Wall clock time and date at job start Tue Mar 31 2020 02:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99652 * 2 1 4 4 H 1.48506 * 109.47247 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47376 * 299.99891 * 3 2 1 6 6 H 1.48499 * 109.47388 * 60.00015 * 3 2 1 7 7 C 1.37868 * 120.00293 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00663 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99923 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47674 * 179.97438 * 9 7 2 11 11 C 1.48725 * 110.99623 * 72.83321 * 10 9 7 12 12 C 1.55000 * 103.35565 * 158.79838 * 11 10 9 13 13 C 1.54798 * 102.93978 * 323.04219 * 12 11 10 14 14 C 1.47078 * 111.00398 * 189.99984 * 10 9 7 15 15 C 1.53868 * 110.68795 * 93.78972 * 14 10 9 16 16 C 1.54643 * 101.58525 * 263.78434 * 15 14 10 17 17 N 1.46852 * 105.57882 * 335.19929 * 16 15 14 18 18 C 1.46498 * 124.37117 * 196.91179 * 17 16 15 19 19 C 1.54035 * 113.81489 * 218.50746 * 18 17 16 20 20 O 1.44452 * 85.42413 * 223.23704 * 19 18 17 21 21 C 1.44174 * 93.38021 * 24.08929 * 20 19 18 22 22 C 1.34875 * 111.14398 * 16.91428 * 17 16 15 23 23 O 1.21282 * 125.04475 * 179.16957 * 22 17 16 24 24 H 0.97000 * 119.99935 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47099 * 59.99899 * 9 7 2 26 26 H 1.09002 * 109.47191 * 299.99983 * 9 7 2 27 27 H 1.09001 * 110.64660 * 277.26620 * 11 10 9 28 28 H 1.08997 * 110.64530 * 40.33157 * 11 10 9 29 29 H 1.09004 * 110.72198 * 81.40215 * 12 11 10 30 30 H 1.09005 * 110.72473 * 204.49842 * 12 11 10 31 31 H 1.09000 * 110.36394 * 263.09246 * 13 12 11 32 32 H 1.08996 * 110.37300 * 140.76063 * 13 12 11 33 33 H 1.09011 * 111.00156 * 145.70737 * 15 14 10 34 34 H 1.08999 * 111.00397 * 21.86280 * 15 14 10 35 35 H 1.09002 * 110.24003 * 94.25158 * 16 15 14 36 36 H 1.08998 * 110.24097 * 216.15233 * 16 15 14 37 37 H 1.08995 * 113.00066 * 350.33326 * 18 17 16 38 38 H 1.08993 * 113.86922 * 337.34305 * 19 18 17 39 39 H 1.09000 * 113.86354 * 109.05044 * 19 18 17 40 40 H 1.08992 * 113.86856 * 221.76876 * 21 20 19 41 41 H 1.09003 * 113.86177 * 90.05723 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 7 2.2057 -3.6157 0.0015 11 6 2.8645 -3.7538 1.3277 12 6 3.3666 -5.2202 1.3269 13 6 2.2363 -5.9734 0.5844 14 6 1.5202 -4.8951 -0.2359 15 6 1.5386 -5.2523 -1.7324 16 6 0.1581 -4.7297 -2.1934 17 7 -0.6857 -4.7313 -0.9914 18 6 -2.1486 -4.6553 -1.0078 19 6 -2.7390 -3.7880 0.1200 20 8 -3.7101 -4.8470 0.2686 21 6 -2.8409 -5.8412 -0.3098 22 6 0.0624 -4.8117 0.1280 23 8 -0.3752 -4.8171 1.2591 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5574 -0.8880 26 1 0.6248 -2.5562 0.8920 27 1 3.7015 -3.0611 1.4151 28 1 2.1464 -3.5940 2.1320 29 1 4.3080 -5.3053 0.7840 30 1 3.4760 -5.5910 2.3461 31 1 1.5487 -6.4256 1.2991 32 1 2.6559 -6.7344 -0.0734 33 1 1.6162 -6.3301 -1.8759 34 1 2.3455 -4.7319 -2.2483 35 1 0.2505 -3.7178 -2.5880 36 1 -0.2624 -5.3920 -2.9501 37 1 -2.5523 -4.4287 -1.9946 38 1 -2.0782 -3.6718 0.9790 39 1 -3.1626 -2.8447 -0.2249 40 1 -3.3449 -6.5229 -0.9948 41 1 -2.2112 -6.3534 0.4177 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274032349.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:39 Heat of formation + Delta-G solvation = -48.416917 kcal Electronic energy + Delta-G solvation = -23957.038248 eV Core-core repulsion = 20644.583002 eV Total energy + Delta-G solvation = -3312.455246 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.63295 -40.99973 -38.37206 -37.21656 -35.25599 -32.93658 -32.65007 -29.32377 -28.64921 -28.36660 -27.65697 -25.19496 -24.13126 -22.86668 -22.09467 -21.52838 -19.56828 -18.63312 -18.16055 -17.60003 -17.37115 -16.99318 -16.47019 -16.21694 -15.99438 -15.67927 -15.24150 -14.88614 -14.52093 -14.23772 -14.21127 -13.87001 -13.80744 -13.41722 -13.36473 -13.11329 -12.80214 -12.54562 -12.51207 -12.24636 -12.08930 -11.98803 -11.86648 -11.78835 -11.55652 -11.28535 -11.12148 -10.66186 -10.57765 -9.73458 -9.21536 -8.23782 -6.34186 1.37246 1.38116 1.44674 1.51627 1.92426 2.36621 2.57929 3.08625 3.14566 3.18313 3.44286 3.59129 3.75165 3.89901 3.97724 4.02509 4.20313 4.29135 4.33832 4.37853 4.44496 4.61154 4.67529 4.71697 4.82629 4.85924 4.90775 4.94335 4.97627 5.05184 5.08174 5.13125 5.22420 5.28168 5.37807 5.58192 5.63121 5.96285 6.04464 6.10894 6.45165 6.80992 7.11567 7.35312 8.86969 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.014773 B = 0.007732 C = 0.005879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.842886 B = 3620.661225 C = 4761.628900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.968 3.032 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.284 1.284 7 C -0.525 4.525 8 H 0.063 0.937 9 C 0.203 3.797 10 N -0.480 5.480 11 C 0.037 3.963 12 C -0.108 4.108 13 C -0.105 4.105 14 C 0.045 3.955 15 C -0.103 4.103 16 C 0.095 3.905 17 N -0.612 5.612 18 C 0.099 3.901 19 C 0.016 3.984 20 O -0.396 6.396 21 C 0.036 3.964 22 C 0.506 3.494 23 O -0.570 6.570 24 H 0.262 0.738 25 H 0.021 0.979 26 H -0.052 1.052 27 H 0.076 0.924 28 H 0.005 0.995 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.103 0.897 35 H 0.054 0.946 36 H 0.122 0.878 37 H 0.154 0.846 38 H 0.063 0.937 39 H 0.094 0.906 40 H 0.136 0.864 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.183 -14.524 -7.105 16.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.793 3.207 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.210 1.210 7 C -0.563 4.563 8 H 0.082 0.918 9 C 0.077 3.923 10 N -0.205 5.205 11 C -0.091 4.091 12 C -0.146 4.146 13 C -0.143 4.143 14 C -0.049 4.049 15 C -0.141 4.141 16 C -0.026 4.026 17 N -0.345 5.345 18 C -0.005 4.005 19 C -0.062 4.062 20 O -0.314 6.314 21 C -0.041 4.041 22 C 0.294 3.706 23 O -0.449 6.449 24 H 0.071 0.929 25 H 0.039 0.961 26 H -0.035 1.035 27 H 0.094 0.906 28 H 0.024 0.976 29 H 0.116 0.884 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.135 0.865 33 H 0.139 0.861 34 H 0.122 0.878 35 H 0.073 0.927 36 H 0.140 0.860 37 H 0.172 0.828 38 H 0.082 0.918 39 H 0.112 0.888 40 H 0.154 0.846 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.827 -14.298 -6.853 15.960 hybrid contribution -0.748 1.618 1.187 2.141 sum 1.080 -12.679 -5.666 13.930 Atomic orbital electron populations 1.70109 1.07690 1.27634 1.51554 1.25900 0.95731 1.03155 0.94768 0.85350 0.79144 0.78603 0.77624 1.18452 1.20011 1.21042 1.21450 0.93650 0.90998 1.50221 0.91837 1.19545 0.90063 0.89264 0.93436 1.65055 1.26281 1.00612 1.28546 1.23212 0.97657 0.98738 0.89462 1.22527 0.98896 0.91896 1.01314 1.22339 0.96911 0.96407 0.98635 1.22460 0.88849 0.93790 0.99776 1.22701 0.96724 1.03439 0.91220 1.22452 0.91009 1.02150 0.87037 1.48599 1.05814 1.71790 1.08344 1.24609 0.78856 0.95293 1.01717 1.24443 0.89803 0.93217 0.98720 1.89651 1.34641 1.21227 1.85881 1.24527 0.90906 0.92883 0.95790 1.21857 0.91078 0.73615 0.84072 1.90604 1.78818 1.51907 1.23542 0.92884 0.96148 1.03455 0.90560 0.97630 0.88402 0.90019 0.92459 0.86459 0.86058 0.87831 0.92731 0.86022 0.82823 0.91845 0.88828 0.84590 0.91728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.68 13.29 21.44 0.28 -56.39 16 2 C 0.00 0.16 5.46 84.65 0.46 0.62 16 3 Si 0.97 44.80 29.54 68.60 2.03 46.82 16 4 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 7 C -0.52 -30.10 8.92 25.60 0.23 -29.87 16 8 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 9 C 0.20 10.93 3.54 85.56 0.30 11.23 16 10 N -0.48 -20.43 4.86 -844.26 -4.10 -24.54 16 11 C 0.04 1.50 6.15 86.63 0.53 2.04 16 12 C -0.11 -3.04 7.07 31.89 0.23 -2.81 16 13 C -0.10 -2.87 6.18 31.29 0.19 -2.68 16 14 C 0.04 1.53 0.79 3.05 0.00 1.53 16 15 C -0.10 -2.48 6.33 31.45 0.20 -2.28 16 16 C 0.10 2.43 6.61 86.87 0.57 3.00 16 17 N -0.61 -20.19 2.86 -828.67 -2.37 -22.56 16 18 C 0.10 3.00 4.87 45.69 0.22 3.23 16 19 C 0.02 0.62 8.61 72.30 0.62 1.24 16 20 O -0.40 -14.27 12.46 -148.98 -1.86 -16.12 16 21 C 0.04 1.02 8.72 72.30 0.63 1.65 16 22 C 0.51 20.18 4.11 87.57 0.36 20.54 16 23 O -0.57 -27.52 13.84 -3.04 -0.04 -27.57 16 24 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 25 H 0.02 1.14 5.83 -2.38 -0.01 1.13 16 26 H -0.05 -3.34 6.84 -2.39 -0.02 -3.35 16 27 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 28 H 0.01 0.25 7.79 -2.39 -0.02 0.23 16 29 H 0.10 2.26 8.14 -2.38 -0.02 2.25 16 30 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 31 H 0.06 1.73 7.44 -2.39 -0.02 1.71 16 32 H 0.12 2.20 7.40 -2.39 -0.02 2.18 16 33 H 0.12 1.90 7.57 -2.38 -0.02 1.88 16 34 H 0.10 2.52 8.07 -2.39 -0.02 2.51 16 35 H 0.05 1.67 7.37 -2.39 -0.02 1.65 16 36 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.15 3.54 8.14 -2.39 -0.02 3.52 16 38 H 0.06 3.10 5.75 -2.39 -0.01 3.09 16 39 H 0.09 3.58 8.14 -2.39 -0.02 3.56 16 40 H 0.14 2.57 8.14 -2.39 -0.02 2.55 16 41 H 0.06 2.07 7.30 -2.39 -0.02 2.05 16 Total: -1.00 -77.29 319.99 -0.48 -77.78 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 1.02 Total: 15.14 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 4.56 Total: 7.44 kcal Atomic # 7 Polarization: -97.30 SS G_CDS: -6.19 Total: -103.49 kcal Atomic # 8 Polarization: -41.79 SS G_CDS: -1.90 Total: -43.69 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -77.29 -0.48 -77.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032349.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.359 kcal (2) G-P(sol) polarization free energy of solvation -77.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds