Wall clock time and date at job start Tue Mar 31 2020 02:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99705 * 2 1 4 4 H 1.48500 * 109.46998 * 269.99756 * 3 2 1 5 5 H 1.48503 * 109.47152 * 29.99289 * 3 2 1 6 6 H 1.48494 * 109.47220 * 149.99630 * 3 2 1 7 7 C 1.37878 * 120.00463 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99746 * 180.02562 * 7 2 1 9 9 C 1.50692 * 119.99655 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47189 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47350 * 180.02562 * 10 9 7 12 12 C 1.34316 * 119.40406 * 269.97535 * 11 10 9 13 13 O 1.21280 * 118.99084 * 2.04884 * 12 11 10 14 14 C 1.50274 * 122.00939 * 182.01567 * 12 11 10 15 15 O 1.42822 * 110.53590 * 341.44510 * 14 12 11 16 16 C 1.43395 * 113.34980 * 51.37668 * 15 14 12 17 17 C 1.45812 * 119.40777 * 90.00089 * 11 10 9 18 18 C 1.52968 * 114.28931 * 31.74703 * 17 11 10 19 19 N 1.47572 * 87.80828 * 271.70860 * 18 17 11 20 20 C 1.46908 * 111.00017 * 221.69525 * 19 18 17 21 21 C 1.53000 * 117.49864 * 174.99822 * 20 19 18 22 22 C 1.53002 * 60.02940 * 107.47917 * 21 20 19 23 23 C 1.47572 * 87.94853 * 333.43006 * 19 18 17 24 24 H 0.97001 * 120.00328 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47684 * 60.00003 * 9 7 2 26 26 H 1.09001 * 109.47597 * 299.99617 * 9 7 2 27 27 H 1.09004 * 109.46917 * 59.99516 * 10 9 7 28 28 H 1.08995 * 109.47218 * 300.00204 * 10 9 7 29 29 H 1.09001 * 109.26646 * 221.16858 * 14 12 11 30 30 H 1.09002 * 109.26288 * 101.71655 * 14 12 11 31 31 H 1.09002 * 109.70532 * 174.88371 * 16 15 14 32 32 H 1.09000 * 109.74262 * 54.28584 * 16 15 14 33 33 H 1.08997 * 113.50000 * 156.97042 * 18 17 11 34 34 H 1.09003 * 113.49606 * 26.43676 * 18 17 11 35 35 H 1.08999 * 115.54788 * 29.33052 * 20 19 18 36 36 H 1.09002 * 117.49833 * 214.98022 * 21 20 19 37 37 H 1.09002 * 117.49953 * 359.97438 * 21 20 19 38 38 H 1.09000 * 117.49996 * 107.50493 * 22 21 20 39 39 H 1.08999 * 117.49664 * 252.51862 * 22 21 20 40 40 H 1.08999 * 113.49925 * 141.29588 * 23 19 18 41 41 H 1.08997 * 113.49679 * 271.83919 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5465 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4990 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5130 -4.9308 -0.0001 12 6 1.1833 -5.5025 1.1698 13 8 1.4680 -4.9341 2.2026 14 6 0.4720 -6.8244 1.2378 15 8 -0.1483 -7.1246 -0.0132 16 6 0.7434 -7.0138 -1.1307 17 6 1.1555 -5.5505 -1.2706 18 6 2.1532 -5.2900 -2.4005 19 7 1.3935 -4.0638 -2.7122 20 6 1.2433 -3.8922 -4.1635 21 6 0.3777 -2.7287 -4.6514 22 6 1.8990 -2.6650 -4.8016 23 6 0.2044 -4.7164 -2.1310 24 1 -0.4851 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6242 -2.5567 0.8903 27 1 2.8722 -3.6042 0.8905 28 1 2.8721 -3.6042 -0.8894 29 1 -0.2899 -6.7832 2.0163 30 1 1.1906 -7.6074 1.4799 31 1 0.2372 -7.3415 -2.0387 32 1 1.6264 -7.6295 -0.9597 33 1 2.1168 -6.0371 -3.1933 34 1 3.1666 -5.0957 -2.0493 35 1 1.2235 -4.8131 -4.7462 36 1 -0.2112 -2.8841 -5.5553 37 1 -0.0806 -2.0908 -3.8956 38 1 2.3109 -2.7784 -5.8043 39 1 2.4416 -1.9855 -4.1444 40 1 -0.4239 -4.0391 -1.5525 41 1 -0.3622 -5.3075 -2.8504 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274010109.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:06 Heat of formation + Delta-G solvation = 5.212210 kcal Electronic energy + Delta-G solvation = -23531.295128 eV Core-core repulsion = 20221.165416 eV Total energy + Delta-G solvation = -3310.129713 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.36662 -39.04012 -37.41190 -36.18160 -34.09996 -32.69791 -30.16334 -29.46817 -27.15503 -26.11309 -25.16771 -24.04402 -22.03201 -21.25399 -20.86149 -20.37837 -18.09464 -17.44561 -16.69302 -16.37024 -15.92275 -15.68091 -15.19955 -14.79360 -14.45245 -14.30732 -14.12458 -13.57675 -13.51585 -12.78647 -12.66759 -12.38576 -12.27092 -12.08114 -11.80631 -11.22149 -11.18278 -11.11735 -10.84403 -10.83179 -10.56111 -10.35451 -10.17586 -9.86946 -9.70998 -9.58539 -9.20105 -8.87480 -8.57611 -8.19109 -8.01510 -5.87199 -3.86946 2.86305 3.17634 3.38496 3.44664 3.48703 3.62715 3.92147 3.99851 4.42764 4.54570 4.56734 4.63560 4.88163 5.08193 5.10836 5.15627 5.24807 5.30791 5.34566 5.41347 5.49523 5.52167 5.61594 5.83311 5.84799 5.88461 6.13497 6.27740 6.32869 6.45921 6.53569 6.66396 6.71901 6.95576 7.11957 7.27951 7.77982 7.86019 8.11953 8.19133 8.47229 8.59686 9.18933 9.74141 11.24478 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.013957 B = 0.007513 C = 0.005374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.722472 B = 3725.823375 C = 5209.468450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.505 4.505 8 H 0.051 0.949 9 C 0.020 3.980 10 C 0.120 3.880 11 N -0.569 5.569 12 C 0.481 3.519 13 O -0.533 6.533 14 C 0.049 3.951 15 O -0.368 6.368 16 C 0.067 3.933 17 C 0.107 3.893 18 C -0.003 4.003 19 N -0.413 5.413 20 C -0.035 4.035 21 C -0.166 4.166 22 C -0.159 4.159 23 C -0.001 4.001 24 H 0.257 0.743 25 H 0.036 0.964 26 H 0.009 0.991 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.127 0.873 30 H 0.083 0.917 31 H 0.112 0.888 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.102 0.898 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.345 -15.733 -9.017 18.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.142 4.142 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.545 4.545 8 H 0.069 0.931 9 C -0.018 4.018 10 C 0.000 4.000 11 N -0.301 5.301 12 C 0.267 3.733 13 O -0.410 6.410 14 C -0.031 4.031 15 O -0.286 6.286 16 C -0.011 4.011 17 C 0.018 3.982 18 C -0.133 4.133 19 N -0.135 5.135 20 C -0.145 4.145 21 C -0.204 4.204 22 C -0.196 4.196 23 C -0.130 4.130 24 H 0.067 0.933 25 H 0.054 0.946 26 H 0.028 0.972 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.145 0.855 30 H 0.101 0.899 31 H 0.130 0.870 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.125 0.875 38 H 0.106 0.894 39 H 0.125 0.875 40 H 0.120 0.880 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.391 -14.677 -8.256 16.897 hybrid contribution 0.400 0.403 -0.533 0.779 sum 1.791 -14.273 -8.789 16.858 Atomic orbital electron populations 1.69971 1.05929 1.26158 1.51425 1.24924 0.94751 0.98841 0.95671 0.86665 0.79910 0.83927 0.77880 1.20843 1.21409 1.20014 1.21056 0.92732 0.90884 1.49780 0.93062 1.19363 0.94351 0.90420 0.97665 1.21958 0.95714 0.81193 1.01139 1.47444 1.55575 1.24031 1.03009 1.20937 0.80417 0.87900 0.84011 1.90759 1.54328 1.63376 1.32556 1.22796 0.99036 0.93542 0.87719 1.88140 1.36409 1.89625 1.14398 1.22883 0.94547 0.92817 0.90855 1.21733 0.97263 0.93375 0.85783 1.24172 1.00117 0.92991 0.96048 1.69139 1.07374 1.28393 1.08589 1.23084 1.07812 0.93112 0.90448 1.22984 0.93886 1.00949 1.02543 1.22980 0.95738 1.00147 1.00782 1.24269 0.95016 0.97031 0.96698 0.93309 0.94617 0.97224 0.91798 0.90557 0.85474 0.89899 0.86966 0.91678 0.90433 0.88818 0.89572 0.89256 0.87518 0.89370 0.87518 0.87971 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.58 13.29 55.43 0.74 -26.85 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.89 22.39 29.54 -169.99 -5.02 17.37 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.51 -14.72 9.11 -34.44 -0.31 -15.03 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.53 5.02 -27.89 -0.14 0.39 16 10 C 0.12 2.64 4.49 -4.04 -0.02 2.62 16 11 N -0.57 -10.43 2.69 -160.34 -0.43 -10.87 16 12 C 0.48 8.94 7.64 -11.40 -0.09 8.86 16 13 O -0.53 -12.25 16.49 5.56 0.09 -12.16 16 14 C 0.05 0.65 6.93 35.80 0.25 0.90 16 15 O -0.37 -4.78 10.84 -35.23 -0.38 -5.16 16 16 C 0.07 0.71 6.14 36.99 0.23 0.94 16 17 C 0.11 1.51 1.67 -132.97 -0.22 1.28 16 18 C 0.00 -0.04 6.31 -7.30 -0.05 -0.09 16 19 N -0.41 -6.48 4.53 -236.49 -1.07 -7.55 16 20 C -0.04 -0.47 4.90 -67.67 -0.33 -0.81 16 21 C -0.17 -2.35 10.43 -26.73 -0.28 -2.63 16 22 C -0.16 -2.20 10.46 -26.69 -0.28 -2.48 16 23 C 0.00 -0.01 6.25 -7.28 -0.05 -0.05 16 24 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.04 0.98 5.34 -51.93 -0.28 0.70 16 26 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 1.52 7.36 -51.93 -0.38 1.14 16 28 H 0.08 1.59 5.57 -51.93 -0.29 1.30 16 29 H 0.13 1.57 8.14 -51.93 -0.42 1.15 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.11 0.90 7.84 -51.93 -0.41 0.49 16 32 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 33 H 0.08 0.72 7.60 -51.93 -0.39 0.33 16 34 H 0.09 1.26 7.04 -51.93 -0.37 0.89 16 35 H 0.09 0.95 7.73 -51.93 -0.40 0.55 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.11 1.86 8.14 -51.93 -0.42 1.44 16 38 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.11 1.76 8.14 -51.93 -0.42 1.34 16 40 H 0.10 1.96 6.82 -51.93 -0.35 1.61 16 41 H 0.07 0.89 7.66 -51.93 -0.40 0.50 16 LS Contribution 327.62 15.07 4.94 4.94 Total: -1.00 -34.52 327.62 -8.71 -43.24 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -6.19 Total: 1.51 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -1.38 Total: -4.47 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: -0.76 Total: -45.26 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.29 Total: -17.32 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.52 -8.71 -43.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274010109.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.451 kcal (2) G-P(sol) polarization free energy of solvation -34.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds