Wall clock time and date at job start Tue Mar 31 2020 02:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99705 * 2 1 4 4 H 1.48500 * 109.46998 * 269.99756 * 3 2 1 5 5 H 1.48503 * 109.47152 * 29.99289 * 3 2 1 6 6 H 1.48494 * 109.47220 * 149.99630 * 3 2 1 7 7 C 1.37878 * 120.00463 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99746 * 180.02562 * 7 2 1 9 9 C 1.50692 * 119.99655 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47189 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47350 * 180.02562 * 10 9 7 12 12 C 1.34316 * 119.40406 * 269.97535 * 11 10 9 13 13 O 1.21280 * 118.99084 * 2.04884 * 12 11 10 14 14 C 1.50274 * 122.00939 * 182.01567 * 12 11 10 15 15 O 1.42822 * 110.53590 * 341.44510 * 14 12 11 16 16 C 1.43395 * 113.34980 * 51.37668 * 15 14 12 17 17 C 1.45812 * 119.40777 * 90.00089 * 11 10 9 18 18 C 1.52968 * 114.28931 * 31.74703 * 17 11 10 19 19 N 1.47572 * 87.80828 * 271.70860 * 18 17 11 20 20 C 1.46908 * 111.00017 * 221.69525 * 19 18 17 21 21 C 1.53000 * 117.49864 * 174.99822 * 20 19 18 22 22 C 1.53002 * 60.02940 * 107.47917 * 21 20 19 23 23 C 1.47572 * 87.94853 * 333.43006 * 19 18 17 24 24 H 0.97001 * 120.00328 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47684 * 60.00003 * 9 7 2 26 26 H 1.09001 * 109.47597 * 299.99617 * 9 7 2 27 27 H 1.09004 * 109.46917 * 59.99516 * 10 9 7 28 28 H 1.08995 * 109.47218 * 300.00204 * 10 9 7 29 29 H 1.09001 * 109.26646 * 221.16858 * 14 12 11 30 30 H 1.09002 * 109.26288 * 101.71655 * 14 12 11 31 31 H 1.09002 * 109.70532 * 174.88371 * 16 15 14 32 32 H 1.09000 * 109.74262 * 54.28584 * 16 15 14 33 33 H 1.08997 * 113.50000 * 156.97042 * 18 17 11 34 34 H 1.09003 * 113.49606 * 26.43676 * 18 17 11 35 35 H 1.08999 * 115.54788 * 29.33052 * 20 19 18 36 36 H 1.09002 * 117.49833 * 214.98022 * 21 20 19 37 37 H 1.09002 * 117.49953 * 359.97438 * 21 20 19 38 38 H 1.09000 * 117.49996 * 107.50493 * 22 21 20 39 39 H 1.08999 * 117.49664 * 252.51862 * 22 21 20 40 40 H 1.08999 * 113.49925 * 141.29588 * 23 19 18 41 41 H 1.08997 * 113.49679 * 271.83919 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5465 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4990 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5130 -4.9308 -0.0001 12 6 1.1833 -5.5025 1.1698 13 8 1.4680 -4.9341 2.2026 14 6 0.4720 -6.8244 1.2378 15 8 -0.1483 -7.1246 -0.0132 16 6 0.7434 -7.0138 -1.1307 17 6 1.1555 -5.5505 -1.2706 18 6 2.1532 -5.2900 -2.4005 19 7 1.3935 -4.0638 -2.7122 20 6 1.2433 -3.8922 -4.1635 21 6 0.3777 -2.7287 -4.6514 22 6 1.8990 -2.6650 -4.8016 23 6 0.2044 -4.7164 -2.1310 24 1 -0.4851 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6242 -2.5567 0.8903 27 1 2.8722 -3.6042 0.8905 28 1 2.8721 -3.6042 -0.8894 29 1 -0.2899 -6.7832 2.0163 30 1 1.1906 -7.6074 1.4799 31 1 0.2372 -7.3415 -2.0387 32 1 1.6264 -7.6295 -0.9597 33 1 2.1168 -6.0371 -3.1933 34 1 3.1666 -5.0957 -2.0493 35 1 1.2235 -4.8131 -4.7462 36 1 -0.2112 -2.8841 -5.5553 37 1 -0.0806 -2.0908 -3.8956 38 1 2.3109 -2.7784 -5.8043 39 1 2.4416 -1.9855 -4.1444 40 1 -0.4239 -4.0391 -1.5525 41 1 -0.3622 -5.3075 -2.8504 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274010109.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:05 Heat of formation + Delta-G solvation = -21.202286 kcal Electronic energy + Delta-G solvation = -23532.440547 eV Core-core repulsion = 20221.165416 eV Total energy + Delta-G solvation = -3311.275131 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.57066 -40.34106 -38.59638 -37.36496 -35.84276 -34.68128 -31.93968 -30.67885 -28.62934 -27.21827 -26.58805 -25.64489 -23.16281 -22.91311 -22.41281 -21.46645 -19.38927 -18.80809 -18.37969 -17.73091 -17.29629 -16.93311 -16.58063 -16.32140 -15.92198 -15.65500 -15.36596 -14.98171 -14.67809 -14.42417 -14.28320 -13.87655 -13.71523 -13.36348 -13.18930 -12.93811 -12.80107 -12.63506 -12.35821 -12.23814 -12.08334 -11.75933 -11.68550 -11.36731 -11.30690 -11.21843 -10.94153 -10.51659 -10.35719 -9.67412 -9.57811 -8.18661 -6.28060 1.33869 1.36912 1.42802 1.47697 1.86284 2.40017 2.64693 2.85548 2.95203 3.14670 3.27749 3.48084 3.58384 3.87747 4.05734 4.08722 4.14361 4.30396 4.37685 4.40370 4.44945 4.54665 4.55580 4.66709 4.72057 4.81182 4.84112 4.86867 4.88436 5.08359 5.11980 5.26881 5.35741 5.36870 5.53020 5.72541 5.79706 5.94705 6.24290 6.25350 6.51211 6.86238 7.07500 7.38452 8.93399 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.013957 B = 0.007513 C = 0.005374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.722472 B = 3725.823375 C = 5209.468450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.530 4.530 8 H 0.054 0.946 9 C 0.039 3.961 10 C 0.142 3.858 11 N -0.574 5.574 12 C 0.467 3.533 13 O -0.592 6.592 14 C 0.063 3.937 15 O -0.375 6.375 16 C 0.070 3.930 17 C 0.097 3.903 18 C 0.012 3.988 19 N -0.466 5.466 20 C -0.022 4.022 21 C -0.177 4.177 22 C -0.162 4.162 23 C 0.004 3.996 24 H 0.260 0.740 25 H 0.024 0.976 26 H -0.047 1.047 27 H 0.038 0.962 28 H 0.090 0.910 29 H 0.134 0.866 30 H 0.123 0.877 31 H 0.152 0.848 32 H 0.096 0.904 33 H 0.129 0.871 34 H 0.083 0.917 35 H 0.130 0.870 36 H 0.120 0.880 37 H 0.057 0.943 38 H 0.122 0.878 39 H 0.068 0.932 40 H 0.043 0.957 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.324 -18.391 -11.535 21.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.195 4.195 3 Si 0.786 3.214 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.568 4.568 8 H 0.072 0.928 9 C 0.001 3.999 10 C 0.020 3.980 11 N -0.304 5.304 12 C 0.256 3.744 13 O -0.473 6.473 14 C -0.016 4.016 15 O -0.293 6.293 16 C -0.007 4.007 17 C 0.010 3.990 18 C -0.117 4.117 19 N -0.188 5.188 20 C -0.131 4.131 21 C -0.214 4.214 22 C -0.200 4.200 23 C -0.126 4.126 24 H 0.069 0.931 25 H 0.042 0.958 26 H -0.028 1.028 27 H 0.056 0.944 28 H 0.108 0.892 29 H 0.152 0.848 30 H 0.141 0.859 31 H 0.170 0.830 32 H 0.114 0.886 33 H 0.147 0.853 34 H 0.101 0.899 35 H 0.148 0.852 36 H 0.138 0.862 37 H 0.075 0.925 38 H 0.140 0.860 39 H 0.086 0.914 40 H 0.062 0.938 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.367 -17.373 -10.812 20.599 hybrid contribution 0.046 1.271 0.223 1.291 sum 2.412 -16.102 -10.589 19.422 Atomic orbital electron populations 1.70124 1.07760 1.27323 1.52055 1.25891 0.95697 1.03040 0.94901 0.85502 0.78607 0.78682 0.78577 1.19363 1.20853 1.19036 1.21468 0.93084 0.92275 1.50002 0.92791 1.19094 0.94302 0.92301 0.94211 1.21348 0.94414 0.81905 1.00367 1.47470 1.54918 1.22692 1.05327 1.22151 0.79631 0.89538 0.83040 1.90720 1.56657 1.65386 1.34573 1.22762 0.99503 0.90792 0.88541 1.88146 1.37384 1.89070 1.14665 1.23231 0.95984 0.90007 0.91513 1.22172 0.97659 0.95253 0.83926 1.24199 0.98516 0.92677 0.96293 1.69036 1.08302 1.30972 1.10510 1.23286 1.05956 0.94160 0.89694 1.22901 0.94345 1.01532 1.02632 1.22967 0.94980 1.00177 1.01825 1.24197 0.94644 0.96400 0.97333 0.93109 0.95761 1.02844 0.94375 0.89179 0.84824 0.85944 0.83038 0.88569 0.85324 0.89867 0.85241 0.86171 0.92450 0.85977 0.91360 0.93813 0.86932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.39 13.29 21.45 0.28 -60.10 16 2 C 0.00 0.12 5.46 84.66 0.46 0.58 16 3 Si 0.96 47.30 29.54 68.60 2.03 49.32 16 4 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.28 -13.61 7.11 99.48 0.71 -12.91 16 6 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 7 C -0.53 -32.53 9.11 25.60 0.23 -32.29 16 8 H 0.05 3.20 7.74 -2.91 -0.02 3.18 16 9 C 0.04 2.24 5.02 29.85 0.15 2.39 16 10 C 0.14 6.60 4.49 86.38 0.39 6.98 16 11 N -0.57 -21.48 2.69 -779.85 -2.10 -23.57 16 12 C 0.47 17.75 7.64 87.60 0.67 18.42 16 13 O -0.59 -28.84 16.49 -3.03 -0.05 -28.89 16 14 C 0.06 1.57 6.93 71.10 0.49 2.06 16 15 O -0.37 -8.46 10.84 -148.98 -1.62 -10.08 16 16 C 0.07 1.14 6.14 71.87 0.44 1.59 16 17 C 0.10 2.53 1.67 3.81 0.01 2.54 16 18 C 0.01 0.26 6.31 83.69 0.53 0.79 16 19 N -0.47 -14.23 4.53 -902.13 -4.08 -18.31 16 20 C -0.02 -0.54 4.90 44.94 0.22 -0.32 16 21 C -0.18 -4.93 10.43 30.60 0.32 -4.61 16 22 C -0.16 -4.32 10.46 30.62 0.32 -4.00 16 23 C 0.00 0.11 6.25 83.69 0.52 0.63 16 24 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 25 H 0.02 1.45 5.34 -2.39 -0.01 1.43 16 26 H -0.05 -3.20 8.14 -2.39 -0.02 -3.22 16 27 H 0.04 1.94 7.36 -2.38 -0.02 1.92 16 28 H 0.09 3.91 5.57 -2.39 -0.01 3.89 16 29 H 0.13 3.15 8.14 -2.39 -0.02 3.13 16 30 H 0.12 2.13 8.14 -2.39 -0.02 2.12 16 31 H 0.15 1.38 7.84 -2.39 -0.02 1.36 16 32 H 0.10 1.09 8.13 -2.39 -0.02 1.07 16 33 H 0.13 1.54 7.60 -2.39 -0.02 1.52 16 34 H 0.08 2.03 7.04 -2.39 -0.02 2.01 16 35 H 0.13 2.08 7.73 -2.39 -0.02 2.06 16 36 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.04 1.79 6.82 -2.39 -0.02 1.78 16 41 H 0.11 2.35 7.66 -2.39 -0.02 2.33 16 Total: -1.00 -84.74 327.62 0.24 -84.50 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 1.02 Total: 12.37 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: 4.75 Total: -5.24 kcal Atomic # 7 Polarization: -96.09 SS G_CDS: -5.89 Total: -101.99 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -1.67 Total: -38.97 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.32 kcal Total: -84.74 0.24 -84.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274010109.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.295 kcal (2) G-P(sol) polarization free energy of solvation -84.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds