.2743 2.1776 32 1 13.2166 -4.2520 0.7772 33 1 12.8624 -2.5220 1.0648 34 1 12.4161 -4.1729 -1.4411 35 1 12.8251 -2.4317 -1.2883 36 1 10.5891 -1.8166 -0.8785 37 1 10.2383 -3.3263 -1.7727 38 1 9.2530 -2.0826 -1.2221 39 1 8.0245 -2.8545 -2.2570 40 1 7.6143 -0.5017 -0.3532 41 1 7.5132 -0.4720 -2.1309 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273245005.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:48 Heat of formation + Delta-G solvation = -45.360792 kcal Electronic energy + Delta-G solvation = -22244.489894 eV Core-core repulsion = 18932.167171 eV Total energy + Delta-G solvation = -3312.322723 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.75123 -39.85639 -38.65136 -36.86277 -35.85433 -34.05757 -32.47907 -30.53405 -29.75560 -29.24202 -27.21366 -24.77966 -24.27137 -22.79305 -21.99431 -21.44590 -19.81875 -19.45254 -17.86574 -17.74348 -17.22671 -16.94600 -16.75405 -16.23226 -16.13995 -15.69267 -15.54595 -14.98230 -14.66560 -14.45708 -14.24252 -13.91005 -13.73099 -13.63351 -13.13271 -13.02196 -12.87730 -12.67581 -12.51705 -12.34095 -12.07600 -12.04441 -11.96227 -11.81381 -11.42491 -11.24551 -11.02020 -10.81617 -10.01588 -9.58262 -9.34079 -8.04825 -5.38762 0.30814 1.35974 1.40333 1.47408 1.76620 2.12900 2.47141 2.68249 3.26603 3.31442 3.39170 3.59476 3.78089 3.86246 3.91309 4.00664 4.09194 4.19895 4.21321 4.25763 4.42585 4.42960 4.60588 4.66815 4.72042 4.77611 4.83886 4.86770 4.90767 4.99746 5.01628 5.19673 5.21376 5.35499 5.40089 5.48552 5.71295 6.14622 6.19752 6.26871 6.98664 7.04388 7.79288 8.00070 9.16607 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.034678 B = 0.003643 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.230001 B = 7684.126347 C = 8052.028019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.063 4.063 3 Si 0.959 3.041 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.258 1.258 7 C -0.238 4.238 8 H 0.059 0.941 9 N -0.753 5.753 10 C 0.163 3.837 11 C 0.086 3.914 12 H 0.054 0.946 13 C 0.092 3.908 14 N -0.607 5.607 15 C 0.558 3.442 16 O -0.592 6.592 17 C -0.219 4.219 18 C -0.065 4.065 19 C -0.104 4.104 20 C -0.120 4.120 21 C -0.095 4.095 22 C 0.033 3.967 23 C 0.035 3.965 24 O -0.388 6.388 25 H 0.259 0.741 26 H 0.368 0.632 27 H 0.036 0.964 28 H 0.046 0.954 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.124 0.876 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.077 0.923 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.160 0.840 39 H 0.089 0.911 40 H 0.052 0.948 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.476 -4.362 -4.204 33.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.254 4.254 3 Si 0.786 3.214 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.183 1.183 7 C -0.369 4.369 8 H 0.077 0.923 9 N -0.399 5.399 10 C 0.036 3.964 11 C 0.027 3.973 12 H 0.072 0.928 13 C -0.032 4.032 14 N -0.339 5.339 15 C 0.351 3.649 16 O -0.474 6.474 17 C -0.222 4.222 18 C -0.084 4.084 19 C -0.141 4.141 20 C -0.157 4.157 21 C -0.131 4.131 22 C -0.087 4.087 23 C -0.042 4.042 24 O -0.307 6.307 25 H 0.068 0.932 26 H 0.201 0.799 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.142 0.858 32 H 0.112 0.888 33 H 0.120 0.880 34 H 0.096 0.904 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.107 0.893 38 H 0.176 0.824 39 H 0.107 0.893 40 H 0.070 0.930 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 31.956 -4.763 -3.880 32.542 hybrid contribution -0.563 0.671 0.542 1.030 sum 31.393 -4.092 -3.338 31.834 Atomic orbital electron populations 1.69879 1.07056 1.26825 1.59542 1.25506 0.96169 1.01326 1.02425 0.85343 0.78305 0.79488 0.78219 1.20157 1.21828 1.18322 1.19061 0.82455 0.93743 1.41642 0.92312 1.42535 1.02520 1.03880 1.90941 1.20747 0.87823 0.88355 0.99465 1.22552 0.94410 0.91889 0.88422 0.92764 1.22173 0.80293 0.96689 1.04045 1.48081 1.05991 1.48752 1.31076 1.18708 0.86925 0.78313 0.80976 1.90760 1.82959 1.42684 1.31001 1.21878 0.90414 1.08166 1.01726 1.24454 0.95553 0.90745 0.97695 1.21569 0.93402 1.03311 0.95817 1.22531 0.94377 1.03376 0.95413 1.21675 0.96485 1.00750 0.94216 1.23922 1.04757 0.90737 0.89311 1.23331 0.80622 0.96239 1.04029 1.88068 1.26977 1.73302 1.42382 0.93180 0.79925 0.94622 0.93596 0.89469 0.89203 0.85769 0.88813 0.87966 0.90406 0.88088 0.87586 0.89296 0.82367 0.89302 0.92953 0.84895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.61 13.97 21.65 0.30 -64.31 16 2 C -0.06 -3.84 5.50 84.86 0.47 -3.37 16 3 Si 0.96 47.35 27.74 68.60 1.90 49.25 16 4 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 5 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 6 H -0.26 -11.74 6.52 99.48 0.65 -11.09 16 7 C -0.24 -14.27 10.47 84.03 0.88 -13.39 16 8 H 0.06 3.81 8.06 -2.91 -0.02 3.78 16 9 N -0.75 -37.76 5.30 -343.45 -1.82 -39.58 16 10 C 0.16 6.65 5.96 86.38 0.51 7.16 16 11 C 0.09 2.86 2.88 30.84 0.09 2.95 16 12 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 13 C 0.09 2.65 5.96 86.50 0.52 3.16 16 14 N -0.61 -14.97 3.01 -820.78 -2.47 -17.44 16 15 C 0.56 15.01 7.67 86.57 0.66 15.67 16 16 O -0.59 -21.00 16.28 -4.09 -0.07 -21.06 16 17 C -0.22 -3.92 5.96 -18.58 -0.11 -4.03 16 18 C -0.06 -0.99 10.46 24.64 0.26 -0.74 16 19 C -0.10 -0.77 6.80 30.52 0.21 -0.56 16 20 C -0.12 -0.66 7.16 31.66 0.23 -0.43 16 21 C -0.10 -0.86 4.37 30.51 0.13 -0.73 16 22 C 0.03 0.56 5.39 86.35 0.47 1.02 16 23 C 0.03 0.71 6.98 72.08 0.50 1.22 16 24 O -0.39 -12.37 10.13 -148.98 -1.51 -13.88 16 25 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 26 H 0.37 17.87 5.41 -92.71 -0.50 17.36 16 27 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.09 2.83 7.06 -2.38 -0.02 2.81 16 31 H 0.12 2.19 8.05 -2.91 -0.02 2.17 16 32 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.08 0.42 8.14 -2.38 -0.02 0.40 16 35 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 36 H 0.11 0.61 6.71 -2.38 -0.02 0.59 16 37 H 0.09 0.72 6.85 -2.39 -0.02 0.71 16 38 H 0.16 1.65 2.49 -19.16 -0.05 1.61 16 39 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -80.12 325.23 1.58 -78.54 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 0.43 Total: 20.55 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 4.81 Total: 7.93 kcal Atomic # 7 Polarization: -117.34 SS G_CDS: -3.99 Total: -121.33 kcal Atomic # 8 Polarization: -33.37 SS G_CDS: -1.58 Total: -34.94 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 1.90 Total: 49.25 kcal Total: -80.12 1.58 -78.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273245005.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.176 kcal (2) G-P(sol) polarization free energy of solvation -80.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds