Wall clock time and date at job start Tue Mar 31 2020 02:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48503 * 109.47574 * 269.99934 * 3 2 1 5 5 H 1.48500 * 109.47346 * 30.00046 * 3 2 1 6 6 H 1.48499 * 109.47067 * 149.99696 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.46998 * 180.02562 * 10 9 7 12 12 C 1.46273 * 118.71441 * 269.73492 * 11 10 9 13 13 C 1.52720 * 109.47748 * 163.74472 * 12 11 10 14 14 C 1.53389 * 113.80018 * 176.74397 * 13 12 11 15 15 N 1.48069 * 86.02360 * 91.50801 * 14 13 12 16 16 C 1.46904 * 110.99543 * 137.23254 * 15 14 13 17 17 C 1.53005 * 117.49480 * 144.29910 * 16 15 14 18 18 C 1.52996 * 117.49818 * 75.64094 * 16 15 14 19 19 C 1.48065 * 90.84238 * 24.30890 * 15 14 13 20 20 O 1.42688 * 112.32919 * 45.61203 * 13 12 11 21 21 C 1.43047 * 112.95057 * 295.70911 * 20 13 12 22 22 C 1.33720 * 118.71689 * 89.99423 * 11 10 9 23 23 O 1.21278 * 118.37730 * 3.23494 * 22 11 10 24 24 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 26 26 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 27 27 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 28 28 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 29 29 H 1.08992 * 109.45456 * 283.94751 * 12 11 10 30 30 H 1.08996 * 109.45703 * 43.89783 * 12 11 10 31 31 H 1.08997 * 113.78552 * 205.78259 * 14 13 12 32 32 H 1.08996 * 113.78176 * 337.23324 * 14 13 12 33 33 H 1.08991 * 115.55095 * 289.96000 * 16 15 14 34 34 H 1.09000 * 117.49884 * 359.97438 * 17 16 15 35 35 H 1.08994 * 117.49729 * 145.02293 * 17 16 15 36 36 H 1.09003 * 117.49793 * 214.97883 * 18 16 15 37 37 H 1.09004 * 117.49819 * 359.96560 * 18 16 15 38 38 H 1.09001 * 113.78277 * 221.42344 * 19 15 14 39 39 H 1.09000 * 113.89049 * 89.98512 * 19 15 14 40 40 H 1.08999 * 109.34781 * 287.07010 * 21 20 13 41 41 H 1.08998 * 109.35237 * 167.51523 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5130 -4.9308 -0.0012 12 6 1.1663 -5.5428 1.2814 13 6 0.0881 -6.6025 1.0651 14 6 -0.2948 -7.3651 2.3397 15 7 -1.3391 -6.3311 2.5211 16 6 -2.6101 -6.9350 2.9427 17 6 -3.4752 -6.1453 3.9271 18 6 -2.7257 -7.3945 4.3975 19 6 -1.3423 -6.0483 1.0677 20 8 0.3749 -7.4484 -0.0476 21 6 0.3838 -6.7467 -1.2941 22 6 1.1921 -5.4869 -1.1742 23 8 1.5731 -4.9473 -2.1913 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5568 -0.8902 26 1 0.6248 -2.5571 0.8897 27 1 2.8721 -3.6043 -0.8905 28 1 2.8721 -3.6042 0.8895 29 1 2.0531 -6.0055 1.7143 30 1 0.7892 -4.7769 1.9590 31 1 -0.6919 -8.3628 2.1525 32 1 0.4768 -7.3502 3.1093 33 1 -3.1230 -7.5278 2.1854 34 1 -3.1009 -5.1780 4.2622 35 1 -4.5571 -6.2191 3.8178 36 1 -3.3149 -8.2895 4.5973 37 1 -1.8584 -7.2491 5.0416 38 1 -1.4030 -4.9871 0.8265 39 1 -2.0496 -6.6545 0.5016 40 1 -0.6391 -6.4943 -1.5737 41 1 0.8196 -7.3834 -2.0640 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274010067.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:03 Heat of formation + Delta-G solvation = -30.783395 kcal Electronic energy + Delta-G solvation = -22648.410612 eV Core-core repulsion = 19336.720012 eV Total energy + Delta-G solvation = -3311.690599 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.40991 -40.61253 -38.35756 -37.06374 -36.36241 -35.10825 -32.11464 -30.39729 -28.71995 -27.30292 -26.47280 -26.22369 -23.51302 -23.14573 -22.05442 -21.19470 -19.39044 -18.86878 -18.70997 -17.80447 -17.35610 -16.96486 -16.57024 -16.48674 -16.03676 -15.57410 -15.33397 -14.85658 -14.80910 -14.49329 -14.30235 -14.23039 -13.90874 -13.55368 -13.20571 -13.05040 -12.87269 -12.67924 -12.57164 -12.34561 -12.05952 -11.91908 -11.83111 -11.46535 -11.39207 -11.18717 -11.02140 -10.60824 -10.47270 -9.91945 -9.70757 -8.24392 -6.36975 1.38010 1.40752 1.43586 1.51850 1.82065 2.33206 2.40520 2.75285 2.81216 3.09334 3.18746 3.24832 3.57239 3.78001 4.01805 4.02784 4.12003 4.19751 4.23451 4.30957 4.41396 4.45814 4.50834 4.54226 4.67330 4.70642 4.75153 4.81934 4.86278 4.88704 5.05630 5.12973 5.17536 5.32037 5.41848 5.52806 5.70209 5.79049 5.99302 6.14205 6.39823 6.77532 7.02326 7.32666 8.87882 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.016129 B = 0.004915 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.554564 B = 5695.755174 C = 6937.580675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.970 3.030 4 H -0.276 1.276 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.031 3.969 10 C 0.126 3.874 11 N -0.599 5.599 12 C 0.113 3.887 13 C 0.065 3.935 14 C 0.048 3.952 15 N -0.460 5.460 16 C -0.042 4.042 17 C -0.172 4.172 18 C -0.149 4.149 19 C -0.012 4.012 20 O -0.352 6.352 21 C 0.063 3.937 22 C 0.470 3.530 23 O -0.593 6.593 24 H 0.264 0.736 25 H -0.026 1.026 26 H -0.002 1.002 27 H 0.058 0.942 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.119 0.881 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.490 -19.661 8.345 21.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.793 3.207 4 H -0.202 1.202 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.584 4.584 8 H 0.083 0.917 9 C -0.007 4.007 10 C 0.004 3.996 11 N -0.330 5.330 12 C -0.009 4.009 13 C 0.024 3.976 14 C -0.080 4.080 15 N -0.184 5.184 16 C -0.151 4.151 17 C -0.209 4.209 18 C -0.186 4.186 19 C -0.141 4.141 20 O -0.269 6.269 21 C -0.015 4.015 22 C 0.259 3.741 23 O -0.474 6.474 24 H 0.073 0.927 25 H -0.007 1.007 26 H 0.016 0.984 27 H 0.077 0.923 28 H 0.106 0.894 29 H 0.118 0.882 30 H 0.105 0.895 31 H 0.122 0.878 32 H 0.137 0.863 33 H 0.121 0.879 34 H 0.102 0.898 35 H 0.125 0.875 36 H 0.134 0.866 37 H 0.117 0.883 38 H 0.085 0.915 39 H 0.115 0.885 40 H 0.119 0.881 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.316 -18.980 8.351 21.180 hybrid contribution -0.191 1.059 -0.911 1.410 sum -4.506 -17.920 7.440 19.920 Atomic orbital electron populations 1.70114 1.07961 1.27887 1.51233 1.25995 0.95765 1.03502 0.94325 0.85381 0.78838 0.78024 0.78413 1.20155 1.20444 1.18150 1.21538 0.93710 0.91849 1.51257 0.91682 1.19112 0.94364 0.92946 0.94319 1.21513 0.94560 0.81623 1.01861 1.47748 1.55712 1.23035 1.06526 1.21914 0.98631 0.95505 0.84867 1.23473 0.92981 0.91887 0.89231 1.23982 0.95241 0.95775 0.93013 1.68398 1.05416 1.29430 1.15161 1.23165 0.93960 1.03517 0.94480 1.23051 0.98453 0.96667 1.02768 1.23073 1.02859 0.98542 0.94169 1.24480 0.96626 1.02016 0.90984 1.88089 1.91740 1.33168 1.13914 1.22750 1.00395 0.90005 0.88399 1.21637 0.81156 0.88176 0.83159 1.90715 1.55500 1.65136 1.36087 0.92712 1.00722 0.98381 0.92322 0.89442 0.88224 0.89508 0.87759 0.86326 0.87875 0.89814 0.87508 0.86557 0.88349 0.91539 0.88465 0.88120 0.83090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.32 13.29 21.45 0.28 -58.04 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.97 45.24 29.54 68.60 2.03 47.26 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 7 C -0.55 -32.05 9.11 25.60 0.23 -31.82 16 8 H 0.06 3.63 7.74 -2.91 -0.02 3.60 16 9 C 0.03 1.70 5.29 29.85 0.16 1.86 16 10 C 0.13 5.65 5.26 86.38 0.45 6.10 16 11 N -0.60 -22.41 2.83 -825.21 -2.34 -24.75 16 12 C 0.11 3.22 5.77 86.33 0.50 3.72 16 13 C 0.07 1.53 1.21 -10.60 -0.01 1.52 16 14 C 0.05 0.83 7.33 86.20 0.63 1.47 16 15 N -0.46 -10.11 6.31 -895.02 -5.65 -15.76 16 16 C -0.04 -0.76 4.93 44.91 0.22 -0.54 16 17 C -0.17 -3.08 10.46 30.62 0.32 -2.76 16 18 C -0.15 -2.11 10.38 30.62 0.32 -1.79 16 19 C -0.01 -0.30 6.70 86.21 0.58 0.28 16 20 O -0.35 -8.31 10.66 -148.98 -1.59 -9.90 16 21 C 0.06 1.66 6.67 71.07 0.47 2.13 16 22 C 0.47 17.81 7.57 87.65 0.66 18.47 16 23 O -0.59 -28.09 16.28 -3.02 -0.05 -28.14 16 24 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 25 H -0.03 -1.64 8.14 -2.39 -0.02 -1.66 16 26 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 27 H 0.06 2.83 7.19 -2.39 -0.02 2.82 16 28 H 0.09 3.47 8.04 -2.39 -0.02 3.45 16 29 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.09 2.73 7.99 -2.39 -0.02 2.71 16 31 H 0.10 1.48 7.92 -2.39 -0.02 1.46 16 32 H 0.12 1.71 8.09 -2.39 -0.02 1.69 16 33 H 0.10 1.64 7.75 -2.39 -0.02 1.63 16 34 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.07 2.15 8.10 -2.39 -0.02 2.13 16 39 H 0.10 2.06 7.67 -2.39 -0.02 2.04 16 40 H 0.10 2.38 7.92 -2.39 -0.02 2.36 16 41 H 0.15 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -74.96 338.22 -1.31 -76.26 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 1.00 Total: 13.84 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: 5.00 Total: -0.78 kcal Atomic # 7 Polarization: -90.85 SS G_CDS: -7.70 Total: -98.55 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: -1.64 Total: -38.05 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -74.96 -1.31 -76.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274010067.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.481 kcal (2) G-P(sol) polarization free energy of solvation -74.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds