Wall clock time and date at job start Tue Mar 31 2020 02:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48503 * 109.47574 * 269.99934 * 3 2 1 5 5 H 1.48500 * 109.47346 * 30.00046 * 3 2 1 6 6 H 1.48499 * 109.47067 * 149.99696 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.46998 * 180.02562 * 10 9 7 12 12 C 1.46273 * 118.71441 * 269.73492 * 11 10 9 13 13 C 1.52720 * 109.47748 * 163.74472 * 12 11 10 14 14 C 1.53389 * 113.80018 * 176.74397 * 13 12 11 15 15 N 1.48069 * 86.02360 * 91.50801 * 14 13 12 16 16 C 1.46904 * 110.99543 * 137.23254 * 15 14 13 17 17 C 1.53005 * 117.49480 * 144.29910 * 16 15 14 18 18 C 1.52996 * 117.49818 * 75.64094 * 16 15 14 19 19 C 1.48065 * 90.84238 * 24.30890 * 15 14 13 20 20 O 1.42688 * 112.32919 * 45.61203 * 13 12 11 21 21 C 1.43047 * 112.95057 * 295.70911 * 20 13 12 22 22 C 1.33720 * 118.71689 * 89.99423 * 11 10 9 23 23 O 1.21278 * 118.37730 * 3.23494 * 22 11 10 24 24 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 26 26 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 27 27 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 28 28 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 29 29 H 1.08992 * 109.45456 * 283.94751 * 12 11 10 30 30 H 1.08996 * 109.45703 * 43.89783 * 12 11 10 31 31 H 1.08997 * 113.78552 * 205.78259 * 14 13 12 32 32 H 1.08996 * 113.78176 * 337.23324 * 14 13 12 33 33 H 1.08991 * 115.55095 * 289.96000 * 16 15 14 34 34 H 1.09000 * 117.49884 * 359.97438 * 17 16 15 35 35 H 1.08994 * 117.49729 * 145.02293 * 17 16 15 36 36 H 1.09003 * 117.49793 * 214.97883 * 18 16 15 37 37 H 1.09004 * 117.49819 * 359.96560 * 18 16 15 38 38 H 1.09001 * 113.78277 * 221.42344 * 19 15 14 39 39 H 1.09000 * 113.89049 * 89.98512 * 19 15 14 40 40 H 1.08999 * 109.34781 * 287.07010 * 21 20 13 41 41 H 1.08998 * 109.35237 * 167.51523 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5130 -4.9308 -0.0012 12 6 1.1663 -5.5428 1.2814 13 6 0.0881 -6.6025 1.0651 14 6 -0.2948 -7.3651 2.3397 15 7 -1.3391 -6.3311 2.5211 16 6 -2.6101 -6.9350 2.9427 17 6 -3.4752 -6.1453 3.9271 18 6 -2.7257 -7.3945 4.3975 19 6 -1.3423 -6.0483 1.0677 20 8 0.3749 -7.4484 -0.0476 21 6 0.3838 -6.7467 -1.2941 22 6 1.1921 -5.4869 -1.1742 23 8 1.5731 -4.9473 -2.1913 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5568 -0.8902 26 1 0.6248 -2.5571 0.8897 27 1 2.8721 -3.6043 -0.8905 28 1 2.8721 -3.6042 0.8895 29 1 2.0531 -6.0055 1.7143 30 1 0.7892 -4.7769 1.9590 31 1 -0.6919 -8.3628 2.1525 32 1 0.4768 -7.3502 3.1093 33 1 -3.1230 -7.5278 2.1854 34 1 -3.1009 -5.1780 4.2622 35 1 -4.5571 -6.2191 3.8178 36 1 -3.3149 -8.2895 4.5973 37 1 -1.8584 -7.2491 5.0416 38 1 -1.4030 -4.9871 0.8265 39 1 -2.0496 -6.6545 0.5016 40 1 -0.6391 -6.4943 -1.5737 41 1 0.8196 -7.3834 -2.0640 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274010067.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:04 Heat of formation + Delta-G solvation = -6.152128 kcal Electronic energy + Delta-G solvation = -22647.342520 eV Core-core repulsion = 19336.720012 eV Total energy + Delta-G solvation = -3310.622507 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.29672 -39.32810 -37.29998 -35.72550 -35.18752 -33.01609 -30.22301 -29.22495 -27.26348 -26.36524 -25.21353 -24.50780 -22.46175 -21.80802 -20.94382 -19.96666 -18.14220 -17.68841 -16.85448 -16.59388 -15.90935 -15.63287 -15.55108 -14.94835 -14.54245 -14.38608 -14.12784 -13.72963 -13.47198 -13.16973 -12.91685 -12.66700 -12.34641 -12.23375 -12.02884 -11.66368 -11.53565 -11.31281 -10.97458 -10.89304 -10.69601 -10.55678 -10.29971 -10.14116 -9.89302 -9.85758 -9.31334 -9.08278 -8.97883 -8.34963 -8.09685 -6.00389 -4.03290 2.87950 3.14368 3.33572 3.38298 3.40138 3.43507 3.57447 3.66762 4.23125 4.34269 4.47302 4.65019 4.71955 4.74705 4.80523 5.04309 5.16939 5.20608 5.28419 5.36051 5.45357 5.45801 5.51360 5.53945 5.68577 5.75196 5.78226 5.81808 5.98623 6.02748 6.09979 6.53892 6.68861 6.80908 6.85462 6.88905 7.59891 7.70298 7.93187 7.99251 8.35447 8.52107 9.02858 9.60550 11.11142 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.016129 B = 0.004915 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.554564 B = 5695.755174 C = 6937.580675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.057 0.943 9 C 0.016 3.984 10 C 0.112 3.888 11 N -0.596 5.596 12 C 0.117 3.883 13 C 0.067 3.933 14 C 0.032 3.968 15 N -0.443 5.443 16 C -0.030 4.030 17 C -0.159 4.159 18 C -0.169 4.169 19 C -0.013 4.013 20 O -0.361 6.361 21 C 0.052 3.948 22 C 0.480 3.520 23 O -0.541 6.541 24 H 0.261 0.739 25 H 0.020 0.980 26 H 0.016 0.984 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.884 -17.993 7.093 19.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.075 0.925 9 C -0.022 4.022 10 C -0.009 4.009 11 N -0.329 5.329 12 C -0.007 4.007 13 C 0.026 3.974 14 C -0.097 4.097 15 N -0.166 5.166 16 C -0.140 4.140 17 C -0.196 4.196 18 C -0.207 4.207 19 C -0.141 4.141 20 O -0.279 6.279 21 C -0.028 4.028 22 C 0.267 3.733 23 O -0.420 6.420 24 H 0.070 0.930 25 H 0.038 0.962 26 H 0.035 0.965 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.119 0.881 31 H 0.103 0.897 32 H 0.120 0.880 33 H 0.111 0.889 34 H 0.122 0.878 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.118 0.882 38 H 0.122 0.878 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.707 -17.272 7.061 19.244 hybrid contribution -0.008 0.533 -0.553 0.768 sum -4.715 -16.739 6.508 18.568 Atomic orbital electron populations 1.69972 1.06089 1.26637 1.50537 1.24986 0.94839 0.99255 0.95129 0.86559 0.79784 0.83283 0.78165 1.20610 1.21228 1.19808 1.21082 0.93044 0.90679 1.51094 0.92511 1.19346 0.94333 0.90995 0.97536 1.21961 0.95713 0.81417 1.01772 1.47699 1.56274 1.24145 1.04762 1.21687 0.96764 0.95283 0.86972 1.23427 0.94055 0.91846 0.88063 1.23933 0.95594 0.95689 0.94458 1.68431 1.03972 1.28054 1.16186 1.23061 0.94542 1.03003 0.93365 1.23022 0.97625 0.96883 1.02089 1.23008 1.03261 0.98637 0.95778 1.24574 0.95930 1.04028 0.89612 1.88062 1.91875 1.33729 1.14237 1.22751 1.00578 0.92115 0.87311 1.20618 0.81691 0.86956 0.84054 1.90748 1.53471 1.63297 1.34449 0.92986 0.96182 0.96530 0.90469 0.91699 0.90793 0.88140 0.89667 0.87975 0.88932 0.87790 0.88758 0.88770 0.88208 0.87772 0.90065 0.89647 0.85602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.16 13.29 55.43 0.74 -26.42 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.91 9.11 -34.44 -0.31 -15.23 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 9 C 0.02 0.42 5.29 -27.88 -0.15 0.27 16 10 C 0.11 2.42 5.26 -4.04 -0.02 2.40 16 11 N -0.60 -10.97 2.83 -174.57 -0.49 -11.47 16 12 C 0.12 1.70 5.77 -4.31 -0.02 1.67 16 13 C 0.07 0.84 1.21 -90.43 -0.11 0.73 16 14 C 0.03 0.32 7.33 -2.98 -0.02 0.30 16 15 N -0.44 -5.15 6.31 -232.90 -1.47 -6.62 16 16 C -0.03 -0.30 4.93 -67.71 -0.33 -0.64 16 17 C -0.16 -1.51 10.46 -26.69 -0.28 -1.78 16 18 C -0.17 -1.42 10.38 -26.69 -0.28 -1.69 16 19 C -0.01 -0.16 6.70 -2.98 -0.02 -0.18 16 20 O -0.36 -4.73 10.66 -35.23 -0.38 -5.11 16 21 C 0.05 0.71 6.67 35.75 0.24 0.95 16 22 C 0.48 8.97 7.57 -11.72 -0.09 8.88 16 23 O -0.54 -12.37 16.28 5.56 0.09 -12.28 16 24 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.08 1.79 7.19 -51.93 -0.37 1.42 16 28 H 0.06 1.28 8.04 -51.93 -0.42 0.87 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.10 1.56 7.99 -51.93 -0.41 1.14 16 31 H 0.09 0.78 7.92 -51.93 -0.41 0.37 16 32 H 0.10 0.92 8.09 -51.93 -0.42 0.50 16 33 H 0.09 0.86 7.75 -51.93 -0.40 0.46 16 34 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.10 1.59 8.10 -51.93 -0.42 1.17 16 39 H 0.08 0.92 7.67 -51.93 -0.40 0.52 16 40 H 0.09 1.07 7.92 -51.93 -0.41 0.66 16 41 H 0.13 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 338.22 15.07 5.10 5.10 Total: -1.00 -33.25 338.22 -9.53 -42.77 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -6.59 Total: -0.18 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -1.50 Total: -2.69 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: -1.23 Total: -44.51 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.28 Total: -17.39 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.25 -9.53 -42.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274010067.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.621 kcal (2) G-P(sol) polarization free energy of solvation -33.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds