Wall clock time and date at job start Tue Mar 31 2020 02:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99652 * 2 1 4 4 H 1.48506 * 109.47247 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47376 * 299.99891 * 3 2 1 6 6 H 1.48499 * 109.47388 * 60.00015 * 3 2 1 7 7 C 1.37868 * 120.00293 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00663 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99923 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47674 * 179.97438 * 9 7 2 11 11 C 1.48725 * 110.99623 * 72.83321 * 10 9 7 12 12 C 1.55000 * 103.35565 * 158.79838 * 11 10 9 13 13 C 1.54798 * 102.93978 * 323.04219 * 12 11 10 14 14 C 1.47078 * 111.00398 * 189.99984 * 10 9 7 15 15 C 1.53868 * 110.68795 * 93.78972 * 14 10 9 16 16 C 1.54643 * 101.58525 * 263.78434 * 15 14 10 17 17 N 1.46852 * 105.57882 * 335.19929 * 16 15 14 18 18 C 1.46498 * 124.37117 * 196.91179 * 17 16 15 19 19 C 1.54035 * 113.81489 * 218.50746 * 18 17 16 20 20 O 1.44452 * 85.42413 * 223.23704 * 19 18 17 21 21 C 1.44174 * 93.38021 * 24.08929 * 20 19 18 22 22 C 1.34875 * 111.14398 * 16.91428 * 17 16 15 23 23 O 1.21282 * 125.04475 * 179.16957 * 22 17 16 24 24 H 0.97000 * 119.99935 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47099 * 59.99899 * 9 7 2 26 26 H 1.09002 * 109.47191 * 299.99983 * 9 7 2 27 27 H 1.09001 * 110.64660 * 277.26620 * 11 10 9 28 28 H 1.08997 * 110.64530 * 40.33157 * 11 10 9 29 29 H 1.09004 * 110.72198 * 81.40215 * 12 11 10 30 30 H 1.09005 * 110.72473 * 204.49842 * 12 11 10 31 31 H 1.09000 * 110.36394 * 263.09246 * 13 12 11 32 32 H 1.08996 * 110.37300 * 140.76063 * 13 12 11 33 33 H 1.09011 * 111.00156 * 145.70737 * 15 14 10 34 34 H 1.08999 * 111.00397 * 21.86280 * 15 14 10 35 35 H 1.09002 * 110.24003 * 94.25158 * 16 15 14 36 36 H 1.08998 * 110.24097 * 216.15233 * 16 15 14 37 37 H 1.08995 * 113.00066 * 350.33326 * 18 17 16 38 38 H 1.08993 * 113.86922 * 337.34305 * 19 18 17 39 39 H 1.09000 * 113.86354 * 109.05044 * 19 18 17 40 40 H 1.08992 * 113.86856 * 221.76876 * 21 20 19 41 41 H 1.09003 * 113.86177 * 90.05723 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 7 2.2057 -3.6157 0.0015 11 6 2.8645 -3.7538 1.3277 12 6 3.3666 -5.2202 1.3269 13 6 2.2363 -5.9734 0.5844 14 6 1.5202 -4.8951 -0.2359 15 6 1.5386 -5.2523 -1.7324 16 6 0.1581 -4.7297 -2.1934 17 7 -0.6857 -4.7313 -0.9914 18 6 -2.1486 -4.6553 -1.0078 19 6 -2.7390 -3.7880 0.1200 20 8 -3.7101 -4.8470 0.2686 21 6 -2.8409 -5.8412 -0.3098 22 6 0.0624 -4.8117 0.1280 23 8 -0.3752 -4.8171 1.2591 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5574 -0.8880 26 1 0.6248 -2.5562 0.8920 27 1 3.7015 -3.0611 1.4151 28 1 2.1464 -3.5940 2.1320 29 1 4.3080 -5.3053 0.7840 30 1 3.4760 -5.5910 2.3461 31 1 1.5487 -6.4256 1.2991 32 1 2.6559 -6.7344 -0.0734 33 1 1.6162 -6.3301 -1.8759 34 1 2.3455 -4.7319 -2.2483 35 1 0.2505 -3.7178 -2.5880 36 1 -0.2624 -5.3920 -2.9501 37 1 -2.5523 -4.4287 -1.9946 38 1 -2.0782 -3.6718 0.9790 39 1 -3.1626 -2.8447 -0.2249 40 1 -3.3449 -6.5229 -0.9948 41 1 -2.2112 -6.3534 0.4177 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274032349.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:40 Heat of formation + Delta-G solvation = -23.632981 kcal Electronic energy + Delta-G solvation = -23955.963536 eV Core-core repulsion = 20644.583002 eV Total energy + Delta-G solvation = -3311.380534 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.24330 -39.61430 -36.84698 -35.81815 -33.23874 -31.46668 -31.05934 -27.97876 -27.34469 -26.41172 -26.30298 -23.68205 -22.37539 -21.60646 -20.59193 -20.16762 -18.11972 -16.92516 -16.46375 -16.20850 -15.97713 -15.35913 -14.99731 -14.74870 -14.28422 -14.25870 -13.73488 -13.45015 -13.17342 -12.63776 -12.54291 -12.47935 -12.25270 -12.06931 -11.79083 -11.52968 -11.24235 -10.98035 -10.90313 -10.82948 -10.66817 -10.50333 -10.34559 -10.23630 -9.88604 -9.78970 -9.28778 -9.08745 -8.46468 -8.38954 -7.47846 -6.06426 -4.07985 2.92631 3.20348 3.28325 3.36046 3.40473 3.89109 4.38076 4.49547 4.57567 4.69864 4.89133 4.99914 5.16436 5.20882 5.25815 5.29452 5.43191 5.51009 5.58791 5.66563 5.71950 5.75352 5.97119 6.02965 6.11412 6.12976 6.17339 6.22533 6.31854 6.34246 6.40040 6.58970 6.65205 6.89681 7.05835 7.24759 7.39635 7.69612 7.87437 8.06679 8.41074 8.56195 8.99070 9.56063 11.04261 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.014773 B = 0.007732 C = 0.005879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.842886 B = 3620.661225 C = 4761.628900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.506 4.506 8 H 0.064 0.936 9 C 0.175 3.825 10 N -0.480 5.480 11 C 0.045 3.955 12 C -0.123 4.123 13 C -0.110 4.110 14 C 0.059 3.941 15 C -0.114 4.114 16 C 0.100 3.900 17 N -0.612 5.612 18 C 0.094 3.906 19 C 0.027 3.973 20 O -0.382 6.382 21 C 0.027 3.973 22 C 0.521 3.479 23 O -0.525 6.525 24 H 0.260 0.740 25 H 0.035 0.965 26 H 0.002 0.998 27 H 0.082 0.918 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.118 0.882 38 H 0.109 0.891 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.732 -12.687 -4.644 13.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.545 4.545 8 H 0.082 0.918 9 C 0.050 3.950 10 N -0.205 5.205 11 C -0.083 4.083 12 C -0.161 4.161 13 C -0.148 4.148 14 C -0.035 4.035 15 C -0.152 4.152 16 C -0.023 4.023 17 N -0.348 5.348 18 C -0.009 4.009 19 C -0.050 4.050 20 O -0.300 6.300 21 C -0.051 4.051 22 C 0.308 3.692 23 O -0.400 6.400 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.020 0.980 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.120 0.880 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.135 0.865 38 H 0.127 0.873 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.360 -12.437 -4.354 13.182 hybrid contribution -0.246 1.052 0.374 1.143 sum 0.115 -11.384 -3.980 12.061 Atomic orbital electron populations 1.69968 1.06007 1.26637 1.50808 1.24971 0.94874 0.99282 0.95384 0.86448 0.80092 0.83421 0.77503 1.19635 1.21050 1.21106 1.21096 0.93505 0.89642 1.50269 0.91804 1.20079 0.90384 0.87793 0.96784 1.65103 1.27284 1.00028 1.28112 1.23168 0.98904 0.95036 0.91178 1.22549 0.97950 0.95912 0.99652 1.22276 0.97573 0.96475 0.98493 1.22118 0.90091 0.94877 0.96375 1.22610 0.97058 1.00740 0.94821 1.22204 0.90647 1.02126 0.87278 1.48439 1.05121 1.73190 1.08018 1.24470 0.79247 0.96033 1.01197 1.24663 0.89450 0.92237 0.98636 1.89676 1.34347 1.20674 1.85339 1.24411 0.91450 0.93207 0.96024 1.21389 0.89751 0.73978 0.84117 1.90634 1.77872 1.49944 1.21579 0.93004 0.94726 0.98025 0.89969 0.93653 0.91098 0.91620 0.91188 0.90873 0.90488 0.88011 0.90372 0.91019 0.86460 0.87320 0.88704 0.89291 0.89907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.51 -14.04 8.92 -34.44 -0.31 -14.35 16 8 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 9 C 0.17 4.46 3.54 -4.98 -0.02 4.44 16 10 N -0.48 -10.04 4.86 -218.20 -1.06 -11.10 16 11 C 0.05 0.88 6.15 -1.76 -0.01 0.87 16 12 C -0.12 -1.83 7.07 -24.73 -0.17 -2.01 16 13 C -0.11 -1.64 6.18 -25.66 -0.16 -1.79 16 14 C 0.06 1.04 0.79 -132.18 -0.11 0.93 16 15 C -0.11 -1.57 6.33 -25.42 -0.16 -1.73 16 16 C 0.10 1.41 6.61 -2.99 -0.02 1.39 16 17 N -0.61 -10.27 2.86 -172.38 -0.49 -10.77 16 18 C 0.09 1.47 4.87 -66.85 -0.33 1.15 16 19 C 0.03 0.50 8.61 37.64 0.32 0.83 16 20 O -0.38 -6.80 12.46 -35.23 -0.44 -7.24 16 21 C 0.03 0.40 8.72 37.64 0.33 0.73 16 22 C 0.52 10.12 4.11 -11.05 -0.05 10.07 16 23 O -0.53 -11.81 13.84 5.56 0.08 -11.74 16 24 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 25 H 0.03 0.92 5.83 -51.93 -0.30 0.62 16 26 H 0.00 0.06 6.84 -51.93 -0.36 -0.30 16 27 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 28 H 0.05 0.99 7.79 -51.93 -0.40 0.58 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.10 7.44 -51.93 -0.39 0.71 16 32 H 0.07 0.88 7.40 -51.93 -0.38 0.50 16 33 H 0.08 0.84 7.57 -51.92 -0.39 0.44 16 34 H 0.10 1.42 8.07 -51.93 -0.42 1.00 16 35 H 0.08 1.24 7.37 -51.93 -0.38 0.85 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.12 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.11 2.40 5.75 -51.93 -0.30 2.10 16 39 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 40 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.08 1.33 7.30 -51.93 -0.38 0.95 16 LS Contribution 319.99 15.07 4.82 4.82 Total: -1.00 -32.24 319.99 -8.36 -40.60 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -6.21 Total: 2.41 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -0.77 Total: 2.02 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: -0.82 Total: -47.36 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.36 Total: -18.97 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.24 -8.36 -40.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032349.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.962 kcal (2) G-P(sol) polarization free energy of solvation -32.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds