Wall clock time and date at job start Tue Mar 31 2020 02:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99999 * 2 1 4 4 H 1.48505 * 109.46993 * 239.99308 * 3 2 1 5 5 H 1.48498 * 109.47558 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47167 * 119.99949 * 3 2 1 7 7 C 1.37874 * 119.99630 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99841 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00078 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47268 * 180.02562 * 9 7 2 11 11 C 1.48731 * 110.99466 * 290.12354 * 10 9 7 12 12 C 1.55001 * 103.35298 * 201.18390 * 11 10 9 13 13 C 1.54807 * 102.94188 * 36.95835 * 12 11 10 14 14 C 1.47076 * 111.00163 * 172.97271 * 10 9 7 15 15 C 1.53870 * 110.70360 * 266.26729 * 14 10 9 16 16 C 1.54645 * 101.58543 * 96.23040 * 15 14 10 17 17 N 1.46847 * 105.50578 * 24.74392 * 16 15 14 18 18 C 1.46500 * 124.36865 * 163.16314 * 17 16 15 19 19 C 1.54034 * 113.81915 * 216.17656 * 18 17 16 20 20 O 1.44172 * 85.52059 * 223.19464 * 19 18 17 21 21 C 1.44178 * 93.33848 * 24.19703 * 20 19 18 22 22 C 1.34671 * 111.26595 * 343.13767 * 17 16 15 23 23 O 1.21277 * 125.08192 * 180.85868 * 22 17 16 24 24 H 0.97003 * 119.99544 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47781 * 59.99842 * 9 7 2 26 26 H 1.08999 * 109.46986 * 299.99820 * 9 7 2 27 27 H 1.08998 * 110.64388 * 82.72548 * 11 10 9 28 28 H 1.09000 * 110.78893 * 319.71699 * 11 10 9 29 29 H 1.08999 * 110.72450 * 278.59311 * 12 11 10 30 30 H 1.08994 * 110.72228 * 155.31831 * 12 11 10 31 31 H 1.08993 * 110.36816 * 96.93787 * 13 12 11 32 32 H 1.09001 * 110.36659 * 219.27327 * 13 12 11 33 33 H 1.09000 * 111.00402 * 214.30561 * 15 14 10 34 34 H 1.09001 * 111.00041 * 338.15133 * 15 14 10 35 35 H 1.09009 * 110.23741 * 265.74042 * 16 15 14 36 36 H 1.08988 * 110.24414 * 143.75850 * 16 15 14 37 37 H 1.08998 * 113.00137 * 348.16472 * 18 17 16 38 38 H 1.09000 * 113.86475 * 337.34608 * 19 18 17 39 39 H 1.09008 * 113.86631 * 109.05131 * 19 18 17 40 40 H 1.09009 * 113.86503 * 221.66282 * 21 20 19 41 41 H 1.08997 * 113.99069 * 89.96712 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.2055 -3.6157 0.0018 11 6 2.9158 -3.7110 -1.3014 12 6 3.4189 -5.1768 -1.3286 13 6 2.2610 -5.9533 -0.6558 14 6 1.5120 -4.9018 0.1698 15 6 1.4701 -5.3075 1.6535 16 6 0.0715 -4.7997 2.0749 17 7 -0.7209 -4.7612 0.8393 18 6 -2.1833 -4.6836 0.7967 19 6 -2.8155 -5.4863 -0.3559 20 8 -3.6639 -4.3355 -0.5416 21 6 -2.7190 -3.4350 0.0710 22 6 0.0700 -4.8058 -0.2498 23 8 -0.3214 -4.7733 -1.3973 24 1 -0.4849 0.8401 -0.0004 25 1 0.6245 -2.5571 -0.8896 26 1 0.6240 -2.5566 0.8903 27 1 3.7550 -3.0161 -1.3333 28 1 2.2320 -3.5240 -2.1294 29 1 4.3384 -5.2798 -0.7524 30 1 3.5654 -5.5153 -2.3543 31 1 1.6026 -6.3823 -1.4111 32 1 2.6553 -6.7351 -0.0066 33 1 1.5429 -6.3894 1.7649 34 1 2.2550 -4.8045 2.2183 35 1 0.1470 -3.8013 2.5058 36 1 -0.3792 -5.4870 2.7908 37 1 -2.6477 -4.8622 1.7665 38 1 -2.1365 -5.6725 -1.1880 39 1 -3.3490 -6.3795 -0.0307 40 1 -3.1759 -2.7011 0.7350 41 1 -2.0097 -2.9934 -0.6290 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274032350.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:42 Heat of formation + Delta-G solvation = -23.150872 kcal Electronic energy + Delta-G solvation = -24012.679751 eV Core-core repulsion = 20701.320123 eV Total energy + Delta-G solvation = -3311.359628 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.25306 -39.59336 -36.84692 -35.82308 -33.23571 -31.45635 -31.05453 -27.95760 -27.34795 -26.39640 -26.24880 -23.67303 -22.39088 -21.60261 -20.57666 -20.12936 -18.12742 -16.94526 -16.41524 -16.20132 -15.79203 -15.48891 -15.02222 -14.74397 -14.27304 -14.21986 -13.67799 -13.41816 -13.21653 -12.70529 -12.52173 -12.38643 -12.17330 -12.08683 -11.77543 -11.57966 -11.15809 -10.94781 -10.88083 -10.84383 -10.70061 -10.50386 -10.34044 -10.23283 -9.87549 -9.76096 -9.25345 -9.07727 -8.45377 -8.39118 -7.46873 -6.05937 -4.07475 2.93470 3.21044 3.31348 3.35743 3.38145 3.94600 4.38258 4.49826 4.61737 4.69744 4.88109 4.99447 5.18574 5.21443 5.29672 5.31051 5.43083 5.51970 5.58492 5.72342 5.72965 5.87956 5.98927 6.03514 6.11653 6.13342 6.17661 6.28828 6.33431 6.34258 6.43280 6.59894 6.66823 6.90359 7.07013 7.25760 7.40465 7.68774 7.87561 8.07443 8.41504 8.56902 8.98631 9.56367 11.04789 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.014297 B = 0.008079 C = 0.005992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.923913 B = 3465.153042 C = 4671.689876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.509 4.509 8 H 0.062 0.938 9 C 0.176 3.824 10 N -0.480 5.480 11 C 0.046 3.954 12 C -0.123 4.123 13 C -0.110 4.110 14 C 0.059 3.941 15 C -0.114 4.114 16 C 0.101 3.899 17 N -0.612 5.612 18 C 0.091 3.909 19 C 0.021 3.979 20 O -0.382 6.382 21 C 0.033 3.967 22 C 0.521 3.479 23 O -0.525 6.525 24 H 0.262 0.738 25 H 0.003 0.997 26 H 0.034 0.966 27 H 0.082 0.918 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.116 0.884 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.529 -12.903 4.343 13.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.548 4.548 8 H 0.081 0.919 9 C 0.051 3.949 10 N -0.205 5.205 11 C -0.082 4.082 12 C -0.161 4.161 13 C -0.148 4.148 14 C -0.035 4.035 15 C -0.153 4.153 16 C -0.022 4.022 17 N -0.347 5.347 18 C -0.012 4.012 19 C -0.057 4.057 20 O -0.300 6.300 21 C -0.045 4.045 22 C 0.308 3.692 23 O -0.401 6.401 24 H 0.071 0.929 25 H 0.020 0.980 26 H 0.052 0.948 27 H 0.100 0.900 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.120 0.880 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.134 0.866 38 H 0.122 0.878 39 H 0.103 0.897 40 H 0.111 0.889 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.162 -12.600 4.052 13.237 hybrid contribution -0.209 1.042 -0.376 1.128 sum -0.048 -11.558 3.676 12.129 Atomic orbital electron populations 1.69942 1.05986 1.26876 1.50550 1.24960 0.94879 0.99234 0.95328 0.86560 0.79446 0.82761 0.78632 1.20286 1.21365 1.20182 1.21015 0.93406 0.89703 1.50652 0.91946 1.20064 0.90431 0.87719 0.96731 1.65110 1.25230 0.99839 1.30366 1.23146 0.98580 0.95064 0.91411 1.22555 0.97749 0.95877 0.99905 1.22281 0.97266 0.96624 0.98654 1.22124 0.90289 0.94925 0.96162 1.22613 0.96775 1.00599 0.95279 1.22209 0.91426 1.02060 0.86525 1.48386 1.05139 1.73227 1.07937 1.24526 0.79542 0.96724 1.00455 1.24573 0.92277 0.90807 0.97996 1.89633 1.36960 1.19483 1.83952 1.24503 0.90692 0.93557 0.95702 1.21321 0.89393 0.74045 0.84479 1.90627 1.79598 1.49965 1.19867 0.92874 0.97973 0.94780 0.90005 0.93627 0.91097 0.91631 0.91183 0.90894 0.90486 0.88032 0.90368 0.91024 0.86623 0.87769 0.89669 0.88883 0.88423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -14.11 8.82 -34.44 -0.30 -14.42 16 8 H 0.06 1.71 7.63 -52.49 -0.40 1.31 16 9 C 0.18 4.48 3.56 -4.98 -0.02 4.46 16 10 N -0.48 -10.04 4.88 -218.20 -1.07 -11.11 16 11 C 0.05 0.90 6.04 -1.75 -0.01 0.89 16 12 C -0.12 -1.84 7.08 -24.72 -0.17 -2.01 16 13 C -0.11 -1.64 6.18 -25.65 -0.16 -1.79 16 14 C 0.06 1.03 0.79 -132.18 -0.10 0.92 16 15 C -0.11 -1.57 6.33 -25.41 -0.16 -1.73 16 16 C 0.10 1.41 6.62 -2.99 -0.02 1.39 16 17 N -0.61 -10.25 2.90 -172.44 -0.50 -10.75 16 18 C 0.09 1.43 4.88 -66.85 -0.33 1.10 16 19 C 0.02 0.33 8.57 37.61 0.32 0.66 16 20 O -0.38 -7.05 12.45 -35.23 -0.44 -7.49 16 21 C 0.03 0.62 8.73 37.61 0.33 0.94 16 22 C 0.52 10.11 4.10 -11.14 -0.05 10.07 16 23 O -0.53 -11.81 13.77 5.56 0.08 -11.73 16 24 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 25 H 0.00 0.07 6.72 -51.93 -0.35 -0.28 16 26 H 0.03 0.91 6.01 -51.93 -0.31 0.59 16 27 H 0.08 1.60 7.98 -51.93 -0.41 1.19 16 28 H 0.05 1.00 7.85 -51.93 -0.41 0.60 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.09 7.44 -51.93 -0.39 0.71 16 32 H 0.07 0.88 7.40 -51.93 -0.38 0.49 16 33 H 0.08 0.84 7.57 -51.93 -0.39 0.44 16 34 H 0.10 1.41 8.07 -51.93 -0.42 0.99 16 35 H 0.08 1.23 7.35 -51.92 -0.38 0.85 16 36 H 0.07 0.75 8.14 -51.94 -0.42 0.33 16 37 H 0.12 1.43 8.14 -51.93 -0.42 1.00 16 38 H 0.10 1.89 5.62 -51.93 -0.29 1.60 16 39 H 0.09 1.06 8.14 -51.92 -0.42 0.64 16 40 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 41 H 0.10 2.24 7.42 -51.93 -0.39 1.86 16 LS Contribution 319.55 15.07 4.82 4.82 Total: -1.00 -32.10 319.55 -8.36 -40.46 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.20 Total: 2.69 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -0.77 Total: 1.99 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: -0.83 Total: -47.27 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.36 Total: -19.22 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.10 -8.36 -40.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032350.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.310 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds