Wall clock time and date at job start Tue Mar 31 2020 02:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99999 * 2 1 4 4 H 1.48505 * 109.46993 * 239.99308 * 3 2 1 5 5 H 1.48498 * 109.47558 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47167 * 119.99949 * 3 2 1 7 7 C 1.37874 * 119.99630 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99841 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00078 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47268 * 180.02562 * 9 7 2 11 11 C 1.48731 * 110.99466 * 290.12354 * 10 9 7 12 12 C 1.55001 * 103.35298 * 201.18390 * 11 10 9 13 13 C 1.54807 * 102.94188 * 36.95835 * 12 11 10 14 14 C 1.47076 * 111.00163 * 172.97271 * 10 9 7 15 15 C 1.53870 * 110.70360 * 266.26729 * 14 10 9 16 16 C 1.54645 * 101.58543 * 96.23040 * 15 14 10 17 17 N 1.46847 * 105.50578 * 24.74392 * 16 15 14 18 18 C 1.46500 * 124.36865 * 163.16314 * 17 16 15 19 19 C 1.54034 * 113.81915 * 216.17656 * 18 17 16 20 20 O 1.44172 * 85.52059 * 223.19464 * 19 18 17 21 21 C 1.44178 * 93.33848 * 24.19703 * 20 19 18 22 22 C 1.34671 * 111.26595 * 343.13767 * 17 16 15 23 23 O 1.21277 * 125.08192 * 180.85868 * 22 17 16 24 24 H 0.97003 * 119.99544 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47781 * 59.99842 * 9 7 2 26 26 H 1.08999 * 109.46986 * 299.99820 * 9 7 2 27 27 H 1.08998 * 110.64388 * 82.72548 * 11 10 9 28 28 H 1.09000 * 110.78893 * 319.71699 * 11 10 9 29 29 H 1.08999 * 110.72450 * 278.59311 * 12 11 10 30 30 H 1.08994 * 110.72228 * 155.31831 * 12 11 10 31 31 H 1.08993 * 110.36816 * 96.93787 * 13 12 11 32 32 H 1.09001 * 110.36659 * 219.27327 * 13 12 11 33 33 H 1.09000 * 111.00402 * 214.30561 * 15 14 10 34 34 H 1.09001 * 111.00041 * 338.15133 * 15 14 10 35 35 H 1.09009 * 110.23741 * 265.74042 * 16 15 14 36 36 H 1.08988 * 110.24414 * 143.75850 * 16 15 14 37 37 H 1.08998 * 113.00137 * 348.16472 * 18 17 16 38 38 H 1.09000 * 113.86475 * 337.34608 * 19 18 17 39 39 H 1.09008 * 113.86631 * 109.05131 * 19 18 17 40 40 H 1.09009 * 113.86503 * 221.66282 * 21 20 19 41 41 H 1.08997 * 113.99069 * 89.96712 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.2055 -3.6157 0.0018 11 6 2.9158 -3.7110 -1.3014 12 6 3.4189 -5.1768 -1.3286 13 6 2.2610 -5.9533 -0.6558 14 6 1.5120 -4.9018 0.1698 15 6 1.4701 -5.3075 1.6535 16 6 0.0715 -4.7997 2.0749 17 7 -0.7209 -4.7612 0.8393 18 6 -2.1833 -4.6836 0.7967 19 6 -2.8155 -5.4863 -0.3559 20 8 -3.6639 -4.3355 -0.5416 21 6 -2.7190 -3.4350 0.0710 22 6 0.0700 -4.8058 -0.2498 23 8 -0.3214 -4.7733 -1.3973 24 1 -0.4849 0.8401 -0.0004 25 1 0.6245 -2.5571 -0.8896 26 1 0.6240 -2.5566 0.8903 27 1 3.7550 -3.0161 -1.3333 28 1 2.2320 -3.5240 -2.1294 29 1 4.3384 -5.2798 -0.7524 30 1 3.5654 -5.5153 -2.3543 31 1 1.6026 -6.3823 -1.4111 32 1 2.6553 -6.7351 -0.0066 33 1 1.5429 -6.3894 1.7649 34 1 2.2550 -4.8045 2.2183 35 1 0.1470 -3.8013 2.5058 36 1 -0.3792 -5.4870 2.7908 37 1 -2.6477 -4.8622 1.7665 38 1 -2.1365 -5.6725 -1.1880 39 1 -3.3490 -6.3795 -0.0307 40 1 -3.1759 -2.7011 0.7350 41 1 -2.0097 -2.9934 -0.6290 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274032350.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:41 Heat of formation + Delta-G solvation = -48.052525 kcal Electronic energy + Delta-G solvation = -24013.759568 eV Core-core repulsion = 20701.320123 eV Total energy + Delta-G solvation = -3312.439445 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.65305 -41.01186 -38.37988 -37.22562 -35.25459 -32.93614 -32.65185 -29.32298 -28.66060 -28.35042 -27.65726 -25.19293 -24.14990 -22.86771 -22.08967 -21.50704 -19.58274 -18.63961 -18.15753 -17.61538 -17.20691 -17.07460 -16.59852 -16.22621 -15.99322 -15.63891 -15.20602 -14.84379 -14.54549 -14.26701 -14.20306 -13.94555 -13.71184 -13.42226 -13.32831 -13.15163 -12.78797 -12.56695 -12.51188 -12.24600 -12.09125 -11.97344 -11.86642 -11.79426 -11.55002 -11.30467 -11.11451 -10.65063 -10.55050 -9.74969 -9.20906 -8.23591 -6.34101 1.37055 1.40164 1.44852 1.48016 1.92990 2.36387 2.60025 3.08332 3.11426 3.24235 3.44184 3.56672 3.75870 3.90613 3.97845 4.02238 4.20602 4.29405 4.37143 4.38771 4.43807 4.62374 4.68010 4.72432 4.82858 4.86395 4.90781 4.95536 4.98310 5.06219 5.08425 5.13426 5.23095 5.28191 5.38467 5.57666 5.63283 5.95371 6.04960 6.10947 6.45527 6.80365 7.12172 7.35145 8.86687 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.014297 B = 0.008079 C = 0.005992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.923913 B = 3465.153042 C = 4671.689876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.004 3.996 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.529 4.529 8 H 0.063 0.937 9 C 0.205 3.795 10 N -0.481 5.481 11 C 0.038 3.962 12 C -0.109 4.109 13 C -0.105 4.105 14 C 0.044 3.956 15 C -0.103 4.103 16 C 0.095 3.905 17 N -0.611 5.611 18 C 0.102 3.898 19 C 0.023 3.977 20 O -0.397 6.397 21 C 0.024 3.976 22 C 0.506 3.494 23 O -0.570 6.570 24 H 0.262 0.738 25 H -0.051 1.051 26 H 0.019 0.981 27 H 0.075 0.925 28 H 0.004 0.996 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.103 0.897 35 H 0.054 0.946 36 H 0.123 0.877 37 H 0.164 0.836 38 H 0.075 0.925 39 H 0.131 0.869 40 H 0.104 0.896 41 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.827 -15.001 6.787 16.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.567 4.567 8 H 0.081 0.919 9 C 0.079 3.921 10 N -0.205 5.205 11 C -0.090 4.090 12 C -0.146 4.146 13 C -0.143 4.143 14 C -0.049 4.049 15 C -0.141 4.141 16 C -0.026 4.026 17 N -0.345 5.345 18 C -0.001 4.001 19 C -0.054 4.054 20 O -0.315 6.315 21 C -0.054 4.054 22 C 0.294 3.706 23 O -0.449 6.449 24 H 0.071 0.929 25 H -0.034 1.034 26 H 0.037 0.963 27 H 0.094 0.906 28 H 0.023 0.977 29 H 0.116 0.884 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.121 0.879 35 H 0.073 0.927 36 H 0.141 0.859 37 H 0.182 0.818 38 H 0.093 0.907 39 H 0.149 0.851 40 H 0.122 0.878 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.479 -14.722 6.533 16.174 hybrid contribution -0.661 1.699 -1.196 2.181 sum 0.817 -13.023 5.336 14.098 Atomic orbital electron populations 1.70097 1.07654 1.27735 1.51293 1.25892 0.95732 1.03106 0.94719 0.85469 0.78194 0.77985 0.79176 1.19777 1.21011 1.18604 1.21393 0.93621 0.91076 1.50603 0.91875 1.19518 0.90087 0.89180 0.93364 1.65062 1.24298 1.00411 1.30728 1.23187 0.97385 0.98802 0.89604 1.22532 0.98686 0.91802 1.01630 1.22345 0.96503 0.96690 0.98753 1.22471 0.89095 0.93772 0.99605 1.22704 0.96426 1.03280 0.91701 1.22466 0.91955 1.02223 0.85998 1.48544 1.05754 1.71791 1.08362 1.24642 0.79244 0.93968 1.02276 1.24639 0.92022 0.91561 0.97177 1.89607 1.37179 1.20440 1.84252 1.24302 0.90512 0.95311 0.95271 1.21792 0.90781 0.73632 0.84402 1.90596 1.80531 1.51885 1.21899 0.92895 1.03383 0.96276 0.90630 0.97728 0.88378 0.90051 0.92397 0.86439 0.86006 0.87863 0.92745 0.85887 0.81831 0.90730 0.85106 0.87754 0.94259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.78 13.29 21.45 0.28 -56.49 16 2 C 0.00 0.24 5.46 84.65 0.46 0.70 16 3 Si 0.97 44.99 29.54 68.60 2.03 47.02 16 4 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 7 C -0.53 -30.45 8.82 25.60 0.23 -30.22 16 8 H 0.06 3.54 7.63 -2.91 -0.02 3.52 16 9 C 0.20 11.05 3.56 85.56 0.30 11.36 16 10 N -0.48 -20.49 4.88 -844.24 -4.12 -24.62 16 11 C 0.04 1.55 6.04 86.63 0.52 2.07 16 12 C -0.11 -3.05 7.08 31.90 0.23 -2.83 16 13 C -0.10 -2.86 6.18 31.29 0.19 -2.67 16 14 C 0.04 1.50 0.79 3.06 0.00 1.50 16 15 C -0.10 -2.48 6.33 31.45 0.20 -2.28 16 16 C 0.10 2.41 6.62 86.87 0.58 2.99 16 17 N -0.61 -20.11 2.90 -828.97 -2.41 -22.51 16 18 C 0.10 3.09 4.88 45.69 0.22 3.31 16 19 C 0.02 0.71 8.57 72.27 0.62 1.33 16 20 O -0.40 -14.96 12.45 -148.98 -1.86 -16.81 16 21 C 0.02 0.95 8.73 72.27 0.63 1.58 16 22 C 0.51 20.19 4.10 87.61 0.36 20.55 16 23 O -0.57 -27.56 13.77 -3.02 -0.04 -27.60 16 24 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 25 H -0.05 -3.30 6.72 -2.39 -0.02 -3.32 16 26 H 0.02 1.08 6.01 -2.39 -0.01 1.06 16 27 H 0.08 3.06 7.98 -2.39 -0.02 3.04 16 28 H 0.00 0.21 7.85 -2.39 -0.02 0.19 16 29 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.08 2.04 8.14 -2.39 -0.02 2.03 16 31 H 0.06 1.74 7.44 -2.39 -0.02 1.72 16 32 H 0.12 2.19 7.40 -2.39 -0.02 2.17 16 33 H 0.12 1.89 7.57 -2.39 -0.02 1.87 16 34 H 0.10 2.51 8.07 -2.39 -0.02 2.49 16 35 H 0.05 1.66 7.35 -2.38 -0.02 1.64 16 36 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.16 3.40 8.14 -2.39 -0.02 3.38 16 38 H 0.07 2.81 5.62 -2.39 -0.01 2.80 16 39 H 0.13 2.86 8.14 -2.38 -0.02 2.84 16 40 H 0.10 3.75 8.14 -2.38 -0.02 3.73 16 41 H 0.04 2.01 7.42 -2.39 -0.02 1.99 16 Total: -1.00 -78.07 319.55 -0.55 -78.62 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 1.02 Total: 15.00 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 4.54 Total: 7.40 kcal Atomic # 7 Polarization: -97.38 SS G_CDS: -6.25 Total: -103.62 kcal Atomic # 8 Polarization: -42.51 SS G_CDS: -1.90 Total: -44.41 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -78.07 -0.55 -78.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032350.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.563 kcal (2) G-P(sol) polarization free energy of solvation -78.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds